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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052519 ID=TCONS_00052519|Name=TCONS_00052519|organism=Clytia hemisphaerica|type=transcript|length=2956bp
AATTATATTAATTCTATTGTGCTTTTTTCTAAATTGCTTGTATAACAAAT
GATATATTTCAAATAATAAATTGTTATTTTGAATAGCTAACCTCTCAGAT
GGGTGCGTCACCCTCTTATATGTTCAAAATATTATAAAGCCCAACATACC
AAACAATATCATGTAGTGTTCGACAGTtctcacacccctgtctcacagcc
ccggtggaactctTCTCCTCAGCGGGAATAAAAAATCATATTGAAATCCa
aatgggaatagaaattttatcgtggggatgattttggagtgcaattttta
aacatttaatttcgatTGGATTGGATATGAAATCTAAgacaatttcccag
tggggctgaaattccagggtattttcttaccagggacgaaatttttgcca
gattttccagtggggctgggcttCCAGCGGGTCTGTACACAAGGGTGTGT
TCTCAGTTCGAAAAGAGAAAGTAATACTCATATCAATTATAATCTTAACA
ACTGTAATAAAACGTAAGGCCACACAAATATGCTAGTTCTTCATTGGTTA
GtatctttaaaaagttttgtttcagTACAAACTCCGAacagaaaaaaatc
gtcaatATTATCAATATCTGACTTAAATATCTCAATAACCAAACCACGAA
AGACTTCGTATACATGTTATTATTAGTTATTATCAAAATATAAGGGCCTT
TTATGGTTGTAAGCCCTTTGAGTCATCGAGTATTATAGATCTTATATAGC
ACACATTTCATTGGTCAATAAGGATGATTCAGGGTTAGAAAATCATCTAC
CATTTACTTCCTTCCAGATACTGCTGAAAAGAGGATTGAACTCTAATTAA
CCAGTATCAAACTACAGCAAAATTGATATCAATTCGTTGTATTAATTAAT
TTAGTTTGTCAATGTGTTGAGTATTACTATTATATTACTGAGTATTACTG
TCAAGTTTGATAGCTGACGTATTGGCGGATTCATAGGGTGGTGGTGGTGG
GAGGCTGGCGGATGTTTTGCGAATGGTTGATTTGGTGATTTTTGAAAGAC
TTGTATCTCTCTCTGAATGGTTAAATGAACCTTTATGCTTATTCTTAACA
TGGACTGCTGATCTCTTTTGACATGTAACTCttaagaaaatatatttcaG
ATTTCCACGGAATTTCTTATCGACTAGACTGTAAATTATGGGGTTGATAC
AGGCGTGAATGGTGTACGGAACAAGGGCTGCCATACGGATATAGGCTAGT
GTATCGGCAGATacacttttaaaaatatcatgATCGTAAAGTACCCATAC
AATACGATTCGGTGATACGAGGACTGCAAAGCTGATCAAAAGATACGATA
TGATCATTGTGATTTTACCATCTTCTTTACGACGTCGGGATTGCTCTTTA
AGACTGAACGTTTTACGCgtgtgattttgtgattttcgaAGACTCTTTAC
GATCCCCATGTATAAGAATGTGATAGCAACGATCGGGATGATGAAAGTTA
CGATCATTAAGAACCAGGAATAATATAAGGATTACCTCTTGTCGGGCCAT
TGTTCTTTGCAAAGTGCTGCATTATCAATATGTTCGACTTTCGATACAAT
GATAGTTGGTACGACGAATAAGAGCGCAAGGGAAACATTGACGACCGACA
TAATAGTGATTTTAGCGTTGGAACTTTgattcatgaaaggttttaCGATC
CCATTAAAACGTTCCATTGATATGATCAAGATGAAGCCTAAAGCCATGAT
TGCTGTTGAGTTAATGATCGAATATAAAAACTTGCAGACATGGTCGTTAT
ATTCTCACTGGCATGACCAGATGCCTGGAACAACAACTGTAAGCTGCAAG
CAAGAGAAAACCAAATCAGCAAATGCCAACATGCCTATAACCTTACGANG
GCAAGACCAGATGCCTGGAACAACAACTGTAAGCTGCAAGCAAGAGAAAA
CCAAATCAGCAAATGCCAACATGCCTATAACCTTACGACAGATTGTATTT
TTCTCATTAACCATTGTCACGAATAGGCATAATAgatttccaatgatacc
aattGAACATATGACGATAATGCTGTAGGTTTTAACTTTATGTGCTTTTG
AACAGACTAGGATTTTCTCTACGCGTTTGTCGTCTTTGAAAAAGAGACAG
AGCTGTCCCAAATCAGGACATTTGCAGCGTTCTTTTGGAATATTTAGTTG
CAAGCAAACATCTGATAAGGAGGATTGACCTAGTTTGATAACGATCCTTG
GAGGCTTTGCAATGATTGATTTTAGACGTTGTGACGTATTTGCGGGCGTA
TTTGACCTGGTAGTGTTTCGATTGTAAAGTGTTGGTCCAGGTTGAAAGGT
TTTAGTGGTCACTGTGGATGTTGAATTGGTGTCATTCCTCAGGGGAGAGT
TGATGGATATGCTTTCATTGGTAAGCACGGATAAGTTGCCAGAGATGATG
ATTGGTAAGGTAATATTCAGCACAACTGGGAATgtcgtgatatttttttt
gattacGATGGTAGATTCTCTCTGGGTTGTGTCTGGATCAGTTATGTTCA
ATTCTGTGGAGTTTTGGAGAATTAGAATGATGTAGGTTGAATTGCTGTCG
ATTACAGatgttgaattttgatttgagGAAAATGAGACGTTGCCAACTAA
AGATGAACTAGCAGAGAGATTGCTTCTATTAGTTGTGTTCTTAAAGGTGG
TTGTATGATTCAGATTATGGTTGTCAGTGCCATTTGGATAACTTGCTGAT
TGTGTGTTGATTTCTTGATTTGTTggtattcttgaaatttggaaagAATC
AAAACCCTCTGCAAAGCTTGCTATTCCACCAAACAAAATGATNTTGGAAA
GAATCAAAAACCTCTGCAAAGCTTGCTATTCCACCaaacaaaatgatcaa
aacatATAAATAaggttttgaaatttccatatcAAAAGTCATCCGAATTT
TAGCTT Run BLAST on NCBI transcript from alignment at scaffold_217:168128..171472+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052519 ID=TCONS_00052519|Name=TCONS_00052519|organism=Clytia hemisphaerica|type=transcript|length=3345bp|location=Sequence derived from alignment at scaffold_217:168128..171472+ (Clytia hemisphaerica)
AATTATATTAATTCTATTGTGCTTTTTTCTAAATTGCTTGTATAACAAAT
GATATATTTCAAATAATAAATTGTTATTTTGAATAGCTAACCTCTCAGAT
GGGTGCGTCACCCTCTTATATGTTCAAAATATTATAAAGCCCAACATACC
AAACAATATCATGTAGTGTTCGACAGTtctcacacccctgtctcacagcc
ccggtggaactctTCTCCTCAGCGGGAATAAAAAATCATATTGAAATCCa
aatgggaatagaaattttatcgtggggatgattttggagtgcaattttta
aacatttaatttcgatTGGATTGGATATGAAATCTAAgacaatttcccag
tggggctgaaattccagggtattttcttaccagggacgaaatttttgcca
gattttccagtggggctgggcttCCAGCGGGTCTGTACACAAGGGTGTGT
TCTCAGTTCGAAAAGAGAAAGTAATACTCATATCAATTATAATCTTAACA
ACTGTAATAAAACGTAAGGCCACACAAATATGCTAGTTCTTCATTGGTTA
GtatctttaaaaagttttgtttcagTACAAACTCCGAacagaaaaaaatc
gtcaatATTATCAATATCTGACTTAAATATCTCAATAACCAAACCACGAA
AGACTTCGTATACATGTTATTATTAGTTATTATCAAAATATAAGGGCCTT
TTATGGTTGTAAGCCCTTTGAGTCATCGAGTATTATAGATCTTATATAGC
ACACATTTCATTGGTCAATAAGGATGATTCAGGGTTAGAAAATCATCTAC
CATTTACTTCCTTCCAGATACTGCTGAAAAGAGGATTGAACTCTAATTAA
CCAGTATCAAACTACAGCAAAATTGATATCAATTCGTTGTATTAATTAAT
TTAGTTTGTCAATGTGTTGAGTATTACTATTATATTACTGAGTATTACTG
TCAAGTTTGATAGCTGACGTATTGGCGGATTCATAGGGTGGTGGTGGTGG
GAGGCTGGCGGATGTTTTGCGAATGGTTGATTTGGTGATTTTTGAAAGAC
TTGTATCTCTCTCTGAATGGTTAAATGAACCTTTATGCTTATTCTTAACA
TGGACTGCTGATCTCTTTTGACATGTAACTCttaagaaaatatatttcaG
ATTTCCACGGAATTTCTTATCGACTAGACTGTAAATTATGGGGTTGATAC
AGGCGTGAATGGTGTACGGAACAAGGGCTGCCATACGGATATAGGCTAGT
GTATCGGCAGATacacttttaaaaatatcatgATCGTAAAGTACCCATAC
AATACGATTCGGTGATACGAGGACTGCAAAGCTGATCAAAAGATACGATA
TGATCATTGTGATTTTACCATCTTCTTTACGACGTCGGGATTGCTCTTTA
AGACTGAACGTTTTACGCgtgtgattttgtgattttcgaAGACTCTTTAC
GATCCCCATGTATAAGAATGTGATAGCAACGATCGGGATGATGAAAGTTA
CGATCATTAAGAACCAGGAATAATATAAGGAATACCTAAAAGAAATAGAA
TGAATAAAGAGTTTATGGTTAAGAATGACTCTTTTTAAGTAAGTCTGTAA
CGACAGGTGGAAACGACCAGAAGGCTccctttcgatagctatctgcttaa
agggcgccactctttcttcCAGAATTGCTCCACCTACCCTTGATTCTTCT
CTCAATTGCTGAGCATTAAACAGAAAAATATCAATCACCTTTTTTGTGCT
CCGTACAAAGTCTTTGCTTCGGTCTGGCCGGGGGTTGAACCCGCGAGAAC
CCTCTGAGAACGAGATTGCTGCATAGCATAGCATACACCAAAGTCTTATC
TGAAATACAATCTAGCCTTGTCTTTAGCATAGACTTTTCTAAAGCACAGT
CTTGACCAAAGTAAGATCACTTACCTCTTGTCGGGCCATTGTTCTTTGCA
AAGTGCTGCATTATCAATATGTTCGACTTTCGATACAATGATAGTTGGTA
CGACGAATAAGAGCGCAAGGGAAACATTGACGACCGACATAATAGTGATT
TTAGCGTTGGAACTTTgattcatgaaaggttttaCGATCCCATTAAAACG
TTCCATTGATATGATCAAGATGAAGCCTAAAGCCATGATTGCTGTTGAGT
TAATGATCGAATATAAAAACTTGCAGACATGGTCGTTATATTCTCACTGG
CATGACCAGATGCCTGGAACAACAACTGTAAGCTGCAAGCAAGAGAAAAC
CAAATCAGCAAATGCCAACATGCCTATAACCTTACGANGGCAAGACCAGA
TGCCTGGAACAACAACTGTAAGCTGCAAGCAAGAGAAAACCAAATCAGCA
AATGCCAACATGCCTATAACCTTACGACAGATTGTATTTTTCTCATTAAC
CATTGTCACGAATAGGCATAATAgatttccaatgataccaattGAACATA
TGACGATAATGCTGTAGGTTTTAACTTTATGTGCTTTTGAACAGACTAGG
ATTTTCTCTACGCGTTTGTCGTCTTTGAAAAAGAGACAGAGCTGTCCCAA
ATCAGGACATTTGCAGCGTTCTTTTGGAATATTTAGTTGCAAGCAAACAT
CTGATAAGGAGGATTGACCTAGTTTGATAACGATCCTTGGAGGCTTTGCA
ATGATTGATTTTAGACGTTGTGACGTATTTGCGGGCGTATTTGACCTGGT
AGTGTTTCGATTGTAAAGTGTTGGTCCAGGTTGAAAGGTTTTAGTGGTCA
CTGTGGATGTTGAATTGGTGTCATTCCTCAGGGGAGAGTTGATGGATATG
CTTTCATTGGTAAGCACGGATAAGTTGCCAGAGATGATGATTGGTAAGGT
AATATTCAGCACAACTGGGAATgtcgtgatattttttttgattacGATGG
TAGATTCTCTCTGGGTTGTGTCTGGATCAGTTATGTTCAATTCTGTGGAG
TTTTGGAGAATTAGAATGATGTAGGTTGAATTGCTGTCGATTACAGatgt
tgaattttgatttgagGAAAATGAGACGTTGCCAACTAAAGATGAACTAG
CAGAGAGATTGCTTCTATTAGTTGTGTTCTTAAAGGTGGTTGTATGATTC
AGATTATGGTTGTCAGTGCCATTTGGATAACTTGCTGATTGTGTGTTGAT
TTCTTGATTTGTTggtattcttgaaatttggaaagAATCAAAACCCTCTG
CAAAGCTTGCTATTCCACCAAACAAAATGATNTTGGAAAGAATCAAAAAC
CTCTGCAAAGCTTGCTATTCCACCaaacaaaatgatcaaaacatATAAAT
AaggttttgaaatttccatatcAAAAGTCATCCGAATTTTAGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052519-exon-scaffold_217-1491911889:168128..169658 | TCONS_00052519-exon-scaffold_217-1491911889:168128..169658 | Clytia hemisphaerica | exon |
| TCONS_00052519-exon-scaffold_217-1510915933:168128..169658 | TCONS_00052519-exon-scaffold_217-1510915933:168128..169658 | Clytia hemisphaerica | exon |
| TCONS_00052519-exon-scaffold_217-1575043694:168128..169658 | TCONS_00052519-exon-scaffold_217-1575043694:168128..169658 | Clytia hemisphaerica | exon |
| TCONS_00052519-exon-scaffold_217-1491911889:170048..171472 | TCONS_00052519-exon-scaffold_217-1491911889:170048..171472 | Clytia hemisphaerica | exon |
| TCONS_00052519-exon-scaffold_217-1510915933:170048..171472 | TCONS_00052519-exon-scaffold_217-1510915933:170048..171472 | Clytia hemisphaerica | exon |
| TCONS_00052519-exon-scaffold_217-1575043694:170048..171472 | TCONS_00052519-exon-scaffold_217-1575043694:170048..171472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:168128..171472 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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