TCONS_00052427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052427
Unique NameTCONS_00052427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1041

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052427 ID=TCONS_00052427|Name=TCONS_00052427|organism=Clytia hemisphaerica|type=transcript|length=1041bp
TAAAATTGCCATCCGAGCTTGAAGACCAAGAGAAGCCGACCAAATTTATT
AAAACTTTACCGTTATTCAATTCCAGGAGAATTCTAAAACCAATCAGCTG
TCGATTTCGACGTTACAGCTCAATGATTGAGATTGTTACCAGAACGTCTA
CTCCGAGCTTCCGTAAGGCACAGGTGCGGTTCAGTCGAACGGAACCGAGA
AACAAACGTAAAGTCAACCCTCGTGATTTGTTCGATGAAATTGACAAGTA
TGATGAACCAAGCTCCTCCAAAAAGGCACGCAAAGCGATCAATACTTCAC
CCACCTCATTACCTCCTCCCGTACAACGCTTACCGCTTTTCAAACCTATG
ACAGAGATGCGTTGCTATGGTGACGCAGAGCTTGGAGTGCAGCCATTACC
CAGCAGTAAAGAGTGTCAATCATGTTGCACGAGTGAAACCTTGATGTGGC
GGGATACAGAAGATGGCATCCCGCTCTGTAACGCTTGTGGAATCCGGTGG
AGAAAGTACCGCTATCGTTGTACTGAATGTTGGTATGTTCCCATGCAAGA
TGAGCTGAAACGATTGAACTGTGGAAGCTGTGGTAAATATGATACCTTCA
AAAGATTTAAACCCTTCAAGCGACATAAAACTTCTTTCTTGTAAGAGTAC
GTACAAGGGGAGCAGGGAAGTTCAATTGTTCCATTTTTTTGAGTAACCAA
TGAAATGAACCAGGTTATCTGATTGACTCAAAAAAAGTGTCGTGATAATC
TAGAACAAGCATCGCAAATCAAAACAACGCGATTGGCGTTTGTCAAAAAC
TCTTTTCAAAAGGTCAGAATAGGGTAGTAAGTGTCGTCACCTAAAGGCTT
GACATTTTCCATGTGATTTTAGGATTCCCTGTTTTAAAGGGAAAGTCAGG
GCATAATCTAAAGGACTTACTCTTGTGTGATTAATTGTAGAGTGgggtca
ttttgcaatttttggaaCAAATCACCCCCATatcactttataatgacccc
ccattttatgacctTTATGCTACGAATTGCCAAAGtttggc
Run BLAST on NCBI

protein sequence of TCONS_00052427-protein

>TCONS_00052427-protein ID=TCONS_00052427-protein|Name=TCONS_00052427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
KLPSELEDQEKPTKFIKTLPLFNSRRILKPISCRFRRYSSMIEIVTRTST
PSFRKAQVRFSRTEPRNKRKVNPRDLFDEIDKYDEPSSSKKARKAINTSP
TSLPPPVQRLPLFKPMTEMRCYGDAELGVQPLPSSKECQSCCTSETLMWR
DTEDGIPLCNACGIRWRKYRYRCTECWYVPMQDELKRLNCGSCGKYDTFK
RFKPFKRHKTSFL
Run BLAST on NCBI

transcript from alignment at scaffold_213:755033..756073

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052427 ID=TCONS_00052427|Name=TCONS_00052427|organism=Clytia hemisphaerica|type=transcript|length=1041bp|location=Sequence derived from alignment at scaffold_213:755033..756073 (Clytia hemisphaerica)
gccaaaCTTTGGCAATTCGTAGCATAAaggtcataaaatggggggtcatt
ataaagtgatATGGGGGTGATTTGttccaaaaattgcaaaatgacccCAC
TCTACAATTAATCACACAAGAGTAAGTCCTTTAGATTATGCCCTGACTTT
CCCTTTAAAACAGGGAATCCTAAAATCACATGGAAAATGTCAAGCCTTTA
GGTGACGACACTTACTACCCTATTCTGACCTTTTGAAAAGAGTTTTTGAC
AAACGCCAATCGCGTTGTTTTGATTTGCGATGCTTGTTCTAGATTATCAC
GACACTTTTTTTGAGTCAATCAGATAACCTGGTTCATTTCATTGGTTACT
CAAAAAAATGGAACAATTGAACTTCCCTGCTCCCCTTGTACGTACTCTTA
CAAGAAAGAAGTTTTATGTCGCTTGAAGGGTTTAAATCTTTTGAAGGTAT
CATATTTACCACAGCTTCCACAGTTCAATCGTTTCAGCTCATCTTGCATG
GGAACATACCAACATTCAGTACAACGATAGCGGTACTTTCTCCACCGGAT
TCCACAAGCGTTACAGAGCGGGATGCCATCTTCTGTATCCCGCCACATCA
AGGTTTCACTCGTGCAACATGATTGACACTCTTTACTGCTGGGTAATGGC
TGCACTCCAAGCTCTGCGTCACCATAGCAACGCATCTCTGTCATAGGTTT
GAAAAGCGGTAAGCGTTGTACGGGAGGAGGTAATGAGGTGGGTGAAGTAT
TGATCGCTTTGCGTGCCTTTTTGGAGGAGCTTGGTTCATCATACTTGTCA
ATTTCATCGAACAAATCACGAGGGTTGACTTTACGTTTGTTTCTCGGTTC
CGTTCGACTGAACCGCACCTGTGCCTTACGGAAGCTCGGAGTAGACGTTC
TGGTAACAATCTCAATCATTGAGCTGTAACGTCGAAATCGACAGCTGATT
GGTTTTAGAATTCTCCTGGAATTGAATAACGGTAAAGTTTTAATAAATTT
GGTCGGCTTCTCTTGGTCTTCAAGCTCGGATGGCAATTTTA

Coding sequence (CDS) from alignment at scaffold_213:755033..756073

>TCONS_00052427 ID=TCONS_00052427|Name=TCONS_00052427|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_213:755033..756073 (Clytia hemisphaerica)
TTACAAGAAAGAAGTTTTATGTCGCTTGAAGGGTTTAAATCTTTTGAAGG
TATCATATTTACCACAGCTTCCACAGTTCAATCGTTTCAGCTCATCTTGC
ATGGGAACATACCAACATTCAGTACAACGATAGCGGTACTTTCTCCACCG
GATTCCACAAGCGTTACAGAGCGGGATGCCATCTTCTGTATCCCGCCACA
TCAAGGTTTCACTCGTGCAACATGATTGACACTCTTTACTGCTGGGTAAT
GGCTGCACTCCAAGCTCTGCGTCACCATAGCAACGCATCTCTGTCATAGG
TTTGAAAAGCGGTAAGCGTTGTACGGGAGGAGGTAATGAGGTGGGTGAAG
TATTGATCGCTTTGCGTGCCTTTTTGGAGGAGCTTGGTTCATCATACTTG
TCAATTTCATCGAACAAATCACGAGGGTTGACTTTACGTTTGTTTCTCGG
TTCCGTTCGACTGAACCGCACCTGTGCCTTACGGAAGCTCGGAGTAGACG
TTCTGGTAACAATCTCAATCATTGAGCTGTAACGTCGAAATCGACAGCTG
ATTGGTTTTAGAATTCTCCTGGAATTGAATAACGGTAAAGTTTTAATAAA
TTTGGTCGGCTTCTCTTGGTCTTCAAGCTCGGATGGCAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033152XLOC_033152Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052427-proteinTCONS_00052427-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052427-exon-scaffold_213-1491911889:755033..756073TCONS_00052427-exon-scaffold_213-1491911889:755033..756073Clytia hemisphaericaexon
TCONS_00052427-exon-scaffold_213-1510915933:755033..756073TCONS_00052427-exon-scaffold_213-1510915933:755033..756073Clytia hemisphaericaexon
TCONS_00052427-exon-scaffold_213-1575043694:755033..756073TCONS_00052427-exon-scaffold_213-1575043694:755033..756073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:755033..756073 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127925	0	0.241405	0.236177	0	0.0454408	0.109645	0.0513241	0.0359776	0.0445091	0.0432016	0.028399	0.0850786	0.117807	0.242133	0.103938	0.480162	0.754631	0.0453289	0	0.412282	0.542962	0.342243	0.222249	13.5516	14.0148	0.23388	0.0624007	0.236644	0.0482205
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00052427 vs. Swiss-Prot (Human)
Match: ZGLP1 (GATA-type zinc finger protein 1 OS=Homo sapiens GN=ZGLP1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.357e-16
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:  408 KECQSCCTSETLMWRDTEDGIPLCNACGIRWRKYRYRCTECWYVPMQDELKRLNCGSCG 584
            + C SC T  T +WRD EDG PLCNACGIR++KY  RC+ CW VP ++   +  CG CG
Sbjct:  204 RRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTRCSSCWLVPRKNVQPKRLCGRCG 262
The following BLAST results are available for this feature:
BLAST of TCONS_00052427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZGLP18.357e-1654.24GATA-type zinc finger protein 1 OS=Homo sapiens GN... [more]
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