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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052432 ID=TCONS_00052432|Name=TCONS_00052432|organism=Clytia hemisphaerica|type=transcript|length=1424bp
AGGCACCCCGTGGCCAGGGCAGGTTGTCATCCTGTGCCTGCGACCGTACA
AGCTGCATTGTCAGCTCTTACAAACCAAAGCTGCATTGTCAGCTCGATTA
CAAACCAAAGCTGCGCTGTCAGCTCTTACAAGTCAACTCAAAGCTGCGCT
GTCAGCTCTTACAAACCAAAGCTGCGCTGTCAGCTCTTACAAATATCTAA
TTGCTGTATATAAGTTCATAATAATTTTGTAGTGCTAATTTTTAAAGTGT
AAAAATGATATCCATTGAGTCATATCGTTCACGTATAGGATGTTTTGCTT
TTACAGCTCAGAGAAATGTTAAAGGTATTTCTAAATCTATTGTTATTGGT
TCAGAACTTTCCAATGATGCTTTTTCTAAACTATTGAGACCAGTTCGCTT
TGTAGCACTTTTAAcaatccttttttttgcaattccAAAATCATACGAGA
TAACGTTTTATGAAACACCACTGGATTTTTTgcatctttcaaaaaatggt
atatttgttagATATCCCAATGTGACGCATAATTTAGGAGATCCAAATCT
TACTTTTCTTAAAGTTAATTACACACTTTTATTATCAGGAGATATAGAAC
TCAATCCAGGTCCAAACACTGTAGAAATTAAAAGTGTGCAAGGGTCTTTT
CATCagggaaatttggaaaggttTGGTGAGACTGCAGGCATACAATGTtc
gtcaaattgtttttttgctatttgTTATGCGCAACTTAGAAAATTATCAT
TGTGGAAGACTCATGATTTGGATTACGTTTTACATCAAGGTGAtctgaat
ttcaaaaaacttggcATCACTGGGCAGTCCCCTTATATTGAagagttttc
aaaaacaattgaaatagGAAATAGTACTTGTACACtagatttcaatattt
ttgaaggTTACTTTGTGACCGGAGATAATATTTCAGTAAATTTTATCAGT
GAAGAAATCCTTATGCAGCACTCTGGTGCAGTTTTAGTAATTTCTGGTAA
TTGTTTAGGTGTGATGCACtacaacaaaaaatattttctttttgattcaC
ACAGTAGAGACTCAACAGGACGTCAAGTTCCTGGAGATGTTGGCAAGTCA
GTACTTTTGGAATTTCACCATGTAAATGAAATCAAGCAGCACATAAGATC
TGAATACAACGCAAATTTATTTAACATTATATATCTGAAAACTGCCTTTC
AAGAAGtagaaaatactaaaaatgttattttgagGGAAGTATCACGCCGT
CAAAAAAATGCTTCACACAAAAGATCATATGAACAAATAAAAGGTACTGA
AAAgcatgaaaagaaaaataaagttaaGAGACAATTCCGCAAACAAAATA
AAGGTTCTGAAAAACAtgaacaagaaaaagaaaaaaaacgtctTTCATGG
CAACAAATGAAAGGGTCTGAAAAA Run BLAST on NCBI protein sequence of TCONS_00052432-protein >TCONS_00052432-protein ID=TCONS_00052432-protein|Name=TCONS_00052432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MISIESYRSRIGCFAFTAQRNVKGISKSIVIGSELSNDAFSKLLRPVRFV
ALLTILFFAIPKSYEITFYETPLDFLHLSKNGIFVRYPNVTHNLGDPNLT
FLKVNYTLLLSGDIELNPGPNTVEIKSVQGSFHQGNLERFGETAGIQCSS
NCFFAICYAQLRKLSLWKTHDLDYVLHQGDLNFKKLGITGQSPYIEEFSK
TIEIGNSTCTLDFNIFEGYFVTGDNISVNFISEEILMQHSGAVLVISGNC
LGVMHYNKKYFLFDSHSRDSTGRQVPGDVGKSVLLEFHHVNEIKQHIRSE
YNANLFNIIYLKTAFQEVENTKNVILREVSRRQKNASHKRSYEQIKGTEK
HEKKNKVKRQFRKQNKGSEKHEQEKEKKRLSWQQMKGSEK Run BLAST on NCBI transcript from alignment at scaffold_213:935998..937421 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052432 ID=TCONS_00052432|Name=TCONS_00052432|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at scaffold_213:935998..937421 (Clytia hemisphaerica)
TTTTTCAGACCCTTTCATTTGTTGCCATGAAagacgttttttttcttttt
cttgttcaTGTTTTTCAGAACCTTTATTTTGTTTGCGGAATTGTCTCtta
actttatttttcttttcatgcTTTTCAGTACCTTTTATTTGTTCATATGA
TCTTTTGTGTGAAGCATTTTTTTGACGGCGTGATACTTCCctcaaaataa
catttttagtattttctaCTTCTTGAAAGGCAGTTTTCAGATATATAATG
TTAAATAAATTTGCGTTGTATTCAGATCTTATGTGCTGCTTGATTTCATT
TACATGGTGAAATTCCAAAAGTACTGACTTGCCAACATCTCCAGGAACTT
GACGTCCTGTTGAGTCTCTACTGTGtgaatcaaaaagaaaatattttttg
ttgtaGTGCATCACACCTAAACAATTACCAGAAATTACTAAAACTGCACC
AGAGTGCTGCATAAGGATTTCTTCACTGATAAAATTTACTGAAATATTAT
CTCCGGTCACAAAGTAAccttcaaaaatattgaaatctaGTGTACAAGTA
CTATTTCctatttcaattgtttttgaaaactctTCAATATAAGGGGACTG
CCCAGTGATgccaagttttttgaaattcagaTCACCTTGATGTAAAACGT
AATCCAAATCATGAGTCTTCCACAATGATAATTTTCTAAGTTGCGCATAA
caaatagcaaaaaaacaatttgacgaACATTGTATGCCTGCAGTCTCACC
AaacctttccaaatttccctGATGAAAAGACCCTTGCACACTTTTAATTT
CTACAGTGTTTGGACCTGGATTGAGTTCTATATCTCCTGATAATAAAAGT
GTGTAATTAACTTTAAGAAAAGTAAGATTTGGATCTCCTAAATTATGCGT
CACATTGGGATATctaacaaatataccattttttgaaagatgcAAAAAAT
CCAGTGGTGTTTCATAAAACGTTATCTCGTATGATTTTggaattgcaaaa
aaaaggattgTTAAAAGTGCTACAAAGCGAACTGGTCTCAATAGTTTAGA
AAAAGCATCATTGGAAAGTTCTGAACCAATAACAATAGATTTAGAAATAC
CTTTAACATTTCTCTGAGCTGTAAAAGCAAAACATCCTATACGTGAACGA
TATGACTCAATGGATATCATTTTTACACTTTAAAAATTAGCACTACAAAA
TTATTATGAACTTATATACAGCAATTAGATATTTGTAAGAGCTGACAGCG
CAGCTTTGGTTTGTAAGAGCTGACAGCGCAGCTTTGAGTTGACTTGTAAG
AGCTGACAGCGCAGCTTTGGTTTGTAATCGAGCTGACAATGCAGCTTTGG
TTTGTAAGAGCTGACAATGCAGCTTGTACGGTCGCAGGCACAGGATGACA
ACCTGCCCTGGCCACGGGGTGCCT Coding sequence (CDS) from alignment at scaffold_213:935998..937421 >TCONS_00052432 ID=TCONS_00052432|Name=TCONS_00052432|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_213:935998..937421 (Clytia hemisphaerica)
TTTTTCAGACCCTTTCATTTGTTGCCATGAAagacgttttttttcttttt
cttgttcaTGTTTTTCAGAACCTTTATTTTGTTTGCGGAATTGTCTCtta
actttatttttcttttcatgcTTTTCAGTACCTTTTATTTGTTCATATGA
TCTTTTGTGTGAAGCATTTTTTTGACGGCGTGATACTTCCctcaaaataa
catttttagtattttctaCTTCTTGAAAGGCAGTTTTCAGATATATAATG
TTAAATAAATTTGCGTTGTATTCAGATCTTATGTGCTGCTTGATTTCATT
TACATGGTGAAATTCCAAAAGTACTGACTTGCCAACATCTCCAGGAACTT
GACGTCCTGTTGAGTCTCTACTGTGtgaatcaaaaagaaaatattttttg
ttgtaGTGCATCACACCTAAACAATTACCAGAAATTACTAAAACTGCACC
AGAGTGCTGCATAAGGATTTCTTCACTGATAAAATTTACTGAAATATTAT
CTCCGGTCACAAAGTAAccttcaaaaatattgaaatctaGTGTACAAGTA
CTATTTCctatttcaattgtttttgaaaactctTCAATATAAGGGGACTG
CCCAGTGATgccaagttttttgaaattcagaTCACCTTGATGTAAAACGT
AATCCAAATCATGAGTCTTCCACAATGATAATTTTCTAAGTTGCGCATAA
caaatagcaaaaaaacaatttgacgaACATTGTATGCCTGCAGTCTCACC
AaacctttccaaatttccctGATGAAAAGACCCTTGCACACTTTTAATTT
CTACAGTGTTTGGACCTGGATTGAGTTCTATATCTCCTGATAATAAAAGT
GTGTAATTAACTTTAAGAAAAGTAAGATTTGGATCTCCTAAATTATGCGT
CACATTGGGATATctaacaaatataccattttttgaaagatgcAAAAAAT
CCAGTGGTGTTTCATAAAACGTTATCTCGTATGATTTTggaattgcaaaa
aaaaggattgTTAAAAGTGCTACAAAGCGAACTGGTCTCAATAGTTTAGA
AAAAGCATCATTGGAAAGTTCTGAACCAATAACAATAGATTTAGAAATAC
CTTTAACATTTCTCTGAGCTGTAAAAGCAAAACATCCTATACGTGAACGA
TATGACTCAATGGATATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052432-exon-scaffold_213-1491911889:935998..937421 | TCONS_00052432-exon-scaffold_213-1491911889:935998..937421 | Clytia hemisphaerica | exon |
| TCONS_00052432-exon-scaffold_213-1510915933:935998..937421 | TCONS_00052432-exon-scaffold_213-1510915933:935998..937421 | Clytia hemisphaerica | exon |
| TCONS_00052432-exon-scaffold_213-1575043694:935998..937421 | TCONS_00052432-exon-scaffold_213-1575043694:935998..937421 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:935998..937421 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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