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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052520 ID=TCONS_00052520|Name=TCONS_00052520|organism=Clytia hemisphaerica|type=transcript|length=1075bp
GACAAATCAACTACAACTCAAGCAAATCATTTAAACAAGACCACTGCCAT
AAATTTGCAGTAAAAGATCTTCCTGATAAAGTTTCAACAAATTGAACATC
ATAGACAAACAACAAAAATGATTCAAATAGCTGCTCAATATATCCAAAAA
CTTCTATTGGCTTCTATCATCTTGCAAGGAGTTTTCTCAACACATATCGA
TACAGACGATTCAGTTGAAATCAAAATCTCCAAACANTCTATTGGCTTCT
ATCATCTTGCAAGGAGTTTTCTCAACACATATCGATACAGACGATTCAGT
TGAAATCAAAATCTCTAAACACCAAAACATCGAACCATTCAAGAACAATT
TGATGTCGATCCTCAACCGAAGTAAAAGATCACAGCAACCTACGCCACGT
CCGTGCTCACCTGAACTCTTACCATCTTTTCTAATCACTGCTGGTAACTG
TACCAAAATGGTAACCCTGAATGGCTGCAAAGGTGCATGCAATCCAGACT
CAAATAGCCATTGCACCAAGTGCATCATGAAAACTTCAGTTGACGTCAAA
GTCGAATTTAAATGTGACGGAAAAACTGTCAATTATCCATTAAGTTTCAA
GTCAGCTAAAACATGTGTTTGCAAAGGACCTTGTGGTCTTTAGACACTAT
TATTTTTAGTCTAATAAAACGAAATTCCCTTTGGAAAAGAAATTGCACAA
CAAACCTTGATATAGAAAAGGGCCGTTACGCCGTAAGGCCTAACCACTCT
AAAAGTAGGCCGAAAGCAGTCTCCGGTGAAGAAGAATTCAGATTGAACAT
TGTCTCCACAATCTAGACCAGCTTTGTTGACGGGAGAACACTGTAATTGT
TTATAAATCATTGAAATATTCAGAGCAGAGTAAAAGGTGATTttcctttt
gtcttttttatcaTTAATTACACTGACAGAGTAAATTGACAAGACCTTTT
GGAACTAAATGCTgcagaaaatatttgttttttagttaaaatatatttaa
agaattatttctgtcaaaatttatcaaataaggagatttgggtggcaggg
CACCATTTGCATTTCGTCTTTTTTG Run BLAST on NCBI transcript from alignment at scaffold_217:173556..175401+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052520 ID=TCONS_00052520|Name=TCONS_00052520|organism=Clytia hemisphaerica|type=transcript|length=1846bp|location=Sequence derived from alignment at scaffold_217:173556..175401+ (Clytia hemisphaerica)
GACAAATCAACTACAACTCAAGCAAATCATTTAAACAAGACCACTGCCAT
AAATTTGCAGTAAAAGATCTTCCTGATAAAGTTTCAACAAATTGAACATC
ATAGACAAACAACAAAAATGATTCAAATAGCTGCTCAATATGTAAGTATT
GTCCGTTCATAGTCAGTTACATCCCTGTAtcactagactggagtcgttta
taatgcgtgtaatacagtagtataggcgatatatgataatacgataattg
ttacgggataatattagtttgtataaactaaaatttgttccctccattac
tttttgttttatttctactatatctgaattagtcgtctagcttgctagac
tactgTATCACAAATCCGCTGGAACCCGAGCTCAATTGGAAAATTaggtc
aaaattttgtccccggttgGAAAATACCTGACAATTTCATCCTCATTGGC
AAATTCACTTTAATTTCGAAATCCGATGGAgtaaattgcactccaaaacc
atttcCACTGGATCTTTTGAGCTTGGNTCGATGGAGTAAATTGCGCTCCA
AAACCATTTCCACTGGATCTTTTGAGCTTGGAAAAATAGATcatctatcc
ccattgggatttcgataaaaACTTTTACCCCTACTGTGGGAAAAattttt
caccggggctgtgagacaggggtaatCAGATGGTCGTTGAAAAAGGTTTC
TATCCCGTTTCTACTACCGAGGCTTCTATCTATatattcaaagaatttta
attCCTAGAAAGGTTTTgagtgtttcaaaaaaaaacaataccgGTTCTGA
AAATAACACCGACGACTGAACACTTTTTGGATCTCAGTTGTAAAATCCAT
TACTATGAATTCTGAGATTTTATATCATTAATAAACCAATTCTTTTCACC
AAATTACTTTAGATCCAAAAACTTCTATTGGCTTCTATCATCTTGCAAGG
AGTTTTCTCAACACATATCGATACAGACGATTCAGTTGAAATCAAAATCT
CCAAACANTCTATTGGCTTCTATCATCTTGCAAGGAGTTTTCTCAACACA
TATCGATACAGACGATTCAGTTGAAATCAAAATCTCTAAACACCAAAACA
TCGAACCATTCAAGAACAATTTGATGTCGATCCTCAACCGAAGTAAAAGA
TCACAGCAACCTACGCCACGTCCGTGCTCACCTGAACTCTTACCATCTTT
TCTAATCACTGCTGGTAACTGTACCAAAATGGTAACCCTGAATGGCTGCA
AAGGTGCATGCAATCCAGACTCAAATAGCCATTGCACCAAGTGCATCATG
AAAACTTCAGTTGACGTCAAAGTCGAATTTAAATGTGACGGAAAAACTGT
CAATTATCCATTAAGTTTCAAGTCAGCTAAAACATGTGTTTGCAAAGGAC
CTTGTGGTCTTTAGACACTATTATTTTTAGTCTAATAAAACGAAATTCCC
TTTGGAAAAGAAATTGCACAACAAACCTTGATATAGAAAAGGGCCGTTAC
GCCGTAAGGCCTAACCACTCTAAAAGTAGGCCGAAAGCAGTCTCCGGTGA
AGAAGAATTCAGATTGAACATTGTCTCCACAATCTAGACCAGCTTTGTTG
ACGGGAGAACACTGTAATTGTTTATAAATCATTGAAATATTCAGAGCAGA
GTAAAAGGTGATTttccttttgtcttttttatcaTTAATTACACTGACAG
AGTAAATTGACAAGACCTTTTGGAACTAAATGCTgcagaaaatatttgtt
ttttagttaaaatatatttaaagaattatttctgtcaaaatttatcaaat
aaggagatttgggtggcagggCACCATTTGCATTTCGTCTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052520-exon-scaffold_217-1491911889:173556..173696 | TCONS_00052520-exon-scaffold_217-1491911889:173556..173696 | Clytia hemisphaerica | exon |
| TCONS_00052520-exon-scaffold_217-1510915933:173556..173696 | TCONS_00052520-exon-scaffold_217-1510915933:173556..173696 | Clytia hemisphaerica | exon |
| TCONS_00052520-exon-scaffold_217-1575043694:173556..173696 | TCONS_00052520-exon-scaffold_217-1575043694:173556..173696 | Clytia hemisphaerica | exon |
| TCONS_00052520-exon-scaffold_217-1491911889:174468..175401 | TCONS_00052520-exon-scaffold_217-1491911889:174468..175401 | Clytia hemisphaerica | exon |
| TCONS_00052520-exon-scaffold_217-1510915933:174468..175401 | TCONS_00052520-exon-scaffold_217-1510915933:174468..175401 | Clytia hemisphaerica | exon |
| TCONS_00052520-exon-scaffold_217-1575043694:174468..175401 | TCONS_00052520-exon-scaffold_217-1575043694:174468..175401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:173556..175401 + |
Blast
The following BLAST results are available for this feature:
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