TCONS_00052439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052439
Unique NameTCONS_00052439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052439 ID=TCONS_00052439|Name=TCONS_00052439|organism=Clytia hemisphaerica|type=transcript|length=416bp
ggcgaagaagatctgaagataccgaCTTTTACCCCCTACCCCTAATACTT
CAGTGGTTGCCTTGTTCTTCTGTGAGATCCTTTCGGAGTTCGTCATCGCA
GCATTTGAGTAATTGTATGACCAATTCTGGGCCAGCGATCTTAGTGGCTG
TGACGTAGTCTTGCCATCGAACTGTGAAGTAAGACCAATCTTCACTGGAA
CCGCCAGTTGTTATTGTAGGACGTTTCACTTTCTCAACATGTGCAGTTTC
TCGAACAGAGAGTCCTTGTTGTGGCGTGTGGACACCAGATGCGTGAATCT
TGAGAAGTGTGCTTGCAAGATCAGAGTCAGTGTCTATTGTCGCATAGTCA
CATTCAGGAAAAGGGCATTGGACCACAACCATGACTCAAGGTGTCAGATT
GTGTAAGATAAAAACT
Run BLAST on NCBI

protein sequence of TCONS_00052439-protein

>TCONS_00052439-protein ID=TCONS_00052439-protein|Name=TCONS_00052439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MVVVQCPFPECDYATIDTDSDLASTLLKIHASGVHTPQQGLSVRETAHVE
KVKRPTITTGGSSEDWSYFTVRWQDYVTATKIAGPELVIQLLKCCDDELR
KDLTEEQGNH
Run BLAST on NCBI

transcript from alignment at scaffold_213:1351538..1351953

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052439 ID=TCONS_00052439|Name=TCONS_00052439|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at scaffold_213:1351538..1351953 (Clytia hemisphaerica)
AGTTTTTATCTTACACAATCTGACACCTTGAGTCATGGTTGTGGTCCAAT
GCCCTTTTCCTGAATGTGACTATGCGACAATAGACACTGACTCTGATCTT
GCAAGCACACTTCTCAAGATTCACGCATCTGGTGTCCACACGCCACAACA
AGGACTCTCTGTTCGAGAAACTGCACATGTTGAGAAAGTGAAACGTCCTA
CAATAACAACTGGCGGTTCCAGTGAAGATTGGTCTTACTTCACAGTTCGA
TGGCAAGACTACGTCACAGCCACTAAGATCGCTGGCCCAGAATTGGTCAT
ACAATTACTCAAATGCTGCGATGACGAACTCCGAAAGGATCTCACAGAAG
AACAAGGCAACCACTGAAGTATTAGGGGTAGGGGGTAAAAGtcggtatct
tcagatcttcttcgcc

Coding sequence (CDS) from alignment at scaffold_213:1351538..1351953

>TCONS_00052439 ID=TCONS_00052439|Name=TCONS_00052439|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_213:1351538..1351953 (Clytia hemisphaerica)
ATGGTTGTGGTCCAATGCCCTTTTCCTGAATGTGACTATGCGACAATAGA
CACTGACTCTGATCTTGCAAGCACACTTCTCAAGATTCACGCATCTGGTG
TCCACACGCCACAACAAGGACTCTCTGTTCGAGAAACTGCACATGTTGAG
AAAGTGAAACGTCCTACAATAACAACTGGCGGTTCCAGTGAAGATTGGTC
TTACTTCACAGTTCGATGGCAAGACTACGTCACAGCCACTAAGATCGCTG
GCCCAGAATTGGTCATACAATTACTCAAATGCTGCGATGACGAACTCCGA
AAGGATCTCACAGAAGAACAAGGCAACCACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033164XLOC_033164Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052439-proteinTCONS_00052439-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052439-exon-scaffold_213-1491911889:1351538..1351953TCONS_00052439-exon-scaffold_213-1491911889:1351538..1351953Clytia hemisphaericaexon
TCONS_00052439-exon-scaffold_213-1510915933:1351538..1351953TCONS_00052439-exon-scaffold_213-1510915933:1351538..1351953Clytia hemisphaericaexon
TCONS_00052439-exon-scaffold_213-1575043694:1351538..1351953TCONS_00052439-exon-scaffold_213-1575043694:1351538..1351953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1351538..1351953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3462	1.2324	1.4225	1.26319	0	0.45028	1.66446	0.630685	0.358165	0.75441	0	0.647772	0.27774	0.860704	0	0.364966	0.14135	0.1455	0	0.878521	1.13293	3.32266	0	0.44518	1.9455	2.92893	1.08233	0.479289	0.201835	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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