TCONS_00052538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052538
Unique NameTCONS_00052538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052538 ID=TCONS_00052538|Name=TCONS_00052538|organism=Clytia hemisphaerica|type=transcript|length=432bp
GTGGTGGTTTATGAAGCTAGAACAGTACCTAGTGTAACTTAATTTTGTCT
GTCAGCCACAAAAAATGCTCATCTAATCATGAAAAGACTACTATTGAtgg
tttcctttcaaatttgatataaaataCAAACCCTGCTTTCTTAATGGATC
AATTATCTGTATTGTCATGTTAACGGTATTATCTTGCATTTACCTCCAAG
TAAGCCACATTTTGTGCTCAAATTACGACTTCACAACATTTTGAAAGTAT
TCTGGTGATTCTAAATTGGATTTTAGATCATTTTGAGTAGCTACAAATGT
TTTAGAAGCGTATGGAGCAGGTTAAACGCttaatttctgacaaaaatatt
CCTTTAATGTAAGCCACAAAATAGAACGTTTAACAGTGGAATATCATGTA
CATTTAATGCTTTTCGtaaaattcaatctttc
Run BLAST on NCBI

transcript from alignment at scaffold_217:2674..3105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052538 ID=TCONS_00052538|Name=TCONS_00052538|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at scaffold_217:2674..3105 (Clytia hemisphaerica)
gaaagattgaattttaCGAAAAGCATTAAATGTACATGATATTCCACTGT
TAAACGTTCTATTTTGTGGCTTACATTAAAGGaatatttttgtcagaaat
taaGCGTTTAACCTGCTCCATACGCTTCTAAAACATTTGTAGCTACTCAA
AATGATCTAAAATCCAATTTAGAATCACCAGAATACTTTCAAAATGTTGT
GAAGTCGTAATTTGAGCACAAAATGTGGCTTACTTGGAGGTAAATGCAAG
ATAATACCGTTAACATGACAATACAGATAATTGATCCATTAAGAAAGCAG
GGTTTGtattttatatcaaatttgaaaggaaaccaTCAATAGTAGTCTTT
TCATGATTAGATGAGCATTTTTTGTGGCTGACAGACAAAATTAAGTTACA
CTAGGTACTGTTCTAGCTTCATAAACCACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033222XLOC_033222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052538-exon-scaffold_217-1491911889:2674..3105TCONS_00052538-exon-scaffold_217-1491911889:2674..3105Clytia hemisphaericaexon
TCONS_00052538-exon-scaffold_217-1510915933:2674..3105TCONS_00052538-exon-scaffold_217-1510915933:2674..3105Clytia hemisphaericaexon
TCONS_00052538-exon-scaffold_217-1575043694:2674..3105TCONS_00052538-exon-scaffold_217-1575043694:2674..3105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:2674..3105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22253	1.49551	1.75197	2.61671	2.64677	1.90922	1.95736	2.10179	0.697446	0.754717	0.804706	0.920316	0.524144	0.934805	1.09534	1.08271	0.605148	0.979484	1.00327	0.176971	3.05975	1.6993	0.0366352	1.06305	0.341622	1.09511	2.77907	1.27471	0	1.22097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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