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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052515 ID=TCONS_00052515|Name=TCONS_00052515|organism=Clytia hemisphaerica|type=transcript|length=1705bpRun BLAST on NCBI protein sequence of TCONS_00052515-protein >TCONS_00052515-protein ID=TCONS_00052515-protein|Name=TCONS_00052515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp MSSSSSPNYQTPRGQSSATWSTPFSSFGTAPSSASIQHQSTMYRTSRGGSRun BLAST on NCBI transcript from alignment at scaffold_217:83424..125580+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052515 ID=TCONS_00052515|Name=TCONS_00052515|organism=Clytia hemisphaerica|type=transcript|length=42157bp|location=Sequence derived from alignment at scaffold_217:83424..125580+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_217:83424..125580+ >TCONS_00052515 ID=TCONS_00052515|Name=TCONS_00052515|organism=Clytia hemisphaerica|type=CDS|length=16530bp|location=Sequence derived from alignment at scaffold_217:83424..125580+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052515 vs. Swiss-Prot (Human)
Match: NSMA3 (Sphingomyelin phosphodiesterase 4 OS=Homo sapiens GN=SMPD4 PE=1 SV=2) HSP 1 Score: 188.348 bits (477), Expect = 4.367e-51 Identity = 148/498 (29.72%), Postives = 240/498 (48.19%), Query Frame = 1
Query: 349 ISSPQFQKQSYQTLFENALQKNSIRD----RCEEVTKVLQMVSVTELRELFPLLLHDLFGYQN--LPNWGFHYLEPRSYPVDYNAMKIFLGPKGILFKIIDKLMTDHDAIFQLPFEILPSGISEAIMKNQVP--LFYQHKMQNQLNGSIVINL--NPTEYYFALFSYFVLHQKTLQLKSDWTGVEDVLYVHLFESYLNEYLPLHQADNTNLQXXXXXXXXXXIKQHGXXXXXXXXXXXPDLHFAXXXXXXXXXXXXXYVDHLSGGGNQSTDTETVLQLVTDFWLAFNSEEFIQKEEE---------YKL-------------------------PSLDHSRMVRILIKYLHSYLNSCQ-KNAGVQGFS-DRSPSEELQKLVIPSIVYDKLYSYLLHCFNHWPLDSSFRMILETWLSFIQPWRYQTNQNNVSTDDFDGDIT-SWRTFIQTNSHFYSGLLSVFLLRALKYDLMAIQDVQLIYRVAKVLSQPALMEILHEG 1701
++ P Q+ S+ +L+ +SI +C+++ KV++ EL +FP L+ +FG + L W L+ R PV+Y+ + FL P G + K++ KL + D F P LP + +I + +P Y +K+Q G + +NL NP EYY F+ ++ QK L + S D Y L + YL+ +LP + L ++ +S + + + S LH + TS D S ++ +ET+LQ+ + WL S E QK + Y+L P+ +H +VR+L+K+LH++ NS + + A S SP EE ++ +P V KLY +L HCF HWPLD+SFR +LE WLS++QPWRY ++ +D ++ W F+Q N Y+ L FL RAL+ DL++ + +++RVAKV +QP L E++ +G
Sbjct: 1 MAFPHLQQPSF---LLASLKADSINKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYSIVMEFLDPGGPMMKLVYKLQAE-DYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTPTGGLGLNLALNPFEYYIFFFALSLITQKPLPV-SLHVRTSDCAYFILVDRYLSWFLPTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASY-----GLHHTSLLKRHISHQTSVNADPAS---HEIWRSETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSLQALHAYQESFTPTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFLQHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMYTKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKG 485 The following BLAST results are available for this feature:
BLAST of TCONS_00052515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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