TCONS_00052515-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052515-protein
Unique Name	TCONS_00052515-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	551

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052515-protein ID=TCONS_00052515-protein|Name=TCONS_00052515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp
MSSSSSPNYQTPRGQSSATWSTPFSSFGTAPSSASIQHQSTMYRTSRGGS
QSQSLLNPGDWTQKVDHLKKFFGDEYSPRKQFHTQSTPYGHLHNQRQQHI
SSPQFQKQSYQTLFENALQKNSIRDRCEEVTKVLQMVSVTELRELFPLLL
HDLFGYQNLPNWGFHYLEPRSYPVDYNAMKIFLGPKGILFKIIDKLMTDH
DAIFQLPFEILPSGISEAIMKNQVPLFYQHKMQNQLNGSIVINLNPTEYY
FALFSYFVLHQKTLQLKSDWTGVEDVLYVHLFESYLNEYLPLHQADNTNL
QTTTSLSSATSIKQHGSRSSMSSLWRSPDLHFATTTTNTKLSSTSSYVDH
LSGGGNQSTDTETVLQLVTDFWLAFNSEEFIQKEEEYKLPSLDHSRMVRI
LIKYLHSYLNSCQKNAGVQGFSDRSPSEELQKLVIPSIVYDKLYSYLLHC
FNHWPLDSSFRMILETWLSFIQPWRYQTNQNNVSTDDFDGDITSWRTFIQ
TNSHFYSGLLSVFLLRALKYDLMAIQDVQLIYRVAKVLSQPALMEILHEG
I

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033206	XLOC_033206	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052515	TCONS_00052515	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024129	Sphingomy_SMPD4

Vocabulary: **Molecular Function**
Term	Definition
GO:0050290	sphingomyelin phosphodiesterase D activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0050290	sphingomyelin phosphodiesterase D activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024129	Sphingomyelin phosphodiesterase 4	PFAM	PF14724	mit_SMPDase	coord: 120..383 e-value: 4.1E-24 score: 84.5 coord: 389..550 e-value: 2.5E-43 score: 148.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Blast

[Close]

BLAST of TCONS_00052515-protein vs. Swiss-Prot (Human)
Match: NSMA3 (Sphingomyelin phosphodiesterase 4 OS=Homo sapiens GN=SMPD4 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 4.252e-54
Identity = 148/498 (29.72%), Postives = 241/498 (48.39%), Query Frame = 0

Query:  100 ISSPQFQKQSYQTLFENALQKNSIRD----RCEEVTKVLQMVSVTELRELFPLLLHDLFGYQN--LPNWGFHYLEPRSYPVDYNAMKIFLGPKGILFKIIDKLMTDHDAIFQLPFEILPSGISEAIMKNQVP--LFYQHKMQNQLNGSIVINL--NPTEYYFALFSYFVLHQKTLQLKSDWTGVEDVLYVHLFESYLNEYLPLHQADNTNLQTTTSLSSATSIKQHGSRSSMSSLWRSPDLHFATTTTNTKLSSTSSYVDHLSGGGNQSTDTETVLQLVTDFWLAFNSEEFIQKEEE---------YKL-------------------------PSLDHSRMVRILIKYLHSYLNSCQ-KNAGVQGFSDR-SPSEELQKLVIPSIVYDKLYSYLLHCFNHWPLDSSFRMILETWLSFIQPWRYQTNQNNVSTDDFDGDIT-SWRTFIQTNSHFYSGLLSVFLLRALKYDLMAIQDVQLIYRVAKVLSQPALMEILHEG 550
            ++ P  Q+ S+      +L+ +SI      +C+++ KV++     EL  +FP L+  +FG  +  L  W    L+ R  PV+Y+ +  FL P G + K++ KL  + D  F  P   LP  +  +I +  +P    Y +K+Q    G + +NL  NP EYY   F+  ++ QK L + S      D  Y  L + YL+ +LP   +    L ++   +S +         + +  + S  LH  +         TS   D  S   ++   +ET+LQ+  + WL   S E  QK +          Y+L                         P+ +H  +VR+L+K+LH++ NS + + A     S   SP EE ++  +P  V  KLY +L HCF HWPLD+SFR +LE WLS++QPWRY  ++    +D     ++  W  F+Q N   Y+ L   FL RAL+ DL++ +   +++RVAKV +QP L E++ +G
Sbjct:    1 MAFPHLQQPSF---LLASLKADSINKPFAQQCQDLVKVIEDFPAKELHTIFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYSIVMEFLDPGGPMMKLVYKLQAE-DYKFDFPVSYLPGPVKASIQECILPDSPLYHNKVQFTPTGGLGLNLALNPFEYYIFFFALSLITQKPLPV-SLHVRTSDCAYFILVDRYLSWFLPTEGSVPPPLSSSPGGTSPSP-----PPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPAS---HEIWRSETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSLQALHAYQESFTPTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAAVPRFVQQKLYLFLQHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCVSEKWAPFVQENLLMYTKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQKG 485

The following BLAST results are available for this feature:

BLAST of TCONS_00052515-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052515-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NSMA3	4.252e-54	29.72	Sphingomyelin phosphodiesterase 4 OS=Homo sapiens ...	[more]

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TCONS_00052515-protein (polypeptide) - C. hemisphaerica