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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052435 ID=TCONS_00052435|Name=TCONS_00052435|organism=Clytia hemisphaerica|type=transcript|length=2084bp
aaatgataaacGATCTAGAATAAAGacagttttatttttcatcgTTATTT
GTTTTCACCCTACCGGACatgtgtcatttttttgcgACAGAAAAATTCGT
GACGAACTTATTTTTTCCAGTGAAAACTCAGCTTAATGTTAGTCTAGCAG
TCTAgaccttttcatgaattacgtcaggaacatcacttgcctcgcgTATG
CAAACAATTAGCACGGTGATTTTGTCCCTTGAGACAATAAGTGATTTCTT
TGTGAACAGAAAGTAGTTTTGACAAAATCaactgggagttaatcaccatg
gcaataatttcaaaacgaggcaagtgatgtttgtaacgcaatttatgaaa
aggcttACAAACCCTTCAAACTTCAtggatacacattttttatcaaGTTT
CTATACTTCTTTCATCTCCAGACATTGCTAAAGAAGTGGTTAATTCACCA
GAAAGACGTGAAtacatttccaagaaatttgaTGCTGGATACAAACAAAT
TCGTGAATGGACTGAAAAATTCTGGAAATGAAACAACAAACTGGGATCTT
TCTTATCAAAAATACAGAgaattgttgtttttctctttgaaCAAGAGGAA
GCTTTCATGCGGATGATAGTTGAGCTGAGAGGTGATTGTGGTATGTTGCC
ATAAGCAGAGAGTTTTAAATTCGACGTTGCTGCAAATCCTTGGATGGTGC
TGACAGCTCTACAGAACTATTCGAGTTCTTTGGACTCCAAAATTATTTCT
CATGCTGCTCATAGCGATGTGAGATGAACATTAAAAGGACTGGTTTTAGC
TAACATTTCAACCTCGACTCAATCAGAATGATGACGAAATTTTAACGTTT
TCAGTCTATTAAATAGTAGACACTAAAATGATTCTTCATTGGATTTAATA
GTAGTGtatcataaaaaaaacatctaatAGTATCTTGATTGATTTCTCca
atgttatttttgatttatctaCCGCTGTTCTATGAAGTTTTACTTTTGAT
AATCCCGATTCTTCTTGAATCTTCTGCTCTACTGCTTCTAAACATTCATC
CACCCCAGACTGCCTTACTCTTATCCTCTctctacacccccttctcacag
acacactgggaacccttcccactgaaaaatttgaacaaagtTTTACTTTT
GATAATTGTGATTCTTTTTTAATATTCCGCTCTACTCCTTTTAAATTCCA
AGACTGTCTTACAGTAATACTTTTCCTGTtagtttttgaaagattttcaa
caACCCTGACGAATCTAGGAGGGCCATTTATTGAGTATAGACCTTTTGTA
GGACGCGATGACATGTTGAATAATAAAACTTCAACATCACAACAATGACA
CACGAAAGCATAATTAAAAAACGCACAAACTTACTACTAAGTAAGTTCAA
TGCAATCCAAAAGCGTTCTAACTCCCTTGGGTACACTAAGAATGAAAGCC
TTAACTATAATTTATACCCATTGTAAATAAAACTTTGTTCCACATTCATT
GATCTCTAACAAAAAGACTGGTGTGAGCCAATGGACTCATCACGACCATT
TTGAGGACTTAACCGTCACAAGTCAAATCCTATTTTTATAGTAGAGTTCG
GTGTTTTGTTTAGTCCTTTATGACCACAGatgttttataaaaattacTAG
ATAAAGCTGCTCTGTATTTCCTAAGCTACAACAattaaagcaaaataatg
caCCATCTTTGCTGAGTAGACCATACATTAGCCAGGCACTGTTTGGTTCG
GAACCGGGAATTTCTTTCAATGATGACACCGAACCGTGGCCTACTCATTA
ATGGTGCATTACTTTGCTTCAACTAGTGACGAAGAAGCTCTATCCATtgt
tttataagatatctgtgtaTGTGACCCATTTTTGTTATGTCATTTTTTCC
TATTATTGGCCCTTTATGTAAATATGTATTTTTATTCATAACATTTTGTG
TTTGGTAAACATTCTTATTTTCGGTTCTGTAAGAATCCAGCTTTAAAGAA
AGACTTACCTtatttaacacccctgtctcagtgacccaaAGTCTGCCGGG
ATTACTATGAATAGAATAGTCAGGAAGAAATCAC Run BLAST on NCBI protein sequence of TCONS_00052435-protein >TCONS_00052435-protein ID=TCONS_00052435-protein|Name=TCONS_00052435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MSSRPTKGLYSINGPPRFVRVVENLSKTNRKSITVRQSWNLKGVERNIKK
ESQLSKVKLCSNFSVGRVPSVSVRRGCRERIRVRQSGVDECLEAVEQKIQ
EESGLSKVKLHRTAVDKSKITLEKSIKILLDVFFMIHYY Run BLAST on NCBI transcript from alignment at scaffold_213:1078298..1080381 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052435 ID=TCONS_00052435|Name=TCONS_00052435|organism=Clytia hemisphaerica|type=transcript|length=2084bp|location=Sequence derived from alignment at scaffold_213:1078298..1080381 (Clytia hemisphaerica)
GTGATTTCTTCCTGACTATTCTATTCATAGTAATCCCGGCAGACTttggg
tcactgagacaggggtgttaaataAGGTAAGTCTTTCTTTAAAGCTGGAT
TCTTACAGAACCGAAAATAAGAATGTTTACCAAACACAAAATGTTATGAA
TAAAAATACATATTTACATAAAGGGCCAATAATAGGAAAAAATGACATAA
CAAAAATGGGTCACAtacacagatatcttataaaacaATGGATAGAGCTT
CTTCGTCACTAGTTGAAGCAAAGTAATGCACCATTAATGAGTAGGCCACG
GTTCGGTGTCATCATTGAAAGAAATTCCCGGTTCCGAACCAAACAGTGCC
TGGCTAATGTATGGTCTACTCAGCAAAGATGGtgcattattttgctttaa
tTGTTGTAGCTTAGGAAATACAGAGCAGCTTTATCTAgtaatttttataa
aacatCTGTGGTCATAAAGGACTAAACAAAACACCGAACTCTACTATAAA
AATAGGATTTGACTTGTGACGGTTAAGTCCTCAAAATGGTCGTGATGAGT
CCATTGGCTCACACCAGTCTTTTTGTTAGAGATCAATGAATGTGGAACAA
AGTTTTATTTACAATGGGTATAAATTATAGTTAAGGCTTTCATTCTTAGT
GTACCCAAGGGAGTTAGAACGCTTTTGGATTGCATTGAACTTACTTAGTA
GTAAGTTTGTGCGTTTTTTAATTATGCTTTCGTGTGTCATTGTTGTGATG
TTGAAGTTTTATTATTCAACATGTCATCGCGTCCTACAAAAGGTCTATAC
TCAATAAATGGCCCTCCTAGATTCGTCAGGGTtgttgaaaatctttcaaa
aactaACAGGAAAAGTATTACTGTAAGACAGTCTTGGAATTTAAAAGGAG
TAGAGCGGAATATTAAAAAAGAATCACAATTATCAAAAGTAAAactttgt
tcaaatttttcagtgggaagggttcccagtgtgtctgtgagaagggggtg
tagagAGAGGATAAGAGTAAGGCAGTCTGGGGTGGATGAATGTTTAGAAG
CAGTAGAGCAGAAGATTCAAGAAGAATCGGGATTATCAAAAGTAAAACTT
CATAGAACAGCGGtagataaatcaaaaataacattgGAGAAATCAATCAA
GATACTattagatgttttttttatgataCACTACTATTAAATCCAATGAA
GAATCATTTTAGTGTCTACTATTTAATAGACTGAAAACGTTAAAATTTCG
TCATCATTCTGATTGAGTCGAGGTTGAAATGTTAGCTAAAACCAGTCCTT
TTAATGTTCATCTCACATCGCTATGAGCAGCATGAGAAATAATTTTGGAG
TCCAAAGAACTCGAATAGTTCTGTAGAGCTGTCAGCACCATCCAAGGATT
TGCAGCAACGTCGAATTTAAAACTCTCTGCTTATGGCAACATACCACAAT
CACCTCTCAGCTCAACTATCATCCGCATGAAAGCTTCCTCTTGttcaaag
agaaaaacaacaattcTCTGTATTTTTGATAAGAAAGATCCCAGTTTGTT
GTTTCATTTCCAGAATTTTTCAGTCCATTCACGAATTTGTTTGTATCCAG
CAtcaaatttcttggaaatgtaTTCACGTCTTTCTGGTGAATTAACCACT
TCTTTAGCAATGTCTGGAGATGAAAGAAGTATAGAAACttgataaaaaat
gtgtatccaTGAAGTTTGAAGGGTTTGTaagccttttcataaattgcgtt
acaaacatcacttgcctcgttttgaaattattgccatggtgattaactcc
cagttGATTTTGTCAAAACTACTTTCTGTTCACAAAGAAATCACTTATTG
TCTCAAGGGACAAAATCACCGTGCTAATTGTTTGCATAcgcgaggcaagt
gatgttcctgacgtaattcatgaaaaggtcTAGACTGCTAGACTAACATT
AAGCTGAGTTTTCACTGGAAAAAATAAGTTCGTCACGAATTTTTCTGTcg
caaaaaaatgacacatGTCCGGTAGGGTGAAAACAAATAAcgatgaaaaa
taaaactgtCTTTATTCTAGATCgtttatcattt Coding sequence (CDS) from alignment at scaffold_213:1078298..1080381 >TCONS_00052435 ID=TCONS_00052435|Name=TCONS_00052435|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_213:1078298..1080381 (Clytia hemisphaerica)
ATGTCATCGCGTCCTACAAAAGGTCTATACTCAATAAATGGCCCTCCTAG
ATTCGTCAGGGTtgttgaaaatctttcaaaaactaACAGGAAAAGTATTA
CTGTAAGACAGTCTTGGAATTTAAAAGGAGTAGAGCGGAATATTAAAAAA
GAATCACAATTATCAAAAGTAAAactttgttcaaatttttcagtgggaag
ggttcccagtgtgtctgtgagaagggggtgtagagAGAGGATAAGAGTAA
GGCAGTCTGGGGTGGATGAATGTTTAGAAGCAGTAGAGCAGAAGATTCAA
GAAGAATCGGGATTATCAAAAGTAAAACTTCATAGAACAGCGGtagataa
atcaaaaataacattgGAGAAATCAATCAAGATACTattagatgtttttt
ttatgataCACTACTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052435-exon-scaffold_213-1491911889:1078298..1080381 | TCONS_00052435-exon-scaffold_213-1491911889:1078298..1080381 | Clytia hemisphaerica | exon |
| TCONS_00052435-exon-scaffold_213-1510915933:1078298..1080381 | TCONS_00052435-exon-scaffold_213-1510915933:1078298..1080381 | Clytia hemisphaerica | exon |
| TCONS_00052435-exon-scaffold_213-1575043694:1078298..1080381 | TCONS_00052435-exon-scaffold_213-1575043694:1078298..1080381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1078298..1080381 . |
Blast
The following BLAST results are available for this feature:
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