TCONS_00052517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052517
Unique NameTCONS_00052517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=transcript|length=1918bp
NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA
CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA
ACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTGATGGGT
ATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCGAAGTAA
CACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAGTCGATG
ATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTAGAACAC
TCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACCGACGAG
AGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACTCGCTGA
TCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACACAGGGTT
ACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGATGATACA
AGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTCCAAC
CTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCGAATA
TCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCTATACAA
CCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGAAAGGGT
TAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACGACGTCG
CGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGTGAAGCC
ACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGATATCTAT
GCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTAACAATT
ATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCATGTAGA
CTCGCCTCCGAAATCTAAAAGAAACTAACATTACTTCACTTCACCAAAAT
CGTATGCTTCAGGATTCtttagttttaccagaaaaccttAACCAATCAAC
GGTTTACAGAATCCATTTATCAAAGCTATTTGAGGAGGCTTTTATGGAAT
CAGTGATTGGATTTCGATGTAGAAAGAAAAAGTACACTACAATAACAAAT
GAAGAGTTTCCTGAAAAGAACAGCTAAATGTGAGAGTGATTCGGAATAAA
CACATTTTGGAATGTGGTTAACGATAAAAAGGGCTGCAGAATTATTATTG
ATCACGTGTTATGTTATGTTTACATGATGATGCGAGGAAGTTTTTTCAAT
CCTTGCAACACTTTGAAGGTCTATAGACATTGTGTGATGTcgtttcaatt
ttgtttttattaagaATTGACTTTGTGACATTTCAATATCTAGAGGATCT
TTTAATTAGAATTATAGAAATTGTTAGtacaaaacaaaattataaataca
attttagtaaaaataaaatcgaTAGAATAATTCTTCtatttacaaataaa
ttataaaagTGTGATGGtttattgttttgatgaatGATGCCATTCGAGTT
GTAACTTATCTGCAATCCTATTGATCATGATAACTCGTAATCATTCCATA
AGCTACAGGGAAAAGGAAGATAGTAAATGCTTCACAGAGGGCTTAAACTC
ACTACGTACACTGCATAACTATTTTTTTACTGCTAAACTACTTCAATAGC
GCTTCGTCGGGCAAACGTCatgattattacttctctcatttgaccgaaat
tcaatcccacaatccttttcgtcttaattcaaaagtcgtgaaagttatta
ctttttctttgtaattgagtgtaatttgcgtgcaatcgtaataaacgcaa
agggtgatgggattgaatttcagtcaaacataaaaatcaatgtctatttt
tagattcgcgacGGTATG
Run BLAST on NCBI

protein sequence of TCONS_00052517-protein

>TCONS_00052517-protein ID=TCONS_00052517-protein|Name=TCONS_00052517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
XSKSGFTSQSHQLQNNDSVFNGSGNTTLFNIENNRHALELCQQMSNTLMG
IRHKICKAIDKEKNRSNTWLGYFREIFMMNEVDDFSCKRDENRLIDYLEH
SCKAFANFFKLPELPTRGESESLSDQVENINSLIPTPRLYDDESVPEHRV
TENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRI
STHLNNKHGERLHELYNRPDIIGRSLRKISQKGLKQEHYAESAIKMPTTS
RSQTTTAAADVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLFDCNWLTI
ILLTLLVLMVSVLYHVDSPPKSKRN
Run BLAST on NCBI

transcript from alignment at scaffold_217:127564..140004+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=transcript|length=12441bp|location=Sequence derived from alignment at scaffold_217:127564..140004+ (Clytia hemisphaerica)
NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA ACCGACACGTAGGTTTTTCTATTAATTACgtaacaaaaagtttgattatA TGAATTATATAGCTGCCGTAGCGTGAAGGTTGAAGATATGACCATGGTGC ACAATGTTGTGGGTTCGAACCCTAGTCGGGTCAAACCAAAGATTCTAAAG TTATAATTGATTTCTCTCTACTTGATGCTCAGTAACTTAAGAGAATTTTC AAGGACTATTatagaaatccagggaaaggagtggcgacCTCACATatggt cgcaaacttacttacttatataGAGGAGTCAGACCGGTTGTTGGTTATTG GTTTGTACGGATTTTTATAGGTCATTGGGCCAAACTTGTTCCTTGAACAG GCTATGCAAATGAATTAGCCCGAGAAAAAAACAGGAAACTAAACAAGAGC ACATGAAAATGATTATATTTTCTACCCTAGGCTTTGGAGCTCTGTCAGCA GATGTCAAACACTTTGATGGGTATACGACACAAGATTTGTAAAGCTATCG ATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATATTTCCGTGAAATT TTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAGAGACGAGAACCG ATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCGcaaattttttca aggtttgTAAATGAAGCTTTTTTTCCCAGATGATATCTTTTTGACCCATA CATGTTATTTTAAGCGtacaaaaaatcgaaaacaggctcagaaaTGCTTA GGAAGGCCCGACAAGGCTGGAAAATGCTTGTAAGGATGCTTTTATCCCAA GCAAAGATTTAGGGTAATTTTAAAAAATCCGTAAAATACCAACCAAGATC AGGAGAATACATTTTTCGTTAATGCTTAgtatatgcttaaatttttgcca tatctgagcctagttATACTCGTGAACACTCGACTTTGTAAAATTAGATT GTTCACAACTCCGACGGGGAGGATTTTTTCCCATTTGACCTTCTGGATCT GTAATACGGGAAGTATGTTTTAAAGTTGAACATAAGCTTTGTTTGCATAG AGAAATGTTTTTTGGTGAAAGTCATACAAAATTCAACCAATAAACATCAT TCGGAAATGAGATTTTTATCGGTTTTTTCACACACGTCTGCTTTTAGTGT ATCAATAGTTATGTACTTATCGTTTTTGTCAAGGCAAGAAAAAAAGGGCA AATCTCAACATTAGTATCTTaggaaaatgagaatttttctaTAACATAAA CTTTTGACAATNGTTTTTTACACACGTCTGCTTTTAGGGTATCAATAGTT ATGTATTTATCGTTTTTGTCaatgcaagaaaaaaaaaatggcaaatCTCA AAATAGTATCTTaggaaaatgagaatttttctaTAACATAAACTTTGGAC AATGAgtgaaatcaagtgcgtattacttataGGAAtaaacggatcctgca ctaatgtacttcccagttttctcaaaggtaacgaagcgagtgggaattga acccacgacctctcgcttgccgggcgattgctctcccaactgCGCTATCG GTTCGTTGCTATTACACTAGTTCGTAGTAGACGAGGGGAGCGACGTGCTC AATGTTCACCATCCGGTACCTGAATTCTACGAATCAATGGAATTGCCACG GACTGAGACACAGCTAGTGTCCAATCTCCAACCAACCCGCTAACTTTGAG AGAACTGTTAGGCTATGTACATTGGGGAGAGGCATTAGCCCAACGGACAA TGAGATTCGGCTTTTGGTCATGTGGATGAATTTCTTTCATTGTCAAAGGT TCATCTTATAGAAAGATTCTCAATATGCTAGAGACTCATTTTGAGATTGC TCCTTCTGCTTTGACAACGATGTTATATATCTTTTCTTTGCTTACTGTAG CTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGT GGAGAACATCAACTCGCTGATCCCAACACCACGTCTCTATGACGACGAGA GTGTTCCGGAACACAGGGTTACCGAGAACGGCATCGAATTAACGGACAGG GGAAGATACCAGGTATATTATtcttttttaccctttttcggGGTTGGCAC TCACTTTTTACCGAAATTCGTTCATATTCCTAGGGttgtttttgaggatt tttagtAAAGATTGCATTTCGttgaactaattttcgcggtagaaACCTAA AAACGCTGTGGAAAATAGTGAGAGGTCTAGGGATAGAGAAACGACGCGTG CGCAATCACGTgacttatacacgttttttagaTTGCGTTCTGTACATAGT TTTTATATTCATTCTAACATATATTCAGTAGCGGAAAGACGTATAAAGTT ATATCTAAAATCTTCAATGTTTCTACGTTTTTACTGATACTCATGATCCA GAACTATTAAGAGTTAAGAAGATTTTACATGGCGCCCGATGAGGGACAGC AGAGAAGTCAGCATTCGAATCGTTGAACTGTACAAAATGAAGTAAGAGCA GCACGgtatatacaaatttacgtaTCATCTAACATTTGTGACGAATTTAC AAatctatttgatttttttcacaccgatatctttcttctttgctatcttt cctttattttctttttacggatagttttggatgtttttggcggatttttt ctggattttttcgATACGGTTTAGCAATGTAAGAAAATTGGCAAGAGAGA GGGTCTGAGGTTAGTTTTGACTACAACGGTAAAGTCAGCACAAGATTATC TAACAGGAGAAGACATTCAACGGTCAAGGCTAGTTGGTTTCAAGAGAACA GTTCAAGAAGTTGTAAAACAACTCGAATCAGCAAACGAGGATGTCATCAA AGGTTTAGAAGCAGATAAGATTGGCGAGGACATAGTTGAGTCTTTCACTT ATGTTCAGTCAGCCAATGACTTAGAGGCAAGTATTGACATTAAGATGCAA GAGTTAGTTTTAAAAGACAGCCCTGTTTCAAGCTCAGTCTCATCCATAGC TTCATCCAGCAACAGACAGACATGCAGGTTGCCAAAGATGGAGCTTCCCA GTTTCAAGGGAGACCCTCTTCTTTGGCAAGGATTTTGGGACCAGTACAAT GTTGCAattcatgaaaatgaaagtttaaCAGATATTGACAGGTTCAATTA CTTGAAGAGATTTTTGAGTGGCGAGGCTTTAAGATCAGTCTCAGGCTTAA CTTTGAATAGTGAGAATTATCAAGAAGCTATCCAGATATTGAAAGACAGG TATGGAAACGAACAGATTCTAATTTCGGCACATATGGAAGCGTTGTTAAA GATGAACAAGGTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTT GGTTATGGTTTGTCGATGTTGTTGCAAGTGTGGGTAAAGTAACGGTGGAG AGGTTTGTTTTGGTTCCAGCAGATTTGATTAGAGGATGTGAGTTACATGG GTTTTGTGATAGTTCGTCGGAAGTTTATTGCGCAGTTGTGTATTTGAGAG TGCTGATGGGGACTGATGTGAAGACGTCTTTATTNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNCGATGACATAATGAAAGAGAGTATCGACTTAACGGAAACTGACAATAA CGTGACAACGACTTTGACAATGACGAAAATACCTGCTACCAACTTACACG CCATCATTGAGTACGAACGTTTCGGCTCACTCGAGAAGCTTATAAGTATA CTAAGCTACGTCAGACGATTTATTGAGAATttgaggaagaagaagaaagg aaAACCATTATCATTGGACACTCTTTCAACTGAAGAACGAAAAGACACCA TGGAACTGATTATTGCAAACGAACAACATCAACTGAAGGGACAAGAGGAC taccaaaaattgaaatcatcGTTAAACTTGTTTGAAGATCAGAAAGGACT TTTACGGCTACGCGGACGATTCGGAAATTCAACATTACAATACCAAGAAA AGCATCCACTCATACTCAGAACAGACAGTGTATTTACGGAACAACTTATA AAGGAGACACACGAGAAAGTATTCCATCACGGCGTGGAATCAACACTGGC CCATTTACGAACTAATTATTGGATTGTCAGAGGAAGGAAGACAGTCAAAA ATTTACTATATAAGTGTACCTTATGCAAACGTTATCAAGGAAAGACAATA TCACCACCAGCTAGTCCTGACTTGCCAGATTTTCGTTTAAGTTTTAATGC TTTCAATGCCACAGGATTGGACTACGCTGGACCCTTGTATGTATAAAGTG AAGATAAGAAAGAGACTCAGAAGGTCTACATTCTACTCCTAACATGTGCC GGAACTCGTGCTATCCATCTAGAGGTCTGTCCAGACATGAAAAATTCTGC TTTCATTCGtgcttttaaaagattttcgtcACGCCGAGGTGTACCTTGTG TGGTTATTCACGacaatttcaaaactttcaaatcgaaagaagttaaactt tttttcagcCAACAGGACATTGAACAACAATTTATTTTACCTTCTTCCCC CTGGTGGGGTGGAATGTACGAGCGTCTTGTGCGCAGCgtgaaaatatctt taaagaaaacattaggTAAATCCCTAGTAACACTAGAAGAATTGCAGACG ATCTTATGTCAGATTGAGGCGTTTATTAACAGCAGACCACTATGTTACGT AAACGAAGATGACATCGACGAGACTATCACACCAAACCATTTAATTTTTG GGAAGAATATCTTTCACAAGCAACACGGTAATGCtgaagttttgttttta gacAATAATGACGACTGTACAAAGAGAATGAGACACATAAAAATCATTCT GTCACATTTCCAAAAtagatttgaaaaagtttaccTTCAAGAATTGAGGC AAAATAACATTTATAGAAAGAATACGGATAATGATGTAAAGTTGCGCGTT GGAGAGGTTATTTTAATTAAAGGAGAAAAGATNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGAAAGAC GTATAAAGTTATATCTAAAATCTTCAATGTTTCTACGTTTTTACTGATAC TCATGATCCAGAACTATTAAGAGTTAAGAAGATTTTACAAACGCGAagta gttcccgcgaaaattagtttcgtTAAAAGTATTATCTGTGAAAggtaaaa acttaaaaaacccTAAATTGGGTCAACTTAAAGCTTCCAAAttttatact ttaatgggatgaactttcgcggggattaaaatccgcgaaattaagtccca atggaaatttggaagggtcTCATCCTCGAAAaaagtaaaagtcacaaaat tgtgaaaatattgccacccaatagtgcctaacgcgaaattaagtccccgc gaattttcgaatttcgcggataggctcaaccgcgaaatttaatccccgcg aaagtttatcccattaaagtactcaattatttcttattttgtATAGATGA TACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTC CAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCG AATATCCACTCACCTCAATAATAAGGTGATcaattacttttatttttatt ttcaccaagGTTGCAACTTTTCTGTAGACAGAAATCTGTCCATAAAACTT CTCATTAGAACTTCCTTTCCGATAACAAGCTTTGAATGTGGAACTTATGT AAAactgaaatataattttttgcgTATCGTCCATATTCATCAAGGATGTT TTACTTTCCTTCCTGATACGGTGAGAAAATATCCTCCTTTTTAGCCAACC TTTCGCCACACTTCTAGAAGTGTGCAACAATTAGTTTTGAATCTCGAGAT TACAAGTAATTTTAACAACTCTATTCCCAATTATCACCTCAAAAGCTCCC TATTCATgaatgatatgcaccattgcaatgtcttccacggacccaacagc tgattggttgtatgtgacatattgactgattttacgtcacttacaaccaa tcagctgctgggtccgtgatgtaatatcagaagacattgcaatggtgtat atcatgaattcagCAACTAAAGGCCGGCtcaaatgaatccaacattcaAT TGGCCTATACTAGACGCCACGGCTTTTTTCTACGCTGTAACGTCTATTCC aatttgcgactttttcgaatgttttgagcccaggttttcgggctctaaac attcgattttttgacgtcattttaaacgtttgaagctcctgcagtatcAA AAAAaccgaatttgcgtcaaaacacttgaaaggcttctatttttcgaaaa tcgtcaaagtggaactcacagccaattcgattgacttccaaatttgccat actcaccaactttgccaaatctacaattttaatgtcaaaagatcacagtt tcatggcaaatttgtacatcgctacgccgccattatgatttccgttttgt gatgcttagtcagcagttttctgtcggcgtttttaaccaatcaaattacc gatcggcattgttttgctttagcattggaaggtcttctatttttcaaaat ctttggcaaaagtggcaaaattggagtgaaaagaacacaggtctcgTGGN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt tgctttagcattggaaggtcttctatttttcaaaatctttggcaaaagtg gcaaaattggagcgaaaagaacacaggtctcgtgggaacagtgttttgta cGGAGACATAcggaggtaagttccaaaaatgccaagaatgccacattcac cacatcttttttatttggcatttatggcactcaaattttgccacatttgc caaatttttgtcaatcgaatgcaaaataattggcaatcagggcaaaaaag gcatattttgaagtcaatcgaattggctgtaagaaacgggatgaaaaatc ccggtttttggtgaggtactcGCTAACATTCAATCCAACATTTCAAATTT ATTGTTGGACGAAATGTTGGACGAGAAGTCCCGTGGgaaaattcgaaaag ttgcatgaaaagtcatttgctggatgaaaagtttgacggcgatcaaactt catccaacatgatttccaacaattttcttaaaaagttgcaattttatgac ttgcgcaaatgaacccaacatttgatccaacaataatgttggatcaaatg ttggatcaaatgttggattcatttgccCCGGcctctcaatttttttaatt ataatttttatatcaataaatatgaattattttcactttttcagcaCGGC GAACGATTGCATGAGCTATACAACCGTCCAGACATTATCGGACGCTCTTT ACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTATGCTGAATCAG CGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGACAGCTGCGGCA GACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGTTTTATGGGCTC GTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACTTTGTAGACTTT TTGATTGTAATTGGCTAACAATTATTTTACTGACTCTATTGGTTTTAATG GTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCTAAAAGAAACTA ACATTACTTCACTTCACCAAAATCGTATGCTTCAGGATTCtttagtttta ccagaaaaccttAACCAATCAACGGTTTACAGAATCCATTTATCAAAGCT ATTTGAGGAGGCTTTTATGGAATCAGTGATTGGATTTCGATGTAGAAAGA AAAAGTACACTACAATAACAAATGAAGAGTTTCCTGAAAAGAACAGCTAA ATGTGAGAGTGATTCGGAATAAACACATTTTGGAATGTGGTTAACGATAA AAAGGGCTGCAGAATTATTATTGATCACGTGTTATGTTATGTTTACATGA TGATGCGAGGAAGTTTTTTCAATCCTTGCAACACTTTGAAGGTCTATAGA CATTGTGTGATGTcgtttcaattttgtttttattaagaATTGACTTTGTG ACATTTCAATATCTAGAGGATCTTTTAATTAGAATTATAGAAATTGTTAG tacaaaacaaaattataaatacaattttagtaaaaataaaatcgaTAGAA TAATTCTTCtatttacaaataaattataaaagTGTGATGGtttattgttt tgatgaatGATGCCATTCGAGTTGTAACTTATCTGCAATCCTATTGATCA TGATAACTCGTAATCATTCCATAAGCTACAGGGAAAAGGAAGATAGTAAA TGCTTCACAGAGGGCTTAAACTCACTACGTACACTGCATAACTATTTTTT TACTGCTAAACTACTTCAATAGCGCTTCGTCGGGCAAACGTCatgattat tacttctctcatttgaccgaaattcaatcccacaatccttttcgtcttaa ttcaaaagtcgtgaaagttattactttttctttgtaattgagtgtaattt gcgtgcaatcgtaataaacgcaaagggtgatgggattgaatttcagtcaa acataaaaatcaatgtctatttttagattcgcgacGGTATG

Coding sequence (CDS) from alignment at scaffold_217:127564..140004+

>TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=CDS|length=4890bp|location=Sequence derived from alignment at scaffold_217:127564..140004+ (Clytia hemisphaerica)
NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA
CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA
ACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTGATGGGT
ATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCGAAGTAA
CACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAGTCGATG
ATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTAGAACAC
TCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACCGACGAG
AGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACTCGCTGA
TCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACACAGGGTT
ACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGATGATACA
AGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTCCAAC
CTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCGAATA
TCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCTATACAA
CCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGAAAGGGT
TAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACGACGTCG
CGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGTGAAGCC
ACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGATATCTAT
GCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTAACAATT
ATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCATGTAGA
CTCGCCTCCGAAATCTAAAAGAAACTAANNATCGAAAAGTGGATTTACAT
CCCAATCGCACCAGCTCCAGAACAATGACAGTGTTTTTAATGGCTCAGGA
AATACCACACTCTTCAATATCGAGAACAACCGACACGCTTTGGAGCTCTG
TCAGCAGATGTCAAACACTTTGATGGGTATACGACACAAGATTTGTAAAG
CTATCGATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATATTTCCGT
GAAATTTTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAGAGACGA
GAACCGATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCGcaaatt
ttttcaagCTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGTTTGAGT
GATCAGGTGGAGAACATCAACTCGCTGATCCCAACACCACGTCTCTATGA
CGACGAGAGTGTTCCGGAACACAGGGTTACCGAGAACGGCATCGAATTAA
CGGACAGGGGAAGATACCAGATGATACAAGGGATGAGACGATTCGATGTA
GTTTACGGCGGTGATCGAGAGTTCCAACCTTTGAGAAGCTTCGAATCACC
ACACCTTGTTCGATTATTGTATCGAATATCCACTCACCTCAATAATAAGc
aCGGCGAACGATTGCATGAGCTATACAACCGTCCAGACATTATCGGACGC
TCTTTACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTATGCTGA
ATCAGCGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGACAGCTG
CGGCAGACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGTTTTATG
GGCTCGTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACTTTGTAG
ACTTTTTGATTGTAATTGGCTAACAATTATTTTACTGACTCTATTGGTTT
TAATGGTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCTAAAAGA
AACTAANNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAA
CAATGACAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCG
AGAACAACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTG
ATGGGTATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCG
AAGTAACACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAG
TCGATGATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTA
GAACACTCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACC
GACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACT
CGCTGATCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACAC
AGGGTTACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGAT
GATACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGT
TCCAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTAT
CGAATATCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCT
ATACAACCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGA
AAGGGTTAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACG
ACGTCGCGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGT
GAAGCCACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGAT
ATCTATGCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTA
ACAATTATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCA
TGTAGACTCGCCTCCGAAATCTAAAAGAAACTAANNATCGAAAAGTGGAT
TTACATCCCAATCGCACCAGCTCCAGAACAATGACAGTGTTTTTAATGGC
TCAGGAAATACCACACTCTTCAATATCGAGAACAACCGACACGCTTTGGA
GCTCTGTCAGCAGATGTCAAACACTTTGATGGGTATACGACACAAGATTT
GTAAAGCTATCGATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATAT
TTCCGTGAAATTTTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAG
AGACGAGAACCGATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCG
caaattttttcaagCTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGT
TTGAGTGATCAGGTGGAGAACATCAACTCGCTGATCCCAACACCACGTCT
CTATGACGACGAGAGTGTTCCGGAACACAGGGTTACCGAGAACGGCATCG
AATTAACGGACAGGGGAAGATACCAGATGATACAAGGGATGAGACGATTC
GATGTAGTTTACGGCGGTGATCGAGAGTTCCAACCTTTGAGAAGCTTCGA
ATCACCACACCTTGTTCGATTATTGTATCGAATATCCACTCACCTCAATA
ATAAGcaCGGCGAACGATTGCATGAGCTATACAACCGTCCAGACATTATC
GGACGCTCTTTACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTA
TGCTGAATCAGCGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGA
CAGCTGCGGCAGACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGT
TTTATGGGCTCGTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACT
TTGTAGACTTTTTGATTGTAATTGGCTAACAATTATTTTACTGACTCTAT
TGGTTTTAATGGTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCT
AAAAGAAACTAANNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCT
CCAGAACAATGACAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCA
ATATCGAGAACAACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAAC
ACTTTGATGGGTATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAA
GAATCGAAGTAACACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGA
ACGAAGTCGATGATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGAT
TACTTAGAACACTCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGA
ACTACCGACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACA
TCAACTCGCTGATCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCG
GAACACAGGGTTACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATA
CCAGATGATACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATC
GAGAGTTCCAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTA
TTGTATCGAATATCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCA
TGAGCTATACAACCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTT
CACAGAAAGGGTTAAAACAAGAACATTATGCTGAATCAGCGATCAAAATG
CCTACGACGTCGCGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAA
TCAAGTGAAGCCACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTC
TTGGATATCTATGCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAAT
TGGCTAACAATTATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTT
ATACCATGTAGACTCGCCTCCGAAATCTAAAAGAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033207XLOC_033207Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052517-proteinTCONS_00052517-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052517-exon-scaffold_217-1491911889:127564..127671TCONS_00052517-exon-scaffold_217-1491911889:127564..127671Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:127564..127671TCONS_00052517-exon-scaffold_217-1510915933:127564..127671Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:127564..127671TCONS_00052517-exon-scaffold_217-1575043694:127564..127671Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:128094..128315TCONS_00052517-exon-scaffold_217-1491911889:128094..128315Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:128094..128315TCONS_00052517-exon-scaffold_217-1510915933:128094..128315Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:128094..128315TCONS_00052517-exon-scaffold_217-1575043694:128094..128315Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:129564..129725TCONS_00052517-exon-scaffold_217-1491911889:129564..129725Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:129564..129725TCONS_00052517-exon-scaffold_217-1510915933:129564..129725Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:129564..129725TCONS_00052517-exon-scaffold_217-1575043694:129564..129725Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:136860..136988TCONS_00052517-exon-scaffold_217-1491911889:136860..136988Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:136860..136988TCONS_00052517-exon-scaffold_217-1510915933:136860..136988Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:136860..136988TCONS_00052517-exon-scaffold_217-1575043694:136860..136988Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1491911889:138708..140004TCONS_00052517-exon-scaffold_217-1491911889:138708..140004Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1510915933:138708..140004TCONS_00052517-exon-scaffold_217-1510915933:138708..140004Clytia hemisphaericaexon
TCONS_00052517-exon-scaffold_217-1575043694:138708..140004TCONS_00052517-exon-scaffold_217-1575043694:138708..140004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:127564..140004 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.6246 20.266 21.5205 22.4307 6.99508 4.58641 9.9768 9.21933 7.66514 8.26861 5.90116 6.7788 8.33228 9.50089 9.20158 10.8199 11.2799 11.1787 4.90717 4.9374 7.55867 8.16192 22.1307 18.0152 14.971 15.6045 4.7406 3.89439 14.9634 16.4339
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024129Sphingomy_SMPD4
Vocabulary: Molecular Function
TermDefinition
GO:0050290sphingomyelin phosphodiesterase D activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0050290 sphingomyelin phosphodiesterase D activity
Blast
BLAST of TCONS_00052517 vs. Swiss-Prot (Human)
Match: NSMA3 (Sphingomyelin phosphodiesterase 4 OS=Homo sapiens GN=SMPD4 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.152e-20
Identity = 82/281 (29.18%), Postives = 132/281 (46.98%), Query Frame = 1
Query:   76 TTLFNIENNRHALELCQQMSNTLMGIRHKICKAIDKEKNRSN------TWLGY----FREIFMMNEVDDFSCKRDENRLID-YLEHSCKAFANFFKLPELPTRGESESL-SDQVENINSLIPTPRLYDDESVPEHRVTENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRISTHLNNKHGERLHELYNRPDIIGRSLR-KISQKGLKQEHYAESAIKMPTTSRSQXXXXXXDVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLF 879
            T +F  E     L L Q ++      +H   K+I  +   S       +WLG+        +  N++D+    +D  R  D YLE + +     F+L E   R  + +L + Q EN             + +P+  V E+G+ LT  GRYQ+I G+RRF++ Y GD E QP+RS+E   LVR L+R+S+ +N++   ++  L +R D +G   R  +++ GL   H       +    R Q         +   PR++LRF+GS+  L  L  A  +  LF
Sbjct:  543 TPMFGPEARTLVLRLAQLITQA----KHT-AKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMG--QDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDEN-----------GKKQLPDCIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHL------LSPVGRRQV------AGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLF 793          
The following BLAST results are available for this feature:
BLAST of TCONS_00052517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSMA33.152e-2029.18Sphingomyelin phosphodiesterase 4 OS=Homo sapiens ... [more]
back to top