|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=transcript|length=1918bp NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA ACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTGATGGGT ATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCGAAGTAA CACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAGTCGATG ATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTAGAACAC TCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACCGACGAG AGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACTCGCTGA TCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACACAGGGTT ACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGATGATACA AGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTCCAAC CTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCGAATA TCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCTATACAA CCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGAAAGGGT TAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACGACGTCG CGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGTGAAGCC ACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGATATCTAT GCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTAACAATT ATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCATGTAGA CTCGCCTCCGAAATCTAAAAGAAACTAACATTACTTCACTTCACCAAAAT CGTATGCTTCAGGATTCtttagttttaccagaaaaccttAACCAATCAAC GGTTTACAGAATCCATTTATCAAAGCTATTTGAGGAGGCTTTTATGGAAT CAGTGATTGGATTTCGATGTAGAAAGAAAAAGTACACTACAATAACAAAT GAAGAGTTTCCTGAAAAGAACAGCTAAATGTGAGAGTGATTCGGAATAAA CACATTTTGGAATGTGGTTAACGATAAAAAGGGCTGCAGAATTATTATTG ATCACGTGTTATGTTATGTTTACATGATGATGCGAGGAAGTTTTTTCAAT CCTTGCAACACTTTGAAGGTCTATAGACATTGTGTGATGTcgtttcaatt ttgtttttattaagaATTGACTTTGTGACATTTCAATATCTAGAGGATCT TTTAATTAGAATTATAGAAATTGTTAGtacaaaacaaaattataaataca attttagtaaaaataaaatcgaTAGAATAATTCTTCtatttacaaataaa ttataaaagTGTGATGGtttattgttttgatgaatGATGCCATTCGAGTT GTAACTTATCTGCAATCCTATTGATCATGATAACTCGTAATCATTCCATA AGCTACAGGGAAAAGGAAGATAGTAAATGCTTCACAGAGGGCTTAAACTC ACTACGTACACTGCATAACTATTTTTTTACTGCTAAACTACTTCAATAGC GCTTCGTCGGGCAAACGTCatgattattacttctctcatttgaccgaaat tcaatcccacaatccttttcgtcttaattcaaaagtcgtgaaagttatta ctttttctttgtaattgagtgtaatttgcgtgcaatcgtaataaacgcaa agggtgatgggattgaatttcagtcaaacataaaaatcaatgtctatttt tagattcgcgacGGTATG Run BLAST on NCBI protein sequence of TCONS_00052517-protein >TCONS_00052517-protein ID=TCONS_00052517-protein|Name=TCONS_00052517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
XSKSGFTSQSHQLQNNDSVFNGSGNTTLFNIENNRHALELCQQMSNTLMG IRHKICKAIDKEKNRSNTWLGYFREIFMMNEVDDFSCKRDENRLIDYLEH SCKAFANFFKLPELPTRGESESLSDQVENINSLIPTPRLYDDESVPEHRV TENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRI STHLNNKHGERLHELYNRPDIIGRSLRKISQKGLKQEHYAESAIKMPTTS RSQTTTAAADVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLFDCNWLTI ILLTLLVLMVSVLYHVDSPPKSKRN Run BLAST on NCBI transcript from alignment at scaffold_217:127564..140004+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=transcript|length=12441bp|location=Sequence derived from alignment at scaffold_217:127564..140004+ (Clytia hemisphaerica) NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA
CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA
ACCGACACGTAGGTTTTTCTATTAATTACgtaacaaaaagtttgattatA
TGAATTATATAGCTGCCGTAGCGTGAAGGTTGAAGATATGACCATGGTGC
ACAATGTTGTGGGTTCGAACCCTAGTCGGGTCAAACCAAAGATTCTAAAG
TTATAATTGATTTCTCTCTACTTGATGCTCAGTAACTTAAGAGAATTTTC
AAGGACTATTatagaaatccagggaaaggagtggcgacCTCACATatggt
cgcaaacttacttacttatataGAGGAGTCAGACCGGTTGTTGGTTATTG
GTTTGTACGGATTTTTATAGGTCATTGGGCCAAACTTGTTCCTTGAACAG
GCTATGCAAATGAATTAGCCCGAGAAAAAAACAGGAAACTAAACAAGAGC
ACATGAAAATGATTATATTTTCTACCCTAGGCTTTGGAGCTCTGTCAGCA
GATGTCAAACACTTTGATGGGTATACGACACAAGATTTGTAAAGCTATCG
ATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATATTTCCGTGAAATT
TTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAGAGACGAGAACCG
ATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCGcaaattttttca
aggtttgTAAATGAAGCTTTTTTTCCCAGATGATATCTTTTTGACCCATA
CATGTTATTTTAAGCGtacaaaaaatcgaaaacaggctcagaaaTGCTTA
GGAAGGCCCGACAAGGCTGGAAAATGCTTGTAAGGATGCTTTTATCCCAA
GCAAAGATTTAGGGTAATTTTAAAAAATCCGTAAAATACCAACCAAGATC
AGGAGAATACATTTTTCGTTAATGCTTAgtatatgcttaaatttttgcca
tatctgagcctagttATACTCGTGAACACTCGACTTTGTAAAATTAGATT
GTTCACAACTCCGACGGGGAGGATTTTTTCCCATTTGACCTTCTGGATCT
GTAATACGGGAAGTATGTTTTAAAGTTGAACATAAGCTTTGTTTGCATAG
AGAAATGTTTTTTGGTGAAAGTCATACAAAATTCAACCAATAAACATCAT
TCGGAAATGAGATTTTTATCGGTTTTTTCACACACGTCTGCTTTTAGTGT
ATCAATAGTTATGTACTTATCGTTTTTGTCAAGGCAAGAAAAAAAGGGCA
AATCTCAACATTAGTATCTTaggaaaatgagaatttttctaTAACATAAA
CTTTTGACAATNGTTTTTTACACACGTCTGCTTTTAGGGTATCAATAGTT
ATGTATTTATCGTTTTTGTCaatgcaagaaaaaaaaaatggcaaatCTCA
AAATAGTATCTTaggaaaatgagaatttttctaTAACATAAACTTTGGAC
AATGAgtgaaatcaagtgcgtattacttataGGAAtaaacggatcctgca
ctaatgtacttcccagttttctcaaaggtaacgaagcgagtgggaattga
acccacgacctctcgcttgccgggcgattgctctcccaactgCGCTATCG
GTTCGTTGCTATTACACTAGTTCGTAGTAGACGAGGGGAGCGACGTGCTC
AATGTTCACCATCCGGTACCTGAATTCTACGAATCAATGGAATTGCCACG
GACTGAGACACAGCTAGTGTCCAATCTCCAACCAACCCGCTAACTTTGAG
AGAACTGTTAGGCTATGTACATTGGGGAGAGGCATTAGCCCAACGGACAA
TGAGATTCGGCTTTTGGTCATGTGGATGAATTTCTTTCATTGTCAAAGGT
TCATCTTATAGAAAGATTCTCAATATGCTAGAGACTCATTTTGAGATTGC
TCCTTCTGCTTTGACAACGATGTTATATATCTTTTCTTTGCTTACTGTAG
CTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGT
GGAGAACATCAACTCGCTGATCCCAACACCACGTCTCTATGACGACGAGA
GTGTTCCGGAACACAGGGTTACCGAGAACGGCATCGAATTAACGGACAGG
GGAAGATACCAGGTATATTATtcttttttaccctttttcggGGTTGGCAC
TCACTTTTTACCGAAATTCGTTCATATTCCTAGGGttgtttttgaggatt
tttagtAAAGATTGCATTTCGttgaactaattttcgcggtagaaACCTAA
AAACGCTGTGGAAAATAGTGAGAGGTCTAGGGATAGAGAAACGACGCGTG
CGCAATCACGTgacttatacacgttttttagaTTGCGTTCTGTACATAGT
TTTTATATTCATTCTAACATATATTCAGTAGCGGAAAGACGTATAAAGTT
ATATCTAAAATCTTCAATGTTTCTACGTTTTTACTGATACTCATGATCCA
GAACTATTAAGAGTTAAGAAGATTTTACATGGCGCCCGATGAGGGACAGC
AGAGAAGTCAGCATTCGAATCGTTGAACTGTACAAAATGAAGTAAGAGCA
GCACGgtatatacaaatttacgtaTCATCTAACATTTGTGACGAATTTAC
AAatctatttgatttttttcacaccgatatctttcttctttgctatcttt
cctttattttctttttacggatagttttggatgtttttggcggatttttt
ctggattttttcgATACGGTTTAGCAATGTAAGAAAATTGGCAAGAGAGA
GGGTCTGAGGTTAGTTTTGACTACAACGGTAAAGTCAGCACAAGATTATC
TAACAGGAGAAGACATTCAACGGTCAAGGCTAGTTGGTTTCAAGAGAACA
GTTCAAGAAGTTGTAAAACAACTCGAATCAGCAAACGAGGATGTCATCAA
AGGTTTAGAAGCAGATAAGATTGGCGAGGACATAGTTGAGTCTTTCACTT
ATGTTCAGTCAGCCAATGACTTAGAGGCAAGTATTGACATTAAGATGCAA
GAGTTAGTTTTAAAAGACAGCCCTGTTTCAAGCTCAGTCTCATCCATAGC
TTCATCCAGCAACAGACAGACATGCAGGTTGCCAAAGATGGAGCTTCCCA
GTTTCAAGGGAGACCCTCTTCTTTGGCAAGGATTTTGGGACCAGTACAAT
GTTGCAattcatgaaaatgaaagtttaaCAGATATTGACAGGTTCAATTA
CTTGAAGAGATTTTTGAGTGGCGAGGCTTTAAGATCAGTCTCAGGCTTAA
CTTTGAATAGTGAGAATTATCAAGAAGCTATCCAGATATTGAAAGACAGG
TATGGAAACGAACAGATTCTAATTTCGGCACATATGGAAGCGTTGTTAAA
GATGAACAAGGTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTT
GGTTATGGTTTGTCGATGTTGTTGCAAGTGTGGGTAAAGTAACGGTGGAG
AGGTTTGTTTTGGTTCCAGCAGATTTGATTAGAGGATGTGAGTTACATGG
GTTTTGTGATAGTTCGTCGGAAGTTTATTGCGCAGTTGTGTATTTGAGAG
TGCTGATGGGGACTGATGTGAAGACGTCTTTATTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGATGACATAATGAAAGAGAGTATCGACTTAACGGAAACTGACAATAA
CGTGACAACGACTTTGACAATGACGAAAATACCTGCTACCAACTTACACG
CCATCATTGAGTACGAACGTTTCGGCTCACTCGAGAAGCTTATAAGTATA
CTAAGCTACGTCAGACGATTTATTGAGAATttgaggaagaagaagaaagg
aaAACCATTATCATTGGACACTCTTTCAACTGAAGAACGAAAAGACACCA
TGGAACTGATTATTGCAAACGAACAACATCAACTGAAGGGACAAGAGGAC
taccaaaaattgaaatcatcGTTAAACTTGTTTGAAGATCAGAAAGGACT
TTTACGGCTACGCGGACGATTCGGAAATTCAACATTACAATACCAAGAAA
AGCATCCACTCATACTCAGAACAGACAGTGTATTTACGGAACAACTTATA
AAGGAGACACACGAGAAAGTATTCCATCACGGCGTGGAATCAACACTGGC
CCATTTACGAACTAATTATTGGATTGTCAGAGGAAGGAAGACAGTCAAAA
ATTTACTATATAAGTGTACCTTATGCAAACGTTATCAAGGAAAGACAATA
TCACCACCAGCTAGTCCTGACTTGCCAGATTTTCGTTTAAGTTTTAATGC
TTTCAATGCCACAGGATTGGACTACGCTGGACCCTTGTATGTATAAAGTG
AAGATAAGAAAGAGACTCAGAAGGTCTACATTCTACTCCTAACATGTGCC
GGAACTCGTGCTATCCATCTAGAGGTCTGTCCAGACATGAAAAATTCTGC
TTTCATTCGtgcttttaaaagattttcgtcACGCCGAGGTGTACCTTGTG
TGGTTATTCACGacaatttcaaaactttcaaatcgaaagaagttaaactt
tttttcagcCAACAGGACATTGAACAACAATTTATTTTACCTTCTTCCCC
CTGGTGGGGTGGAATGTACGAGCGTCTTGTGCGCAGCgtgaaaatatctt
taaagaaaacattaggTAAATCCCTAGTAACACTAGAAGAATTGCAGACG
ATCTTATGTCAGATTGAGGCGTTTATTAACAGCAGACCACTATGTTACGT
AAACGAAGATGACATCGACGAGACTATCACACCAAACCATTTAATTTTTG
GGAAGAATATCTTTCACAAGCAACACGGTAATGCtgaagttttgttttta
gacAATAATGACGACTGTACAAAGAGAATGAGACACATAAAAATCATTCT
GTCACATTTCCAAAAtagatttgaaaaagtttaccTTCAAGAATTGAGGC
AAAATAACATTTATAGAAAGAATACGGATAATGATGTAAAGTTGCGCGTT
GGAGAGGTTATTTTAATTAAAGGAGAAAAGATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGAAAGAC
GTATAAAGTTATATCTAAAATCTTCAATGTTTCTACGTTTTTACTGATAC
TCATGATCCAGAACTATTAAGAGTTAAGAAGATTTTACAAACGCGAagta
gttcccgcgaaaattagtttcgtTAAAAGTATTATCTGTGAAAggtaaaa
acttaaaaaacccTAAATTGGGTCAACTTAAAGCTTCCAAAttttatact
ttaatgggatgaactttcgcggggattaaaatccgcgaaattaagtccca
atggaaatttggaagggtcTCATCCTCGAAAaaagtaaaagtcacaaaat
tgtgaaaatattgccacccaatagtgcctaacgcgaaattaagtccccgc
gaattttcgaatttcgcggataggctcaaccgcgaaatttaatccccgcg
aaagtttatcccattaaagtactcaattatttcttattttgtATAGATGA
TACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTC
CAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCG
AATATCCACTCACCTCAATAATAAGGTGATcaattacttttatttttatt
ttcaccaagGTTGCAACTTTTCTGTAGACAGAAATCTGTCCATAAAACTT
CTCATTAGAACTTCCTTTCCGATAACAAGCTTTGAATGTGGAACTTATGT
AAAactgaaatataattttttgcgTATCGTCCATATTCATCAAGGATGTT
TTACTTTCCTTCCTGATACGGTGAGAAAATATCCTCCTTTTTAGCCAACC
TTTCGCCACACTTCTAGAAGTGTGCAACAATTAGTTTTGAATCTCGAGAT
TACAAGTAATTTTAACAACTCTATTCCCAATTATCACCTCAAAAGCTCCC
TATTCATgaatgatatgcaccattgcaatgtcttccacggacccaacagc
tgattggttgtatgtgacatattgactgattttacgtcacttacaaccaa
tcagctgctgggtccgtgatgtaatatcagaagacattgcaatggtgtat
atcatgaattcagCAACTAAAGGCCGGCtcaaatgaatccaacattcaAT
TGGCCTATACTAGACGCCACGGCTTTTTTCTACGCTGTAACGTCTATTCC
aatttgcgactttttcgaatgttttgagcccaggttttcgggctctaaac
attcgattttttgacgtcattttaaacgtttgaagctcctgcagtatcAA
AAAAaccgaatttgcgtcaaaacacttgaaaggcttctatttttcgaaaa
tcgtcaaagtggaactcacagccaattcgattgacttccaaatttgccat
actcaccaactttgccaaatctacaattttaatgtcaaaagatcacagtt
tcatggcaaatttgtacatcgctacgccgccattatgatttccgttttgt
gatgcttagtcagcagttttctgtcggcgtttttaaccaatcaaattacc
gatcggcattgttttgctttagcattggaaggtcttctatttttcaaaat
ctttggcaaaagtggcaaaattggagtgaaaagaacacaggtctcgTGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
tgctttagcattggaaggtcttctatttttcaaaatctttggcaaaagtg
gcaaaattggagcgaaaagaacacaggtctcgtgggaacagtgttttgta
cGGAGACATAcggaggtaagttccaaaaatgccaagaatgccacattcac
cacatcttttttatttggcatttatggcactcaaattttgccacatttgc
caaatttttgtcaatcgaatgcaaaataattggcaatcagggcaaaaaag
gcatattttgaagtcaatcgaattggctgtaagaaacgggatgaaaaatc
ccggtttttggtgaggtactcGCTAACATTCAATCCAACATTTCAAATTT
ATTGTTGGACGAAATGTTGGACGAGAAGTCCCGTGGgaaaattcgaaaag
ttgcatgaaaagtcatttgctggatgaaaagtttgacggcgatcaaactt
catccaacatgatttccaacaattttcttaaaaagttgcaattttatgac
ttgcgcaaatgaacccaacatttgatccaacaataatgttggatcaaatg
ttggatcaaatgttggattcatttgccCCGGcctctcaatttttttaatt
ataatttttatatcaataaatatgaattattttcactttttcagcaCGGC
GAACGATTGCATGAGCTATACAACCGTCCAGACATTATCGGACGCTCTTT
ACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTATGCTGAATCAG
CGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGACAGCTGCGGCA
GACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGTTTTATGGGCTC
GTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACTTTGTAGACTTT
TTGATTGTAATTGGCTAACAATTATTTTACTGACTCTATTGGTTTTAATG
GTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCTAAAAGAAACTA
ACATTACTTCACTTCACCAAAATCGTATGCTTCAGGATTCtttagtttta
ccagaaaaccttAACCAATCAACGGTTTACAGAATCCATTTATCAAAGCT
ATTTGAGGAGGCTTTTATGGAATCAGTGATTGGATTTCGATGTAGAAAGA
AAAAGTACACTACAATAACAAATGAAGAGTTTCCTGAAAAGAACAGCTAA
ATGTGAGAGTGATTCGGAATAAACACATTTTGGAATGTGGTTAACGATAA
AAAGGGCTGCAGAATTATTATTGATCACGTGTTATGTTATGTTTACATGA
TGATGCGAGGAAGTTTTTTCAATCCTTGCAACACTTTGAAGGTCTATAGA
CATTGTGTGATGTcgtttcaattttgtttttattaagaATTGACTTTGTG
ACATTTCAATATCTAGAGGATCTTTTAATTAGAATTATAGAAATTGTTAG
tacaaaacaaaattataaatacaattttagtaaaaataaaatcgaTAGAA
TAATTCTTCtatttacaaataaattataaaagTGTGATGGtttattgttt
tgatgaatGATGCCATTCGAGTTGTAACTTATCTGCAATCCTATTGATCA
TGATAACTCGTAATCATTCCATAAGCTACAGGGAAAAGGAAGATAGTAAA
TGCTTCACAGAGGGCTTAAACTCACTACGTACACTGCATAACTATTTTTT
TACTGCTAAACTACTTCAATAGCGCTTCGTCGGGCAAACGTCatgattat
tacttctctcatttgaccgaaattcaatcccacaatccttttcgtcttaa
ttcaaaagtcgtgaaagttattactttttctttgtaattgagtgtaattt
gcgtgcaatcgtaataaacgcaaagggtgatgggattgaatttcagtcaa
acataaaaatcaatgtctatttttagattcgcgacGGTATG Coding sequence (CDS) from alignment at scaffold_217:127564..140004+ >TCONS_00052517 ID=TCONS_00052517|Name=TCONS_00052517|organism=Clytia hemisphaerica|type=CDS|length=4890bp|location=Sequence derived from alignment at scaffold_217:127564..140004+ (Clytia hemisphaerica) NNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAACAATGA CAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCGAGAACA ACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTGATGGGT ATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCGAAGTAA CACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAGTCGATG ATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTAGAACAC TCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACCGACGAG AGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACTCGCTGA TCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACACAGGGTT ACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGATGATACA AGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGTTCCAAC CTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTATCGAATA TCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCTATACAA CCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGAAAGGGT TAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACGACGTCG CGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGTGAAGCC ACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGATATCTAT GCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTAACAATT ATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCATGTAGA CTCGCCTCCGAAATCTAAAAGAAACTAANNATCGAAAAGTGGATTTACAT CCCAATCGCACCAGCTCCAGAACAATGACAGTGTTTTTAATGGCTCAGGA AATACCACACTCTTCAATATCGAGAACAACCGACACGCTTTGGAGCTCTG TCAGCAGATGTCAAACACTTTGATGGGTATACGACACAAGATTTGTAAAG CTATCGATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATATTTCCGT GAAATTTTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAGAGACGA GAACCGATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCGcaaatt ttttcaagCTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGTTTGAGT GATCAGGTGGAGAACATCAACTCGCTGATCCCAACACCACGTCTCTATGA CGACGAGAGTGTTCCGGAACACAGGGTTACCGAGAACGGCATCGAATTAA CGGACAGGGGAAGATACCAGATGATACAAGGGATGAGACGATTCGATGTA GTTTACGGCGGTGATCGAGAGTTCCAACCTTTGAGAAGCTTCGAATCACC ACACCTTGTTCGATTATTGTATCGAATATCCACTCACCTCAATAATAAGc aCGGCGAACGATTGCATGAGCTATACAACCGTCCAGACATTATCGGACGC TCTTTACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTATGCTGA ATCAGCGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGACAGCTG CGGCAGACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGTTTTATG GGCTCGTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACTTTGTAG ACTTTTTGATTGTAATTGGCTAACAATTATTTTACTGACTCTATTGGTTT TAATGGTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCTAAAAGA AACTAANNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCTCCAGAA CAATGACAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCAATATCG AGAACAACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAACACTTTG ATGGGTATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAAGAATCG AAGTAACACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGAACGAAG TCGATGATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGATTACTTA GAACACTCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGAACTACC GACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACATCAACT CGCTGATCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCGGAACAC AGGGTTACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATACCAGAT GATACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATCGAGAGT TCCAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTATTGTAT CGAATATCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCATGAGCT ATACAACCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTTCACAGA AAGGGTTAAAACAAGAACATTATGCTGAATCAGCGATCAAAATGCCTACG ACGTCGCGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAATCAAGT GAAGCCACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTCTTGGAT ATCTATGCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAATTGGCTA ACAATTATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTTATACCA TGTAGACTCGCCTCCGAAATCTAAAAGAAACTAANNATCGAAAAGTGGAT TTACATCCCAATCGCACCAGCTCCAGAACAATGACAGTGTTTTTAATGGC TCAGGAAATACCACACTCTTCAATATCGAGAACAACCGACACGCTTTGGA GCTCTGTCAGCAGATGTCAAACACTTTGATGGGTATACGACACAAGATTT GTAAAGCTATCGATAAAGAGAAGAATCGAAGTAACACGTGGCTTGGATAT TTCCGTGAAATTTTTATGATGAACGAAGTCGATGATTTCTCATGCAAGAG AGACGAGAACCGATTGATCGATTACTTAGAACACTCGTGCAAAGCTTTCG caaattttttcaagCTCCCAGAACTACCGACGAGAGGAGAATCAGAAAGT TTGAGTGATCAGGTGGAGAACATCAACTCGCTGATCCCAACACCACGTCT CTATGACGACGAGAGTGTTCCGGAACACAGGGTTACCGAGAACGGCATCG AATTAACGGACAGGGGAAGATACCAGATGATACAAGGGATGAGACGATTC GATGTAGTTTACGGCGGTGATCGAGAGTTCCAACCTTTGAGAAGCTTCGA ATCACCACACCTTGTTCGATTATTGTATCGAATATCCACTCACCTCAATA ATAAGcaCGGCGAACGATTGCATGAGCTATACAACCGTCCAGACATTATC GGACGCTCTTTACGTAAAATTTCACAGAAAGGGTTAAAACAAGAACATTA TGCTGAATCAGCGATCAAAATGCCTACGACGTCGCGCAGTCAAACAACGA CAGCTGCGGCAGACGTCGACAATCAAGTGAAGCCACGTATCACGTTGCGT TTTATGGGCTCGTTTTATTTTCTTGGATATCTATGCTGGGCGGTCGTACT TTGTAGACTTTTTGATTGTAATTGGCTAACAATTATTTTACTGACTCTAT TGGTTTTAATGGTGAGTGTTTTATACCATGTAGACTCGCCTCCGAAATCT AAAAGAAACTAANNATCGAAAAGTGGATTTACATCCCAATCGCACCAGCT CCAGAACAATGACAGTGTTTTTAATGGCTCAGGAAATACCACACTCTTCA ATATCGAGAACAACCGACACGCTTTGGAGCTCTGTCAGCAGATGTCAAAC ACTTTGATGGGTATACGACACAAGATTTGTAAAGCTATCGATAAAGAGAA GAATCGAAGTAACACGTGGCTTGGATATTTCCGTGAAATTTTTATGATGA ACGAAGTCGATGATTTCTCATGCAAGAGAGACGAGAACCGATTGATCGAT TACTTAGAACACTCGTGCAAAGCTTTCGcaaattttttcaagCTCCCAGA ACTACCGACGAGAGGAGAATCAGAAAGTTTGAGTGATCAGGTGGAGAACA TCAACTCGCTGATCCCAACACCACGTCTCTATGACGACGAGAGTGTTCCG GAACACAGGGTTACCGAGAACGGCATCGAATTAACGGACAGGGGAAGATA CCAGATGATACAAGGGATGAGACGATTCGATGTAGTTTACGGCGGTGATC GAGAGTTCCAACCTTTGAGAAGCTTCGAATCACCACACCTTGTTCGATTA TTGTATCGAATATCCACTCACCTCAATAATAAGcaCGGCGAACGATTGCA TGAGCTATACAACCGTCCAGACATTATCGGACGCTCTTTACGTAAAATTT CACAGAAAGGGTTAAAACAAGAACATTATGCTGAATCAGCGATCAAAATG CCTACGACGTCGCGCAGTCAAACAACGACAGCTGCGGCAGACGTCGACAA TCAAGTGAAGCCACGTATCACGTTGCGTTTTATGGGCTCGTTTTATTTTC TTGGATATCTATGCTGGGCGGTCGTACTTTGTAGACTTTTTGATTGTAAT TGGCTAACAATTATTTTACTGACTCTATTGGTTTTAATGGTGAGTGTTTT ATACCATGTAGACTCGCCTCCGAAATCTAAAAGAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052517-exon-scaffold_217-1491911889:127564..127671 | TCONS_00052517-exon-scaffold_217-1491911889:127564..127671 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1510915933:127564..127671 | TCONS_00052517-exon-scaffold_217-1510915933:127564..127671 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1575043694:127564..127671 | TCONS_00052517-exon-scaffold_217-1575043694:127564..127671 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1491911889:128094..128315 | TCONS_00052517-exon-scaffold_217-1491911889:128094..128315 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1510915933:128094..128315 | TCONS_00052517-exon-scaffold_217-1510915933:128094..128315 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1575043694:128094..128315 | TCONS_00052517-exon-scaffold_217-1575043694:128094..128315 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1491911889:129564..129725 | TCONS_00052517-exon-scaffold_217-1491911889:129564..129725 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1510915933:129564..129725 | TCONS_00052517-exon-scaffold_217-1510915933:129564..129725 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1575043694:129564..129725 | TCONS_00052517-exon-scaffold_217-1575043694:129564..129725 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1491911889:136860..136988 | TCONS_00052517-exon-scaffold_217-1491911889:136860..136988 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1510915933:136860..136988 | TCONS_00052517-exon-scaffold_217-1510915933:136860..136988 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1575043694:136860..136988 | TCONS_00052517-exon-scaffold_217-1575043694:136860..136988 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1491911889:138708..140004 | TCONS_00052517-exon-scaffold_217-1491911889:138708..140004 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1510915933:138708..140004 | TCONS_00052517-exon-scaffold_217-1510915933:138708..140004 | Clytia hemisphaerica | exon |
TCONS_00052517-exon-scaffold_217-1575043694:138708..140004 | TCONS_00052517-exon-scaffold_217-1575043694:138708..140004 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_217 | supercontig | scaffold_217:127564..140004 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR024129 | Sphingomy_SMPD4 |
Vocabulary: Molecular Function
Term | Definition |
GO:0050290 | sphingomyelin phosphodiesterase D activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0050290 |
sphingomyelin phosphodiesterase D activity |
Blast
BLAST of TCONS_00052517 vs. Swiss-Prot (Human)
Match: NSMA3 (Sphingomyelin phosphodiesterase 4 OS=Homo sapiens GN=SMPD4 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.152e-20 Identity = 82/281 (29.18%), Postives = 132/281 (46.98%), Query Frame = 1
Query: 76 TTLFNIENNRHALELCQQMSNTLMGIRHKICKAIDKEKNRSN------TWLGY----FREIFMMNEVDDFSCKRDENRLID-YLEHSCKAFANFFKLPELPTRGESESL-SDQVENINSLIPTPRLYDDESVPEHRVTENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRISTHLNNKHGERLHELYNRPDIIGRSLR-KISQKGLKQEHYAESAIKMPTTSRSQXXXXXXDVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLF 879
T +F E L L Q ++ +H K+I + S +WLG+ + N++D+ +D R D YLE + + F+L E R + +L + Q EN + +P+ V E+G+ LT GRYQ+I G+RRF++ Y GD E QP+RS+E LVR L+R+S+ +N++ ++ L +R D +G R +++ GL H + R Q + PR++LRF+GS+ L L A + LF
Sbjct: 543 TPMFGPEARTLVLRLAQLITQA----KHT-AKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMG--QDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDEN-----------GKKQLPDCIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHL------LSPVGRRQV------AGHTRGPRLSLRFLGSYRTLVSLLLAFFVASLF 793
The following BLAST results are available for this feature:
|