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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052535 ID=TCONS_00052535|Name=TCONS_00052535|organism=Clytia hemisphaerica|type=transcript|length=591bp
TAGACACATCTTGAAGCTGATATAAAAAAATCCTTCTTTGAAGATCATTA
CAAACAACTCGAAAAAATGATTCAAATAGCAGCTCAAAATctCAAGAAAC
TTTTCTTGGCTTCTATCATCTTACAAGGCGTTCTGTCAACACATATCGAT
ACAGACGATTCAGTTGAAATCAAAATCTCTAAACACCAAAACATCAAGCC
ATTCAAGAACCATCTGATGTCGATCCTCAACCGAAGTAAAAGATCACAGC
AACCTACACCACGTCCGTGCTCACCTGAACTCTTACCATCTTTTCCAATC
ACTGCTGGTAACTGTACCAAAATGGTAACCCTGAATGGCTGCAAAGGTGC
ATGCAATCCAGACTCAAATGGCCATTGCACCAAGTGCGTCATGAAAACTT
CAGTTGACGTCAAAGTCGAATTTAAATGTGGTGGAAAAACCGTCAATTAC
CCATTAAGTTTCAAGTCAGCTAAAACATGTGTTTGCAAAGGACCTTGTGG
TCTTTAGACACTATTATTTTTAGTCTAATAAAACGAAATTCCCTTTGGAA
AAGAAATTGCACAACAAACCTTGATATAGAAAAGGGCCGTT Run BLAST on NCBI protein sequence of TCONS_00052535-protein >TCONS_00052535-protein ID=TCONS_00052535-protein|Name=TCONS_00052535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MIQIAAQNLKKLFLASIILQGVLSTHIDTDDSVEIKISKHQNIKPFKNHL
MSILNRSKRSQQPTPRPCSPELLPSFPITAGNCTKMVTLNGCKGACNPDS
NGHCTKCVMKTSVDVKVEFKCGGKTVNYPLSFKSAKTCVCKGPCGL Run BLAST on NCBI transcript from alignment at scaffold_217:179896..181108- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052535 ID=TCONS_00052535|Name=TCONS_00052535|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at scaffold_217:179896..181108- (Clytia hemisphaerica)
TAGACACATCTTGAAGCTGATATAAAAAAATCCTTCTTTGAAGATCATTA
CAAACAACTCGAAAAAATGATTCAAATAGCAGCTCAAAATGTAAGTTTCC
GGTGGTATTTCTCGGGGGGGGGGAGGTACTTGGGCAACAAGGGGTACGGG
GATGTGCCGAAATTAGGTTTTTGAAAACTGATCCTTTCTTATACAGTGCA
GAGAACATTTCATTAAATTTGAGTGAAAAATCGGCCCTCATGTTGCCAAA
AAACTTCGTTTCGCTCATTTTTTACACCTTTAGAGTGCACTTTCAGTCAT
CTATGTTCATTTCGACCCTTACTATGTATTTTTTATCTTGAAAAACATAC
CATCTACCATGGGTGGCCCCGTCCGTCTACCATCGTTGAAAGAAAAGTTG
TTGAATTTTTCATTTATTAATATACGTTTTCAAACAAGAAGAAATTGAAG
ACGGGTAAAAATAGGTTTTCTTTGCATGATTACTTCACGAACACCACTTG
CCTCGTTTTAAAATTATTGCCATGGTGATTAACTCCCAGCGGATTTTATC
AAAACTACTTTCTATTTGTAAAAAAATCATTTAATCTCTCAAGGGACATA
ATCACCATGGTAATTGTTTGAATACGAGGCAAGTGATGTGCATGACGTAA
TTTATGAAAAGGTCTATTTCTGGCTCTTTTTCATAATCGAATCTATTTTT
TCTTTGTTTTAGCTCAAGAAACTTTTCTTGGCTTCTATCATCTTACAAGG
CGTTCTGTCAACACATATCGATACAGACGATTCAGTTGAAATCAAAATCT
CTAAACACCAAAACATCAAGCCATTCAAGAACCATCTGATGTCGATCCTC
AACCGAAGTAAAAGATCACAGCAACCTACACCACGTCCGTGCTCACCTGA
ACTCTTACCATCTTTTCCAATCACTGCTGGTAACTGTACCAAAATGGTAA
CCCTGAATGGCTGCAAAGGTGCATGCAATCCAGACTCAAATGGCCATTGC
ACCAAGTGCGTCATGAAAACTTCAGTTGACGTCAAAGTCGAATTTAAATG
TGGTGGAAAAACCGTCAATTACCCATTAAGTTTCAAGTCAGCTAAAACAT
GTGTTTGCAAAGGACCTTGTGGTCTTTAGACACTATTATTTTTAGTCTAA
TAAAACGAAATTCCCTTTGGAAAAGAAATTGCACAACAAACCTTGATATA
GAAAAGGGCCGTT Coding sequence (CDS) from alignment at scaffold_217:179896..181108- >TCONS_00052535 ID=TCONS_00052535|Name=TCONS_00052535|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_217:179896..181108- (Clytia hemisphaerica)
CTCAAGAAACTTTTCTTGGCTTCTATCATCTTACAAGGCGTTCTGTCAAC
ACATATCGATACAGACGATTCAGTTGAAATCAAAATCTCTAAACACCAAA
ACATCAAGCCATTCAAGAACCATCTGATGTCGATCCTCAACCGAAGTAAA
AGATCACAGCAACCTACACCACGTCCGTGCTCACCTGAACTCTTACCATC
TTTTCCAATCACTGCTGGTAACTGTACCAAAATGGTAACCCTGAATGGCT
GCAAAGGTGCATGCAATCCAGACTCAAATGGCCATTGCACCAAGTGCGTC
ATGAAAACTTCAGTTGACGTCAAAGTCGAATTTAAATGTGGTGGAAAAAC
CGTCAATTACCCATTAAGTTTCAAGTCAGCTAAAACATGTGTTTGCAAAG
GACCTTGTGGTCTTTAGATGATTCAAATAGCAGCTCAAAATCTCAAGAAA
CTTTTCTTGGCTTCTATCATCTTACAAGGCGTTCTGTCAACACATATCGA
TACAGACGATTCAGTTGAAATCAAAATCTCTAAACACCAAAACATCAAGC
CATTCAAGAACCATCTGATGTCGATCCTCAACCGAAGTAAAAGATCACAG
CAACCTACACCACGTCCGTGCTCACCTGAACTCTTACCATCTTTTCCAAT
CACTGCTGGTAACTGTACCAAAATGGTAACCCTGAATGGCTGCAAAGGTG
CATGCAATCCAGACTCAAATGGCCATTGCACCAAGTGCGTCATGAAAACT
TCAGTTGACGTCAAAGTCGAATTTAAATGTGGTGGAAAAACCGTCAATTA
CCCATTAAGTTTCAAGTCAGCTAAAACATGTGTTTGCAAAGGACCTTGTG
GTCTTTAGATGATTCAAATAGCAGCTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052535-exon-scaffold_217-1575043694:181019..181108 | TCONS_00052535-exon-scaffold_217-1575043694:181019..181108 | Clytia hemisphaerica | exon |
| TCONS_00052535-exon-scaffold_217-1575043694:179896..180396 | TCONS_00052535-exon-scaffold_217-1575043694:179896..180396 | Clytia hemisphaerica | exon |
| TCONS_00052535-exon-scaffold_217-1510915933:181019..181108 | TCONS_00052535-exon-scaffold_217-1510915933:181019..181108 | Clytia hemisphaerica | exon |
| TCONS_00052535-exon-scaffold_217-1510915933:179896..180396 | TCONS_00052535-exon-scaffold_217-1510915933:179896..180396 | Clytia hemisphaerica | exon |
| TCONS_00052535-exon-scaffold_217-1491911889:181019..181108 | TCONS_00052535-exon-scaffold_217-1491911889:181019..181108 | Clytia hemisphaerica | exon |
| TCONS_00052535-exon-scaffold_217-1491911889:179896..180396 | TCONS_00052535-exon-scaffold_217-1491911889:179896..180396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:179896..181108 - |
Blast
The following BLAST results are available for this feature:
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