TCONS_00052443 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052443
Unique Name	TCONS_00052443
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1560

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_214:35055..44720+

transcript sequence

>TCONS_00052443 ID=TCONS_00052443|Name=TCONS_00052443|organism=Clytia hemisphaerica|type=transcript|length=1560bp
AGGAAACGCCTTGCTAACAAAAGACGAATCTAACAAGGCCATAATCCAGG
AAACCCAATCAAATGGAGATGGCGAAAATAGACCAGGTCGCTCTCAGTCA
ACAACAAAAGTGGAATTTCAGCGAAAAGAAGATCGAGAAGCAAGCGAATC
ATTTGACCCAACGAAGCTACGCGACCCTGAAAACGTTTTTAAGTCGCAGC
CACAGACgagtgaaaatgaagaagtcGTGAAAGAACTGTCCACTACATAC
ACCTATATGAAAGGGAAATGTGGACATTCTTTCGAAAGCTTTTTAAAACC
ACGAATCTTTTATTTCACCAAAGCTTTCACACCTTTATTTACTTGGTTCC
TTCCGATACTAGCTGCAACCCTCCAGTTCTGTTTGAATGAGAGAAAGGAG
GACGAAGTTGTGGTATTGTGCGAAGATATCTGTCAAGTAAAAATGGTTCA
GTATGCCCTGGAAAGGATACACAAGCATCCAATTGCATACGCACCTTACC
TTACCGGAGAATATCCTCACGACATCCACAAGATGAaggaaaaattcgtc
aaaaatttgGACGAGATGGAGACAGTTCTGATATCCGATTATCGGTCTGT
TCGTGGATTGGAAATGGCTCATACAATCATCTTTGTGGATCCAGAAAACG
AGGCCAAAGCACATTTTCTCGTCGAAGCAATCACACGAACCATAACAAAT
CTTGATGTCATTTCAAcgaaacctttttcaaaaaatgcttcCACGAGTAT
CgaaagagcttttcaaaaatatgtcgATGGGACTTTAGCAATCAAGACAC
ACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAAAGTACAATTCCAA
TACAAAGAAAAGGACggctcaaaacaaacaaaaattatttcacagaAATT
GACCGATTTCAGTTTCGACGTTTCACAATCTCTAgatgattttaacaaaa
atgaagAGCTATGGCAAAACCATTTCAGGATGGCGTTTACTCTTTCAACT
TCCATTTCATCTTTGGGAACCAACAAATGGGATGGCAAAACCATGAGAAG
TGTGACCTTGAATGATGGAACTACGCTCAGTTTTCATGatgttcggaaaa
ttttgaaggaaaagaaattcgcgaaattcgaagaaattttCCAACAAAAT
CCGAACATCATCAACTCGTTGCGTAGTGGTTATGATGATCGGACACTTCT
CATGGAGGCTGTTAATGTAGATCGTTTCGACGTTTTCGTTCACTTGATGA
ATTATCCTCAAGATTTTTCACTCGTGAACAATGTTGGTTGGAACGTTCTT
CATCTTGTTGGTCGTTATGGAAAAGTTCGTTATTCGGAAAAGTTTGATCA
ACAAACAATCGAAAAGTTGATCAATGGAAGAGACGATCGCAACTTCACAC
CATTGCATTGGGCAGCACGTTGGAACaaacatgacgtcatcagatggtTG
TTGGCCAAAGGAGCGGATCATGAATTGAAAAATGATGCTGGTCGACGCCC
TGATGAACATTATCGATGTGATGGTGTTACCAAAGAAATCATTCGATCGT
TTCGTTCGTC

Run BLAST on NCBI

transcript from alignment at scaffold_214:35055..44720+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052443 ID=TCONS_00052443|Name=TCONS_00052443|organism=Clytia hemisphaerica|type=transcript|length=9666bp|location=Sequence derived from alignment at scaffold_214:35055..44720+ (Clytia hemisphaerica)
AGGAAACGCCTTGCTAACAAAAGACGAATCTAACAAGGCCATAATCCAGG
AAACCCAATCAAATGGAGATGGCGAAAATAGACCAGGTCGCTCTCAGTCA
ACAACAAAAGTGGAATTTCAGGTTAATGAGGTAATTTTGTTAACGAGTGC
ACTGTGTAAATAGCTTACCATTGAAATTGAATAACGAAGCTAGTTTTTCT
TTGTCAGAACCGatcatctttttagaaattctTTCTACAGATTCTGTTTT
TCCAGACTAGAACTGgttaactttttgtgttgggtATTACaacttatttt
tgaaattccgtTCAAATGATCTGATTCGGATGTAATTTTAACTTGTGAAA
TAAACGTGCTCTCCTTGGCAACATACCCCCCTCTTACAGACCCGCTAGCA
GGATCTTTCAGGCAGTTGGGGTTATAAAGGACCAGAATTCAATTGGGAAG
ATTGATATATCCATGTTTTTGAGCCAGAAAACTCAATAGGGatagaaaaa
atagcacaatattttctagagtataattttccactggggactatattttc
atcaattatttttcaatatgaAGGGGTCCTACTTGGTCTGTGAGAAGTGA
CTGATtgccattgatttcaaagccttGAAGAGGCGAATTCTCAAACTCCT
GGTTGGGAAATtaagccacttattttccattCAGAACACATGCCCGTGTG
TTTTTaaaactaaatttaaaaatgcacggcaaacttaaggcttcactttt
tcttgcttaaaaaaggTAGAAGATTCTTCTCTAGCACCTTCGTACGATGG
CTCAGAAGGCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATGAGTTGATGTTAATAGCGAAATCATTTGTGGTTT
GACGAGTTGTAAATCTGGTCTGTGATTTATATATAACAACATTTTTTTGG
CGCGTGAATGCTCACCAGAAGCAATTTGAAGGAATAAAAAATCCATGGAA
TTTTTGGTTTTGTAGCAAacaaaatcttgaatttcattTACTTTTTAAAC
ATCTAGCACTGAAGATGGTTTtaccgaaaagcttttgctgaaaataaaga
taaaacttgttctttttctttatttctttatgGAATGGCTGATTTAAACA
TAAATCTAAAGAAATACCAGGAAGTAAAGGGTACAGGACCTCTTAGATTT
TGGTGCTTTCTTTGCTTTGTTTCATTGAGTATACAATTGGTACTACTTTG
AGGGAGGGGGTGGGTGGGAAAGGTGGATgcaaaaaacaaagttgatattt
ggtCACTTTTTGCTTCCCCGATTTAAGCCCGAAAATTCCCCGATTTTTGC
CACTCGGGGAAAACTTTGCCGACCAGCACTTAACTCGgaaattttgattc
attttgcccaactcgacattcattttaaagaccaaaaaaaatttcgtttC
GCTGGCCGCTCGCTTGTAAATTACCCGCCGTGGCAACAAgttagaagtgc
gcagtgtcgagccttctgggccattgaccctagacagttctagttcacta
attttataagaactggaagtgcgtggtgagccttaggggTCATCGTACCT
TTGGGGCTTCAACCTGAGTTCCACCACTTTACCAACTACAGAAGAAAAGC
AAGCAGtggttttttaaattcttttttatttagtttttggacctaccccg
ggggggtggaggtcctataaattaacctttgccCGTTCatccgttcgtta
ccaacttttcttagggttgaatcataggaatcttttgatttttagtacaa
aggtgcaaaatggtggtggccaaaatgtgactgagctcgattttcgaaaa
aagatatttttgagtcaaaaaacggctaaaaacgggtttttttgacTATG
Tctatgtgaaaaattggatcattaattttttctgattttttgcatgaaag
taggtaaaaaatggctcaagcagatttttgcaaaaaaaaattggctggcT
CAAAAAACGNATTTCGTTTTGGGAAAAATATTGGAAACTACTAATTTCTA
TATGATTTCATCTCCAGGAAACCATGgtgaaattttcacatttttcccAG
TGTTCATGTTCAgattcatgttgtttcttccgattctgagcgggcTGCCG
CGGTTAAAAATGTTCGCGCGCACCTAATACACTCATttcgttttataagc
ataacgtttataagcatactgaagctcaaatttccagaaaaattaagcat
atgctatgcataccttgaggctcagccGNGTAGAgtgcgatggtttgagt
tttctggaaacctgtgcatttttctgatagtggattgtttttataaagaa
aagcgtttaataacttttttacttatttctcaaaaatctatttcaatagt
gttgatagtttctcccaatagatatgctttcatttttctttatttttctg
taTTTTGACTAGTTAtttcttatgtgtttcattgtttaaatgttcattga
ttagttggataaccaggtaggtccataatagtattacttgtttttttttc
caattaaagggataatccaatactacgcaaatcaaaatattatggtcacG
TGTCTGGAATTTGNGattaaagggataatccaatactacgcaaatcaaaa
tattatggtcacgtgtctggaatttgattggtcgagcgcggtaaaagttt
acaatttgattggtcgaacgggattttcactttcgttttcgtaatctaaa
caaaccgaaaaatactttgtgacataaaaaagttcgaagttgggagggga
atgaaaaatctttcgtgtAATTTCTTCTGTCTTGTATCATACTTTTATAT
AtgaaggaaattttctgttttgctatgccaaaattgattcacaAATGTAA
ATACTACACAAGAGTTTTCTATACACAAAGAGATTGTNCTTATTTCCCAA
TCAAAACACGTAACCCGTgtgtttttcaaataaaatttaaaagtgcacgg
caaacttaaggcttcactttttcttgctttaaaaGGTAGAAGATTCTTCG
GATCCGATGCTTCTCTAGCGCCTTCGTACGATGACCCAGAAGGCTCCAAA
CACGCACTTCTAGTTTTCACatacttccagttcttataaaatttgtgtaC
TAGAACTTTCTTAggtcaatggcccagaaggctcaagtgacactgcgcac
ttctgactTGTTATAACAGCGTGAAATTTCCAAGCAAGCGGCCCGCgcaa
tgaaattttgttttttttggtctttaaaatgaatgtcgaATTACGCAAAG
TAAATCAAAATTTCCGAGTTGTTCATATCAAGAGTTACAGGTTAAAATTT
CCGATTTAAGTGCTGGTCAGCAAAATTTTCACCCAGTGGTAAAAATCTCG
AAATTTTCGGGCTTAAATCGGGGAAGCAAAAAGtgatagaatatcaactt
tgttttttgcATCCACCTTTTCCACCCCTTCCCTCAAAGTGGAACTAATA
GAAATGAAACCAATAGTtaggcaaagaaaaataaagcacCAAAATCTAAG
AGGTTCCGTACCATTTACTTCCTGGTATTTCTTCAGATTTGTTTGCTACA
AAACCAAAAATTCCAtagattttttaattcttcAAATTGCTTCTGGTGAG
CATTTACGCGTCAAAATAATGTTGTTATATATAAATCACAGACCAGATTT
ACAACTCGTCAAACCACAAATGATTTCGTTATTATCATCAGCTCATTTAT
TACAACTCATTATttattttgctgaccagaacgGCTCTCTTTAGAGGGGG
AATTTGcgtatctaaaatatttttagaagtgtgcagtgtcgtcacaaaaa
aactcggaagtgcgcagtgtctcgTGAGCCTCctgggccatgaccctaga
cagttctttttcacaaattttataagaactggaagtgcgtggtgagcctt
aggggccatcgAGGCTTCAAACTGAGTTTCACCACTTTACCAACTACAGA
AGAAAAACAAGCCGTGACTTTTCTTAATTCAATTTCTACAATTAAACCTT
ACCTTTATGTTTTaacgagaaatttcaaattacttCCCTTTTATTAGCGA
AAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGA
CCCTGAAAACGTTTTTAAGTCGCAGCCACAGACgagtgaaaatgaagaag
tcGTGAAAGAACTGTCCACTACATACACCTATATGAAAGGGAAATGTGGA
CATTCTTTCGAAAGCTTTTTAAAACCACGAATCTTTTATTTCACCAAAGC
TTTCACACCTTTATTTACTTGGTTCCTTCCGATACTAGCTGCAACCCTCC
AGTTCTGTTTGAATGAGAGAAAGGAGGACGAAGTTGTGGTATTGTGCGAA
GATATCTGTCAAGTAAAAATGGTTCAGTATGCCCTGGAAAGGATACACAA
GCATCCAATTGCATACGCACCTTACCTTACCGGAGAATATCCTCACGACA
TCCACAAGATGAaggaaaaattcgtcaaaaatttgGACGAGATGGAGACA
GTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGGAAATGGCTCATAC
AATCATCTTTGTGGATCCAGAAAACGAGGCCAAAGCACATTTTCTCGTCG
AAGCAATCACACGAACCATAACAAATCTTGATGTCATTTCAAcgaaacct
ttttcaaaaaatgcttcCACGAGTATCgaaagagcttttcaaaaatatgt
cgATGGGACTTTAGCAATCAAGACACACGTTGAATCGAGCAAAGACGCAG
AAGATCTTCTGAAAGTACAATTCCAATACAAAGAAAAGGACggctcaaaa
caaacaaaaattatttcacagaAATTGACCGATTTCAGTTTCGACGTTTC
ACAATCTCTAgatgattttaacaaaaatgaagAGCTATGGCAAAACCATT
TCAGGTATAatttttctgttgaaattttcgattttcaataATCTTTATTA
TTGCAAAAAGCTCAATGAGAGGATATAAgtcatattttccaaaattaggt
GCCCGCTAATCCTTTAACCAAATATATTCCAGACTAAAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGGC
GTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACGTAAGTCAATACAG
TTGATGCCCTCTGATTCGGCATTCtgttattcgataagctcccattATCA
ATCAACTAACAGTCATTTGACaaatttcctttaaatttcACATAAAAGAT
ACTTTTTTATCGGACATTCTATCGCTATCATCTCCCTGGGGTTGGGGTAT
TTTAAGATTCATGAtttaacgatttacgatgcacgattcacGATCCATGT
TCCATGCATAAATTATGCTGATTTATGCGTAATCATGCTAACCATGATAT
TTTGGCAATTTACAAAGTTTCATTCGCAGAAACCAACGacaaactcaatt
atttttaaaagcaTGATTCATGTTAGATTATGCAAATTATATTCAACGAA
GCTTTCATCGCATCGcattacttcgtacattacggtccgcaaaccatggT
GCCGAATATTGTTCATCagtatattgtgtagtctaagtaaaAGCCTTGAT
TAGTTGTAGCTTTATCGCTTACTTATTAGTTTTTTACATAAATTTGCCGT
CGTAAACAAAAACGAGAAAAGATTACGCCATTGTTTTGGAAATGTGttac
ataatttaagttttatgtaaatactttatgcatggatcgcgaatcgtgca
tcgtaaatcgttagatcgtccATCTTAAATTGCACCAACCCGTCTCCCTG
GGAAAGTTTAGATTTCTAGCATATGAAAGGGTTTTTGAGTAATAGAGTAT
GAACTTTAGACCATCCTATCCTCAACACAATGTCACAACAAAAGGAATAT
CTTATCGTCTAATGTtaggcttacgccaattagggccgttaataacgcca
aaatttataaaaatggctacttatgcctcaaattaataaataatgactaa
aatttacattaaaatgtcattttcagtagtaaactgttgaaaattccatc
gaaaattactgatttttaaatatattaaatatttcactgaagttttaaat
atggagtaaaacaatcgATAATTTTCATCTTCGAATCacacctaaaatcc
tttaaattgagaaataatgataaaaaattaacgccgcttttaggttaaaa
ttgcaaaatcttggcccttttacaccggcccttttaACACCGGTCGCCAT
TACGCCACGagaccaaaaataacgccaataagggccggtgtaaaaagggc
cgatagcGCAATTCGGAAGGcagataaatttgaaaacggagTTTAGTTCG
GGGGGGGTTCGACATTCTTGAAAGATTCCCTATAAAGACCGAATATTCTG
TTTCCTCGATTTTGCAATACTATATAAACTTCAAGTGTAGAAAAAGCTAC
TCTCGTTAGCAATGGAATGTAGTATTTCAATCtccataatttttgttttt
gcctttctgaaaggtaaagctTCTATGGATGATATCTATTAATAATTTCT
CCTGCATATAGCAACAAATGGGATGGCAAAACCATGAGAAGTGTGACCTT
GAATGATGGAACTACGCTCAGTTTTCATGGTAAGTTTGAttcgaaatttt
gttttgatatacgGCAAATTTTATAAATTCTCGACTATACAATCAAAAGC
TCACGAGTACCCAAAAcgaattttctattttggtgttctATATTCTCTGG
AAAGAAACCTTGGAACATATGATAATTGAAGGCCAATCTATATCATAGGA
TTTGTATATCTGTTACATAATATTTTCTATCCatgatttggtttgatttt
atttgatcattcatttgattcaattttcaaatcataTCAAATCATCTCAT
TTCTTTGACAGTAGTGAACAAACAGACGATTAGACACTGCTAGACAACAA
AGGGCTAGGATTACGAGATTTAGTGTAGCGGATGTGTAGTGTAGAACgag
ttttgaaaaactttgggAACACCCGAATACAGTAAACTCTCtttatttcg
aacccctactattcgaatctttctgtaattcgaactaagatATTCGTCCC
CTCAGCTGAAAAACATGTAATACactttgtaattcgaatctttctctaat
tcgaagaaaatttctgCCCCTTTCAAGATCGAGTTAGAGAGACTTAACAG
TAGCGACAGTCTTTTCTTCATTCAAACATCAGAATACTGACCCAAAAATG
GACTAACActgtcatttttaattttgaaacccttaggctcagatttgcag
agtTCCTACGCAAAACATAAGCAAcctggaatatttttcaagttgtcatt
tttgatttacagtgggaaattcgaatttagcgctcatttctcacttacta
aaataaaaaccaaatttcggaagttgcgttttttattaagaaagtgtgac
cagtgaaagaataacagaatttgattggctatgtttttaACCGTCTTTAA
AATCTTGGAAATTCAAACTCGCAGCCCAAACTATACTATACATTTcacca
tcagtatataaaataagaaatcatagcatcgATCTCCAGGCTACAAAAAT
AAATGTCACTGGACTTGTCCcacaaaatttgaacaaaaataaatgAACAA
AATTAGAGGGGGTTCTATTTTCGGTATTCTCAGAGACTGATGACGTCACC
CCCCTCCCTCCAAGATGCTCAAGTAAGGTTTAACGTTTTAGAAAcaattt
gagaatattttaagactagaaattgaaaatttaccaTTTTACTTTTATTA
AGATATTTTAATGGCCTCACTTGAAAGGGTTTTTCATTTATTACGAAATG
GGAGGGACACAAAGACAATCAACTGAAATCATAATAAAAGAAATGTCAAT
TTCATCCTCAAGGGAACgacttattttttttcttctcctgCTAAAATGAA
AGTTTCTTGCGTTTGtttcatttgctttttatatgTGATGTGTGATGGTG
GTGGGGTAAATGGTTTTTGTGGAAAAGTGAATGaattaatgaatgaatga
ataaatttgAACGGAGAAATTTCTAGTTCCTTTAACCTTTCATTTTCTGA
ACCTCTAAGTGTTGTAcaattaaatttagtgaaagTACCTgtgtaaaatt
aaatttattcaagctaagattttctaaaataaaactAGTTCAGCTTGCAG
CTTTATATGACAATTTGAGAAACACATTACATATAGCACTTCTatttttt
tatcgttttttgagAATAAGGCATAATTTTCTCGGATTGCTTCTCAAATA
GTTCATGTGTACTTTTCTGCTTTATCTTTGCTGTTTGTGTATTAGTTCAC
GCAAGATttcacttttgacaaaaaattttattttgaaaactttttcgacT
TTTCACATTCTGAGaaatttttcgcggaattttttttttttagaatgcgA
TCGAGTTTTTCTCATTGAAAAGATTTATTTCTTTgtgaacaaaaattttt
catcaaaaccaaaaaagaTTAGTCCATCAATCTGGAAATAAATTTCCAAT
TCGGTTTTCAATTTTCCAACTTTGAATCTTTTTTACTTCTTGAGAtctag
atcttcatttttttctaacttcaatttttttaccgtaacaaataaaaatg
atttctcgctgagcaaaaagttttcattcaaaattctaaattttttcgCC
AGCAAttcggaaatatttttctcgttctgtttacaaaatttcagcttcaa
agtatttttagttCCTGAGATATCGagattcattttttgttgagcttttt
tttttactccgtgaaaagtttgaatttcttctttttttcttcagatgttc
ggaaaattttgaaggaaaagaaattcgcgaaattcgaagaaattttCCAA
CAAAATCCGAACATCATCAACTCGTTGCGTAGTGGTTATGATGATCGGAC
ACTTCTCATGGAGGCTGTTAATGTAGATCGTTTCGACGTTTTCGTTCACT
TGATGAATTATCCTCAAGATTTTTCACTCGTGAACAATGTTGGTTGGAAC
GTTCTTCATCTTGTTGGTCGTTATGGAAAAGTTCGTTATTCGGAAAAGTT
TGATCAACAAACAATCGAAAAGTTGATCAATGGAAGAGACGATCGCAACT
TCACACCATTGCATTGGGCAGCACGTTGGAACaaacatgacgtcatcaga
tggtTGTTGGCCAAAGGAGCGGATCATGAATTGAAAAATGATGCTGGTCG
ACGCCCTGATGAACATTATCGATGTGATGGTGTTACCAAAGAAATCATTC
GATCGTTTCGTTCGTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033167	XLOC_033167	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_214	supercontig	scaffold_214:35055..44720 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34344	3.43122e-06	0.0649694	0.00148437	0	0	0	0	0	0	0	0.0649777	0.272732	1.46584	0.191029	0.135696	0.187757	0	0.342448	0.604924	0.0850779	0	0	0.330088	0	1.27258e-07	0	1.00591	0.624998	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00052443 vs. Swiss-Prot (Human)

BLAST of TCONS_00052443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00052443 (transcript) - C. hemisphaerica