TCONS_00052514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052514
Unique NameTCONS_00052514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052514 ID=TCONS_00052514|Name=TCONS_00052514|organism=Clytia hemisphaerica|type=transcript|length=1749bp
CTCTACCTCACAGTCTACGATTATTTAGAGTTCTGTTAGAAGATTTTCAA
GAATTGCCACTTTGGTGTGGAAGCAAGAAAAACATGTTCGATTTTACGGC
CAAGGATCCGGCGAACTTAAGTAAATTTGTGATGTATATGGATCATGAGT
TCGACAACTATTTATACCTGAGTGAACGtgacattttgaccatcgatAAT
GTTACTTCTAAATTCCGAAGTGAGTTTGCTCGTAGTAAATATCCCATAAT
ACCGGATGTAGACTTTACTCAAGAATGTGGTATGCAGGAAAATTTAAATT
CATCTCAAAGTGGGTACGATGTCATTCTCATAAGCCATCAAGATCATATA
ACGATTGTCCAATCATTAAAAGAAAGGTTACTTTGTAAAGCGCCGTCTCT
CAAAATATTGCTGGTAACTAACAAGGACGAAAAGACGATTCGTTTAAATG
TGTTTGATGAAACTCGCCTGGTTATGTCGTTTCTTGGCAAGTCCTTCTTT
GAGGATGTTTTCCTCATGGAGCAATTCAATACTGCTTTGTACAGACATCG
ATTCAAAGAATATATCATTGCCTGCCCTGTGATTCTCGGTGAATTGCCTG
CAATGCCGGTATATCCGAAACTATCATTCTGCTTGTTTTCACTAACCGAT
AAACAATGGCATAATAAAGATGGTAAAGTTTCTGTTGAGCGCTTTGTTGA
TAATGTAGCGTCTGTGGTTAGtaatattctatttttaaaaccCACCACAG
CTACATCctttaaaacattatttaatATATTGGAGCTTCGAGAATGGGGC
GATGAGACTTATGGTGATAGAAAGAAACTCAAACCGCTAGCTTTTGATGG
TGCAATGGTTGTATCCGCAAATGACCGTTCAATTATTTCTGTAAGAGATT
CAATGTTGATGGTTAGTGGTAGTCACGCTCTATCATCGCCAGAACCTATA
TTAGAAATCACATCATCTGGGTTAGAATATTCAATACCTGAGCCAAAAGA
ACCAGAAGAGAAATCACCAAATTTGCAACAACAAGCCGAAAAAACAGAAA
CAACCTCAACAGATTATGTTGAACAGAAGCCTTCAGACTCACCAAGATCT
CTCTTGCTAATAAAGAAGGAAACAACATTTAAGAATGGCCAAGCTCCGCC
GAGAAGTGAGGTGGCAACAATCTCAACAGAATACGATAGACAAAAGGTTT
TAGATTCCAATGAATCTTGTTCATTGCCGATAACGAAAACACCGCCACCG
AAAAGGGAGGCTGAAGAACCAGAGTTATTAGAACAGGCACCACCAACAGA
TGTTAACTCTGGTGAGATTCCTTCATCAGAACTAAATCAAACAAATGAAG
CAGATCCTCCGAATAATAAGGCGAATGATAGTCGACTGAAACTCAAACGA
CAGAACAGCAAAACGTGTTGTATTCACTGAGGATTATTACTTCATTTCTA
CTGTAATATAGGTCACTGTTTTAATACTGTGTAGTTTCGCTCTGACATGG
CTCTGACATAATTTGCAAACTATTGAAATTGCTTTGTTTTAGTAAtactt
aaggcttggggacacgagaagttttttttcgcgttggtgcaatgcaacat
gccccatcccaccaacctgaaacgctttttCGTGGCTCCaacccattttt
cttttaataacatttgtgcttcCCTCATGACAAAATCAGcttgtcttttg
ggtatttccctcattTCTTGTCTcattaaacaaaaaaagaaaccatggg
Run BLAST on NCBI

transcript from alignment at scaffold_217:66888..72938+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052514 ID=TCONS_00052514|Name=TCONS_00052514|organism=Clytia hemisphaerica|type=transcript|length=6051bp|location=Sequence derived from alignment at scaffold_217:66888..72938+ (Clytia hemisphaerica)
CTCTACCTCACAGTCTACGATTATTTAGAGTTCTGTTAGAAGATTTTCAA
GAATTGCCACTTTGGTGTGGAAGCAAGAAAAACATGTTCGATTTTACGGC
CAAGGATCCGGCGAACTTAAGTAAATTTGTGATGTATATGGATCATGAGT
TCGACAACTGTAAGTATCTTACATGCCCAGGGGAGGTCGCTTGGGTACGG
GGACGCGCCGCGGGCCAGAGTCCCTTTTTTTAAGCTCTGAAgatttctga
cagggtccctgatttaataattttgaaaatgtttatccGCCACGGTTGAC
TTTTGGAATTGGTGTTTTTAGACAATGTTTAGGGTGGGAGTTAGGGAACA
ATTCTAGTCGAGAAGTTGCTAGTTGCTACTTTCGAGTTGGGAAGTTGCTA
GTTTCAGTTgggaagttgaaaaattaccggctaccgaaaaagaataaaca
tacatcaaaagtacgactctgaaagtaaatgtaatatgaagagtaatata
taacacataATAATACGTAttattaaagtctgttcacgataagtgtgcac
tctttttggacctaccccggtggaggtcctataaattaacctttgtccgt
tcgtctgttcgtctgttcgtccgttcgttattagctttcctcatgattgg
ctcgttaattttttctgatcttttgcatgaaagtagggtaccatcgtagg
taaaagatggcttaagcagatttttgcaaaaaaattttgttggctcaaaa
aacgcatgtttatctatNggagcccgattttcgaagaaaaaaatttgggg
gggacaaatttgggccaaaaaacggctaaaaattgggttttttggacttt
gtgaaaaattggatcattaattttttcttatttttttacgggaaagtagg
gtaccatcataggtaaaagatggttcaagcagattttttcaaaaatattt
tgttggctcaaaaaacgcatgtttatctataagaatcactattgataagc
atacatcaatgttcttagtcaaattactcaattttttttatgagatagat
gttttttttgctcatgagggcttacttataaagaatatgtgtgtttagac
atgaaattttggttgcttggcttgtttttatagaaaaaggctcttttatt
ctttatgattttttgcacaaagatgcataactataaaccctcgaatgtga
cggagctcgatttttggaaaaaaaactttggggtaaatttcagccaaaaa
cggctaaaaaaagggttttttggacttgtttttttctgactttttgcgtg
aaagtaggtaaaagatggctcaagcagatttttgtaaaaaaataattttt
cagctcaaaaaacgcatatttatctataagaatcactattaataNNNNNN
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NNNNNNNNNNNNNNctttttttataagaaacaaacgactaattttaatag
atcgttactatttgtgttctgaatgattgtttaatggtcacgcttatgta
gatatcaattatatatgtgttaaatgcataaccaggtaggtccataaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgaaggaattcttca
atctttataaatttggtatcgttggagagatatttgtgagtggaacaatt
tgaaataaaaaagtctttaaaaatattctaaaaacgaagatgaaaattaa
gaagaaaaaaaatgaagatcttgtagaaaagtgctataactttcattttc
actggagagattctttgatcttaggaggttatcactgtgaagaaatttca
ctaaaatatttattcaatataaagttatgatttaatttaatttaatttaa
ttttaatttacagtaatatatttctcaggtctatcgacctctatgaaata
atcatgcttaacattttacaattttacagttgTAGGCGCACGGTGGGCCT
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTTTATTTCAGATTTATACCTGAGTGAACGtgacattttgaccatcgatA
ATGTTACTTCTAAATTCCGAAGTGAGTTTGCTCGTAGTAAATATCCCATA
ATACCGGATGTAGACTTTACTCAAGAATGTGGTATGCAGGAAAATTTAAA
TTCATCTCAAAGTGGGTACGATGTCATTCTCATAAGCCATCAAGATCATA
TAACGATTGTCCAATCATTAAAAGAAAGGTTACTTTGTAAAGCGCCGTCT
CTCAAAATATTGCTGGTAACTAACAAGGACGAAAAGACGATTCGTTTAAA
TGTGTTTGATGAAACTCGCCTGGTTATGTCGTTTCTTGGCAAGTCCTTCT
TTGAGGATGTTTTCCTCATGGAGCAATTCAATACTGCTTTGTACAGACAT
CGATTCAAAGAATATATCATTGCCTGCCCTGTGATTCTCGGTGAATTGCC
TGCAATGCCGGTATATCCGAAACTATCATTCTGCTTGTTTTCACTAACCG
ATAAACAATGGCATAATAAAGATGGTAAAGTTTCTGTTGAGCGCTTTGTT
GATAATGTAGCGTCTGTGGTTAGtaatattctatttttaaaaccCACCAC
AGCTACATCctttaaaacattatttaatATATTGGAGCTTCGAGAATGGG
GCGATGAGACTTATGGTGATAGAAAGAAACTCAAACCGCTAGCTTTTGAT
GGTGCAATGGTTGTATCCGCAAATGACCGTTCAATTATTTCTGTAAGAGA
TTCAATGTTGATGGTTAGTGGTAGTCACGCTCTATCATCGCCAGAACCTA
TATTAGAAATCACATCATCTGGGTTAGAATATTCAATACCTGAGCCAAAA
GAACCAGAAGAGAAATCACCAAATTTGCAACAACAAGCCGAAAAAACAGA
AACAACCTCAACAGATTATGTTGAACAGAAGCCTTCAGACTCACCAAGAT
CTCTCTTGCTAATAAAGAAGGAAACAACATTTAAGAATGGCCAAGCTCCG
CCGAGAAGTGAGGTGGCAACAATCTCAACAGAATACGATAGACAAAAGGT
TTTAGATTCCAATGAATCTTGTTCATTGCCGATAACGAAAACACCGCCAC
CGAAAAGGGAGGCTGAAGAACCAGAGTTATTAGAACAGGCACCACCAACA
GATGTTAACTCTGGTGAGATTCCTTCATCAGAACTAAATCAAACAAATGA
AGCAGATCCTCCGAATAATAAGGCGAATGATAGTCGACTGAAACTCAAAC
GACAGAACAGCAAAACGTGTTGTATTCACTGAGGATTATTACTTCATTTC
TACTGTAATATAGGTCACTGTTTTAATACTGTGTAGTTTCGCTCTGACAT
GGCTCTGACATAATTTGCAAACTATTGAAATTGCTTTGTTTTAGTAAtac
ttaaggcttggggacacgagaagttttttttcgcgttggtgcaatgcaac
atgccccatcccaccaacctgaaacgctttttCGTGGCTCCaacccattt
ttcttttaataacatttgtgcttcCCTCATGACAAAATCAGcttgtcttt
tgggtatttccctcattTCTTGTCTcattaaacaaaaaaagaaaccatgg
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033205XLOC_033205Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052514-exon-scaffold_217-1491911889:66888..67046TCONS_00052514-exon-scaffold_217-1491911889:66888..67046Clytia hemisphaericaexon
TCONS_00052514-exon-scaffold_217-1510915933:66888..67046TCONS_00052514-exon-scaffold_217-1510915933:66888..67046Clytia hemisphaericaexon
TCONS_00052514-exon-scaffold_217-1575043694:66888..67046TCONS_00052514-exon-scaffold_217-1575043694:66888..67046Clytia hemisphaericaexon
TCONS_00052514-exon-scaffold_217-1491911889:71349..72938TCONS_00052514-exon-scaffold_217-1491911889:71349..72938Clytia hemisphaericaexon
TCONS_00052514-exon-scaffold_217-1510915933:71349..72938TCONS_00052514-exon-scaffold_217-1510915933:71349..72938Clytia hemisphaericaexon
TCONS_00052514-exon-scaffold_217-1575043694:71349..72938TCONS_00052514-exon-scaffold_217-1575043694:71349..72938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:66888..72938 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.431586	0.145488	0.819664	0.682483	0	0	0	0	0.763418	0.493232	0.640378	0.409478	0.400477	0.430595	0.468804	0.114492	0	0.711836	0.867179	0.542542	1.70939	0.902117	1.05456	0.464477	1.18655	0	0.676082	0.376442	0.603449	0.734068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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