TCONS_00052517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052517
Unique NameTCONS_00052517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=transcript|length=1918bp
NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA
CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA
ACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTGATGGGT
ATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCGAAGTAA
CACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAGTCGATG
ATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTAGAACAC
TCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACCGACGAG
AGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACTCGCTGA
TCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACACAGGGTT
ACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGATGATACA
AGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTCCAAC
CTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCGAATA
TCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCTATACAA
CCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGAAAGGGT
TAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACGACGTCG
CGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGTGAAGCC
ACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGATATCTAT
GCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTAACAATT
ATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCATGTAGA
CTCGCCTCCGAAATCTAAAAGAAACTAACATTACTTCACTTCACCAAAAT
CGTATGCTTCAGGATTCtttagttttaccagaaaaccttAACCAATCAAC
GGTTTACAGAATCCATTTATCAAAGCTATTTGAGGAGGCTTTTATGGAAT
CAGTGATTGGATTTCGATGTAGAAAGAAAAAGTACACTACAATAACAAAT
GAAGAGTTTCCTGAAAAGAACAGCTAAATGTGAGAGTGATTCGGAATAAA
CACATTTTGGAATGTGGTTAACGATAAAAAGGGCTGCAGAATTATTATTG
ATCACGTGTTATGTTATGTTTACATGATGATGCGAGGAAGTTTTTTCAAT
CCTTGCAACACTTTGAAGGTCTATAGACATTGTGTGATGTcgtttcaatt
ttgtttttattaagaATTGACTTTGTGACATTTCAATATCTAGAGGATCT
TTTAATTAGAATTATAGAAATTGTTAGtacaaaacaaaattataaataca
attttagtaaaaataaaatcgaTAGAATAATTCTTCtatttacaaataaa
ttataaaagTGTGATGGtttattgttttgatgaatGATGCCATTCGAGTT
GTAACTTATCTGCAATCCTATTGATCATGATAACTCGTAATCATTCCATA
AGCTACAGGGAAAAGGAAGATAGTAAATGCTTCACAGAGGGCTTAAACTC
ACTACGTACACTGCATAACTATTTTTTTACTGCTAAACTACTTCAATAGC
GCTTCGTCGGGCAAACGTCatgattattacttctctcatttgaccgaaat
tcaatcccacaatccttttcgtcttaattcaaaagtcgtgaaagttatta
ctttttctttgtaattgagtgtaatttgcgtgcaatcgtaataaacgcaa
agggtgatgggattgaatttcagtcaaacataaaaatcaatgtctatttt
tagattcgcgacGGTATG
Run BLAST on NCBI

protein sequence of TCONS_00052517-protein

>TCONS_00052517-protein ID=TCONS_00052517-protein|Name=TCONS_00052517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
XSKSGFTSQSHQLQNNDSVFNGSGNTTLFNIENNRHALELCQQMSNTLMG
IRHKICKAIDKEKNRSNTWLGYFREIFMMNEVDDFSCKRDENRLIDYLEH
SCKAFANFFKLPELPTRGESESLSDQVENINSLIPTPRLYDDESVPEHRV
TENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRI
STHLNNKHGERLHELYNRPDIIGRSLRKISQKGLKQEHYAESAIKMPTTS
RSQTTTAAADVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLFDCNWLTI
ILLTLLVLMVSVLYHVDSPPKSKRN
Run BLAST on NCBI

transcript from alignment at scaffold_217:127564..140004+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=transcript|length=12441bp|location=Sequence derived from alignment at scaffold_217:127564..140004+ (Clytia hemisphaerica)
NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA
CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA
ACCGACACGTAGGTTTTTCTATTAATTACgtaacaaaaagtttgattatA
TGAATTATATAGCTGCCGTAGCGTGAAGGTTGAAGATATGACCATGGTGC
ACAATGTTGTGGGTTCGAACCCTAGTCGGGTCAAACCAAAGATTCTAAAG
TTATAATTGATTTCTCTCTACTTGATGCTCAGTAACTTAAGAGAATTTTC
AAGGACTATTatagaaatccagggaaaggagtggcgacCTCACATatggt
cgcaaacttacttacttatataGAGGAGTCAGACCGGTTGTTGGTTATTG
GTTTGTACGGATTTTTATAGGTCATTGGGCCAAACTTGTTCCTTGAACAG
GCTATGCAAATGAATTAGCCCGAGAAAAAAACAGGAAACTAAACAAGAGC
ACATGAAAATGATTATATTTTCTACCCTAGGCTTTGGAGCTCTGTCAGCA
GATGTCAAACACTTTGATGGGTATACGACACAAGATTTGTAAAGCTATCG
ATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATATTTCCGTGAAATT
TTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAGAGACGAGAACCG
ATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCGcaaattttttca
aggtttgTAAATGAAGCTTTTTTTCCCAGATGATATCTTTTTGACCCATA
CATGTTATTTTAAGCGtacaaaaaatcgaaaacaggctcagaaaTGCTTA
GGAAGGCCCGACAAGGCTGGAAAATGCTTGTAAGGATGCTTTTATCCCAA
GCAAAGATTTAGGGTAATTTTAAAAAATCCGTAAAATACCAACCAAGATC
AGGAGAATACATTTTTCGTTAATGCTTAgtatatgcttaaatttttgcca
tatctgagcctagttATACTCGTGAACACTCGACTTTGTAAAATTAGATT
GTTCACAACTCCGACGGGGAGGATTTTTTCCCATTTGACCTTCTGGATCT
GTAATACGGGAAGTATGTTTTAAAGTTGAACATAAGCTTTGTTTGCATAG
AGAAATGTTTTTTGGTGAAAGTCATACAAAATTCAACCAATAAACATCAT
TCGGAAATGAGATTTTTATCGGTTTTTTCACACACGTCTGCTTTTAGTGT
ATCAATAGTTATGTACTTATCGTTTTTGTCAAGGCAAGAAAAAAAGGGCA
AATCTCAACATTAGTATCTTaggaaaatgagaatttttctaTAACATAAA
CTTTTGACAATNGTTTTTTACACACGTCTGCTTTTAGGGTATCAATAGTT
ATGTATTTATCGTTTTTGTCaatgcaagaaaaaaaaaatggcaaatCTCA
AAATAGTATCTTaggaaaatgagaatttttctaTAACATAAACTTTGGAC
AATGAgtgaaatcaagtgcgtattacttataGGAAtaaacggatcctgca
ctaatgtacttcccagttttctcaaaggtaacgaagcgagtgggaattga
acccacgacctctcgcttgccgggcgattgctctcccaactgCGCTATCG
GTTCGTTGCTATTACACTAGTTCGTAGTAGACGAGGGGAGCGACGTGCTC
AATGTTCACCATCCGGTACCTGAATTCTACGAATCAATGGAATTGCCACG
GACTGAGACACAGCTAGTGTCCAATCTCCAACCAACCCGCTAACTTTGAG
AGAACTGTTAGGCTATGTACATTGGGGAGAGGCATTAGCCCAACGGACAA
TGAGATTCGGCTTTTGGTCATGTGGATGAATTTCTTTCATTGTCAAAGGT
TCATCTTATAGAAAGATTCTCAATATGCTAGAGACTCATTTTGAGATTGC
TCCTTCTGCTTTGACAACGATGTTATATATCTTTTCTTTGCTTACTGTAG
CTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGT
GGAGAACATCAACTCGCTGATCCCAACACCACGTCTCTATGACGACGAGA
GTGTTCCGGAACACAGGGTTACCGAGAACGGCATCGAATTAACGGACAGG
GGAAGATACCAGGTATATTATtcttttttaccctttttcggGGTTGGCAC
TCACTTTTTACCGAAATTCGTTCATATTCCTAGGGttgtttttgaggatt
tttagtAAAGATTGCATTTCGttgaactaattttcgcggtagaaACCTAA
AAACGCTGTGGAAAATAGTGAGAGGTCTAGGGATAGAGAAACGACGCGTG
CGCAATCACGTgacttatacacgttttttagaTTGCGTTCTGTACATAGT
TTTTATATTCATTCTAACATATATTCAGTAGCGGAAAGACGTATAAAGTT
ATATCTAAAATCTTCAATGTTTCTACGTTTTTACTGATACTCATGATCCA
GAACTATTAAGAGTTAAGAAGATTTTACATGGCGCCCGATGAGGGACAGC
AGAGAAGTCAGCATTCGAATCGTTGAACTGTACAAAATGAAGTAAGAGCA
GCACGgtatatacaaatttacgtaTCATCTAACATTTGTGACGAATTTAC
AAatctatttgatttttttcacaccgatatctttcttctttgctatcttt
cctttattttctttttacggatagttttggatgtttttggcggatttttt
ctggattttttcgATACGGTTTAGCAATGTAAGAAAATTGGCAAGAGAGA
GGGTCTGAGGTTAGTTTTGACTACAACGGTAAAGTCAGCACAAGATTATC
TAACAGGAGAAGACATTCAACGGTCAAGGCTAGTTGGTTTCAAGAGAACA
GTTCAAGAAGTTGTAAAACAACTCGAATCAGCAAACGAGGATGTCATCAA
AGGTTTAGAAGCAGATAAGATTGGCGAGGACATAGTTGAGTCTTTCACTT
ATGTTCAGTCAGCCAATGACTTAGAGGCAAGTATTGACATTAAGATGCAA
GAGTTAGTTTTAAAAGACAGCCCTGTTTCAAGCTCAGTCTCATCCATAGC
TTCATCCAGCAACAGACAGACATGCAGGTTGCCAAAGATGGAGCTTCCCA
GTTTCAAGGGAGACCCTCTTCTTTGGCAAGGATTTTGGGACCAGTACAAT
GTTGCAattcatgaaaatgaaagtttaaCAGATATTGACAGGTTCAATTA
CTTGAAGAGATTTTTGAGTGGCGAGGCTTTAAGATCAGTCTCAGGCTTAA
CTTTGAATAGTGAGAATTATCAAGAAGCTATCCAGATATTGAAAGACAGG
TATGGAAACGAACAGATTCTAATTTCGGCACATATGGAAGCGTTGTTAAA
GATGAACAAGGTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTT
GGTTATGGTTTGTCGATGTTGTTGCAAGTGTGGGTAAAGTAACGGTGGAG
AGGTTTGTTTTGGTTCCAGCAGATTTGATTAGAGGATGTGAGTTACATGG
GTTTTGTGATAGTTCGTCGGAAGTTTATTGCGCAGTTGTGTATTTGAGAG
TGCTGATGGGGACTGATGTGAAGACGTCTTTATTNNNNNNNNNNNNNNNN
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NNCGATGACATAATGAAAGAGAGTATCGACTTAACGGAAACTGACAATAA
CGTGACAACGACTTTGACAATGACGAAAATACCTGCTACCAACTTACACG
CCATCATTGAGTACGAACGTTTCGGCTCACTCGAGAAGCTTATAAGTATA
CTAAGCTACGTCAGACGATTTATTGAGAATttgaggaagaagaagaaagg
aaAACCATTATCATTGGACACTCTTTCAACTGAAGAACGAAAAGACACCA
TGGAACTGATTATTGCAAACGAACAACATCAACTGAAGGGACAAGAGGAC
taccaaaaattgaaatcatcGTTAAACTTGTTTGAAGATCAGAAAGGACT
TTTACGGCTACGCGGACGATTCGGAAATTCAACATTACAATACCAAGAAA
AGCATCCACTCATACTCAGAACAGACAGTGTATTTACGGAACAACTTATA
AAGGAGACACACGAGAAAGTATTCCATCACGGCGTGGAATCAACACTGGC
CCATTTACGAACTAATTATTGGATTGTCAGAGGAAGGAAGACAGTCAAAA
ATTTACTATATAAGTGTACCTTATGCAAACGTTATCAAGGAAAGACAATA
TCACCACCAGCTAGTCCTGACTTGCCAGATTTTCGTTTAAGTTTTAATGC
TTTCAATGCCACAGGATTGGACTACGCTGGACCCTTGTATGTATAAAGTG
AAGATAAGAAAGAGACTCAGAAGGTCTACATTCTACTCCTAACATGTGCC
GGAACTCGTGCTATCCATCTAGAGGTCTGTCCAGACATGAAAAATTCTGC
TTTCATTCGtgcttttaaaagattttcgtcACGCCGAGGTGTACCTTGTG
TGGTTATTCACGacaatttcaaaactttcaaatcgaaagaagttaaactt
tttttcagcCAACAGGACATTGAACAACAATTTATTTTACCTTCTTCCCC
CTGGTGGGGTGGAATGTACGAGCGTCTTGTGCGCAGCgtgaaaatatctt
taaagaaaacattaggTAAATCCCTAGTAACACTAGAAGAATTGCAGACG
ATCTTATGTCAGATTGAGGCGTTTATTAACAGCAGACCACTATGTTACGT
AAACGAAGATGACATCGACGAGACTATCACACCAAACCATTTAATTTTTG
GGAAGAATATCTTTCACAAGCAACACGGTAATGCtgaagttttgttttta
gacAATAATGACGACTGTACAAAGAGAATGAGACACATAAAAATCATTCT
GTCACATTTCCAAAAtagatttgaaaaagtttaccTTCAAGAATTGAGGC
AAAATAACATTTATAGAAAGAATACGGATAATGATGTAAAGTTGCGCGTT
GGAGAGGTTATTTTAATTAAAGGAGAAAAGATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGAAAGAC
GTATAAAGTTATATCTAAAATCTTCAATGTTTCTACGTTTTTACTGATAC
TCATGATCCAGAACTATTAAGAGTTAAGAAGATTTTACAAACGCGAagta
gttcccgcgaaaattagtttcgtTAAAAGTATTATCTGTGAAAggtaaaa
acttaaaaaacccTAAATTGGGTCAACTTAAAGCTTCCAAAttttatact
ttaatgggatgaactttcgcggggattaaaatccgcgaaattaagtccca
atggaaatttggaagggtcTCATCCTCGAAAaaagtaaaagtcacaaaat
tgtgaaaatattgccacccaatagtgcctaacgcgaaattaagtccccgc
gaattttcgaatttcgcggataggctcaaccgcgaaatttaatccccgcg
aaagtttatcccattaaagtactcaattatttcttattttgtATAGATGA
TACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTC
CAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCG
AATATCCACTCACCTCAATAATAAGGTGATcaattacttttatttttatt
ttcaccaagGTTGCAACTTTTCTGTAGACAGAAATCTGTCCATAAAACTT
CTCATTAGAACTTCCTTTCCGATAACAAGCTTTGAATGTGGAACTTATGT
AAAactgaaatataattttttgcgTATCGTCCATATTCATCAAGGATGTT
TTACTTTCCTTCCTGATACGGTGAGAAAATATCCTCCTTTTTAGCCAACC
TTTCGCCACACTTCTAGAAGTGTGCAACAATTAGTTTTGAATCTCGAGAT
TACAAGTAATTTTAACAACTCTATTCCCAATTATCACCTCAAAAGCTCCC
TATTCATgaatgatatgcaccattgcaatgtcttccacggacccaacagc
tgattggttgtatgtgacatattgactgattttacgtcacttacaaccaa
tcagctgctgggtccgtgatgtaatatcagaagacattgcaatggtgtat
atcatgaattcagCAACTAAAGGCCGGCtcaaatgaatccaacattcaAT
TGGCCTATACTAGACGCCACGGCTTTTTTCTACGCTGTAACGTCTATTCC
aatttgcgactttttcgaatgttttgagcccaggttttcgggctctaaac
attcgattttttgacgtcattttaaacgtttgaagctcctgcagtatcAA
AAAAaccgaatttgcgtcaaaacacttgaaaggcttctatttttcgaaaa
tcgtcaaagtggaactcacagccaattcgattgacttccaaatttgccat
actcaccaactttgccaaatctacaattttaatgtcaaaagatcacagtt
tcatggcaaatttgtacatcgctacgccgccattatgatttccgttttgt
gatgcttagtcagcagttttctgtcggcgtttttaaccaatcaaattacc
gatcggcattgttttgctttagcattggaaggtcttctatttttcaaaat
ctttggcaaaagtggcaaaattggagtgaaaagaacacaggtctcgTGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
tgctttagcattggaaggtcttctatttttcaaaatctttggcaaaagtg
gcaaaattggagcgaaaagaacacaggtctcgtgggaacagtgttttgta
cGGAGACATAcggaggtaagttccaaaaatgccaagaatgccacattcac
cacatcttttttatttggcatttatggcactcaaattttgccacatttgc
caaatttttgtcaatcgaatgcaaaataattggcaatcagggcaaaaaag
gcatattttgaagtcaatcgaattggctgtaagaaacgggatgaaaaatc
ccggtttttggtgaggtactcGCTAACATTCAATCCAACATTTCAAATTT
ATTGTTGGACGAAATGTTGGACGAGAAGTCCCGTGGgaaaattcgaaaag
ttgcatgaaaagtcatttgctggatgaaaagtttgacggcgatcaaactt
catccaacatgatttccaacaattttcttaaaaagttgcaattttatgac
ttgcgcaaatgaacccaacatttgatccaacaataatgttggatcaaatg
ttggatcaaatgttggattcatttgccCCGGcctctcaatttttttaatt
ataatttttatatcaataaatatgaattattttcactttttcagcaCGGC
GAACGATTGCATGAGCTATACAACCGTCCAGACATTATCGGACGCTCTTT
ACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTATGCTGAATCAG
CGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGACAGCTGCGGCA
GACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGTTTTATGGGCTC
GTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACTTTGTAGACTTT
TTGATTGTAATTGGCTAACAATTATTTTACTGACTCTATTGGTTTTAATG
GTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCTAAAAGAAACTA
ACATTACTTCACTTCACCAAAATCGTATGCTTCAGGATTCtttagtttta
ccagaaaaccttAACCAATCAACGGTTTACAGAATCCATTTATCAAAGCT
ATTTGAGGAGGCTTTTATGGAATCAGTGATTGGATTTCGATGTAGAAAGA
AAAAGTACACTACAATAACAAATGAAGAGTTTCCTGAAAAGAACAGCTAA
ATGTGAGAGTGATTCGGAATAAACACATTTTGGAATGTGGTTAACGATAA
AAAGGGCTGCAGAATTATTATTGATCACGTGTTATGTTATGTTTACATGA
TGATGCGAGGAAGTTTTTTCAATCCTTGCAACACTTTGAAGGTCTATAGA
CATTGTGTGATGTcgtttcaattttgtttttattaagaATTGACTTTGTG
ACATTTCAATATCTAGAGGATCTTTTAATTAGAATTATAGAAATTGTTAG
tacaaaacaaaattataaatacaattttagtaaaaataaaatcgaTAGAA
TAATTCTTCtatttacaaataaattataaaagTGTGATGGtttattgttt
tgatgaatGATGCCATTCGAGTTGTAACTTATCTGCAATCCTATTGATCA
TGATAACTCGTAATCATTCCATAAGCTACAGGGAAAAGGAAGATAGTAAA
TGCTTCACAGAGGGCTTAAACTCACTACGTACACTGCATAACTATTTTTT
TACTGCTAAACTACTTCAATAGCGCTTCGTCGGGCAAACGTCatgattat
tacttctctcatttgaccgaaattcaatcccacaatccttttcgtcttaa
ttcaaaagtcgtgaaagttattactttttctttgtaattgagtgtaattt
gcgtgcaatcgtaataaacgcaaagggtgatgggattgaatttcagtcaa
acataaaaatcaatgtctatttttagattcgcgacGGTATG

Coding sequence (CDS) from alignment at scaffold_217:127564..140004+

>TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=CDS|length=4890bp|location=Sequence derived from alignment at scaffold_217:127564..140004+ (Clytia hemisphaerica)
NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA
CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA
ACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTGATGGGT
ATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCGAAGTAA
CACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAGTCGATG
ATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTAGAACAC
TCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACCGACGAG
AGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACTCGCTGA
TCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACACAGGGTT
ACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGATGATACA
AGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTCCAAC
CTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCGAATA
TCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCTATACAA
CCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGAAAGGGT
TAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACGACGTCG
CGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGTGAAGCC
ACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGATATCTAT
GCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTAACAATT
ATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCATGTAGA
CTCGCCTCCGAAATCTAAAAGAAACTAANNATCGAAAAGTGGATTTACAT
CCCAATCGCACCAGCTCCAGAACAATGACAGTGTTTTTAATGGCTCAGGA
AATACCACACTCTTCAATATCGAGAACAACCGACACGCTTTGGAGCTCTG
TCAGCAGATGTCAAACACTTTGATGGGTATACGACACAAGATTTGTAAAG
CTATCGATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATATTTCCGT
GAAATTTTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAGAGACGA
GAACCGATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCGcaaatt
ttttcaagCTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGTTTGAGT
GATCAGGTGGAGAACATCAACTCGCTGATCCCAACACCACGTCTCTATGA
CGACGAGAGTGTTCCGGAACACAGGGTTACCGAGAACGGCATCGAATTAA
CGGACAGGGGAAGATACCAGATGATACAAGGGATGAGACGATTCGATGTA
GTTTACGGCGGTGATCGAGAGTTCCAACCTTTGAGAAGCTTCGAATCACC
ACACCTTGTTCGATTATTGTATCGAATATCCACTCACCTCAATAATAAGc
aCGGCGAACGATTGCATGAGCTATACAACCGTCCAGACATTATCGGACGC
TCTTTACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTATGCTGA
ATCAGCGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGACAGCTG
CGGCAGACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGTTTTATG
GGCTCGTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACTTTGTAG
ACTTTTTGATTGTAATTGGCTAACAATTATTTTACTGACTCTATTGGTTT
TAATGGTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCTAAAAGA
AACTAANNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAA
CAATGACAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCG
AGAACAACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTG
ATGGGTATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCG
AAGTAACACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAG
TCGATGATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTA
GAACACTCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACC
GACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACT
CGCTGATCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACAC
AGGGTTACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGAT
GATACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGT
TCCAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTAT
CGAATATCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCT
ATACAACCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGA
AAGGGTTAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACG
ACGTCGCGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGT
GAAGCCACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGAT
ATCTATGCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTA
ACAATTATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCA
TGTAGACTCGCCTCCGAAATCTAAAAGAAACTAANNATCGAAAAGTGGAT
TTACATCCCAATCGCACCAGCTCCAGAACAATGACAGTGTTTTTAATGGC
TCAGGAAATACCACACTCTTCAATATCGAGAACAACCGACACGCTTTGGA
GCTCTGTCAGCAGATGTCAAACACTTTGATGGGTATACGACACAAGATTT
GTAAAGCTATCGATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATAT
TTCCGTGAAATTTTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAG
AGACGAGAACCGATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCG
caaattttttcaagCTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGT
TTGAGTGATCAGGTGGAGAACATCAACTCGCTGATCCCAACACCACGTCT
CTATGACGACGAGAGTGTTCCGGAACACAGGGTTACCGAGAACGGCATCG
AATTAACGGACAGGGGAAGATACCAGATGATACAAGGGATGAGACGATTC
GATGTAGTTTACGGCGGTGATCGAGAGTTCCAACCTTTGAGAAGCTTCGA
ATCACCACACCTTGTTCGATTATTGTATCGAATATCCACTCACCTCAATA
ATAAGcaCGGCGAACGATTGCATGAGCTATACAACCGTCCAGACATTATC
GGACGCTCTTTACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTA
TGCTGAATCAGCGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGA
CAGCTGCGGCAGACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGT
TTTATGGGCTCGTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACT
TTGTAGACTTTTTGATTGTAATTGGCTAACAATTATTTTACTGACTCTAT
TGGTTTTAATGGTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCT
AAAAGAAACTAANNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCT
CCAGAACAATGACAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCA
ATATCGAGAACAACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAAC
ACTTTGATGGGTATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAA
GAATCGAAGTAACACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGA
ACGAAGTCGATGATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGAT
TACTTAGAACACTCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGA
ACTACCGACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACA
TCAACTCGCTGATCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCG
GAACACAGGGTTACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATA
CCAGATGATACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATC
GAGAGTTCCAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTA
TTGTATCGAATATCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCA
TGAGCTATACAACCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTT
CACAGAAAGGGTTAAAACAAGAACATTATGCTGAATCAGCGATCAAAATG
CCTACGACGTCGCGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAA
TCAAGTGAAGCCACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTC
TTGGATATCTATGCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAAT
TGGCTAACAATTATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTT
ATACCATGTAGACTCGCCTCCGAAATCTAAAAGAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033207XLOC_033207Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052517-proteinTCONS_00052517-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052517-exon-scaffold_217-1491911889:127564..127671TCONS_00052517-exon-scaffold_217-1491911889:127564..127671Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:127564..127671TCONS_00052517-exon-scaffold_217-1510915933:127564..127671Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:127564..127671TCONS_00052517-exon-scaffold_217-1575043694:127564..127671Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:128094..128315TCONS_00052517-exon-scaffold_217-1491911889:128094..128315Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:128094..128315TCONS_00052517-exon-scaffold_217-1510915933:128094..128315Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:128094..128315TCONS_00052517-exon-scaffold_217-1575043694:128094..128315Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:129564..129725TCONS_00052517-exon-scaffold_217-1491911889:129564..129725Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:129564..129725TCONS_00052517-exon-scaffold_217-1510915933:129564..129725Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:129564..129725TCONS_00052517-exon-scaffold_217-1575043694:129564..129725Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:136860..136988TCONS_00052517-exon-scaffold_217-1491911889:136860..136988Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:136860..136988TCONS_00052517-exon-scaffold_217-1510915933:136860..136988Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:136860..136988TCONS_00052517-exon-scaffold_217-1575043694:136860..136988Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:138708..140004TCONS_00052517-exon-scaffold_217-1491911889:138708..140004Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:138708..140004TCONS_00052517-exon-scaffold_217-1510915933:138708..140004Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:138708..140004TCONS_00052517-exon-scaffold_217-1575043694:138708..140004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:127564..140004 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.6246	20.266	21.5205	22.4307	6.99508	4.58641	9.9768	9.21933	7.66514	8.26861	5.90116	6.7788	8.33228	9.50089	9.20158	10.8199	11.2799	11.1787	4.90717	4.9374	7.55867	8.16192	22.1307	18.0152	14.971	15.6045	4.7406	3.89439	14.9634	16.4339
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024129Sphingomy_SMPD4
Vocabulary: Molecular Function
TermDefinition
GO:0050290sphingomyelin phosphodiesterase D activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0050290 sphingomyelin phosphodiesterase D activity
Blast
[Close]
BLAST of TCONS_00052517 vs. Swiss-Prot (Human)
Match: NSMA3 (Sphingomyelin phosphodiesterase 4 OS=Homo sapiens GN=SMPD4 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.152e-20
Identity = 82/281 (29.18%), Postives = 132/281 (46.98%), Query Frame = 1 
Query:   76 TTLFNIENNRHALELCQQMSNTLMGIRHKICKAIDKEKNRSN------TWLGY----FREIFMMNEVDDFSCKRDENRLID-YLEHSCKAFANFFKLPELPTRGESESL-SDQVENINSLIPTPRLYDDESVPEHRVTENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRISTHLNNKHGERLHELYNRPDIIGRSLR-KISQKGLKQEHYAESAIKMPTTSRSQXXXXXXDVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLF 879
            T +F  E     L L Q ++      +H   K+I  +   S       +WLG+        +  N++D+    +D  R  D YLE + +     F+L E   R  + +L + Q EN             + +P+  V E+G+ LT  GRYQ+I G+RRF++ Y GD E QP+RS+E   LVR L+R+S+ +N++   ++  L +R D +G   R  +++ GL   H       +    R Q         +   PR++LRF+GS+  L  L  A  +  LF
Sbjct:  543 TPMFGPEARTLVLRLAQLITQA----KHT-AKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMG--QDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDEN-----------GKKQLPDCIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHL------LSPVGRRQV------AGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLF 793
The following BLAST results are available for this feature:
BLAST of TCONS_00052517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSMA33.152e-2029.18Sphingomyelin phosphodiesterase 4 OS=Homo sapiens ... [more]
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