TCONS_00052413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052413
Unique NameTCONS_00052413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052413 ID=TCONS_00052413|Name=TCONS_00052413|organism=Clytia hemisphaerica|type=transcript|length=282bp
NACACAAAAAGCTAGTCAGTCAGATAAATCAATTTCTGGCTCCTCCTCTT
GGCTCTTTTTGTgtaattcaattgtgtaatttacagagcaATTTCAACAA
TCCTAACGCTCTTTTTAGCCTAGAGGCTAAATGTCTAAATCTACGAGAAC
TGATTTTAAAGAGTATCatataaaaaatgaacattccaatcacagggatt
tccccagagacaagatgtttacttttcgaattcaaaattcgaatgaaagg
aaaacattcgaatcgacaACAAAGGGTTACAC
Run BLAST on NCBI

transcript from alignment at scaffold_213:408044..408325

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052413 ID=TCONS_00052413|Name=TCONS_00052413|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at scaffold_213:408044..408325 (Clytia hemisphaerica)
GTGTAACCCTTTGTtgtcgattcgaatgttttcctttcattcgaattttg
aattcgaaaagtaaacatcttgtctctggggaaatccctgtgattggaat
gttcattttttatatGATACTCTTTAAAATCAGTTCTCGTAGATTTAGAC
ATTTAGCCTCTAGGCTAAAAAGAGCGTTAGGATTGTTGAAATtgctctgt
aaattacacaattgaattacACAAAAAGAGCCAAGAGGAGGAGCCAGAAA
TTGATTTATCTGACTGACTAGCTTTTTGTGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033138XLOC_033138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052413-exon-scaffold_213-1491911889:408044..408325TCONS_00052413-exon-scaffold_213-1491911889:408044..408325Clytia hemisphaericaexon
TCONS_00052413-exon-scaffold_213-1510915933:408044..408325TCONS_00052413-exon-scaffold_213-1510915933:408044..408325Clytia hemisphaericaexon
TCONS_00052413-exon-scaffold_213-1575043694:408044..408325TCONS_00052413-exon-scaffold_213-1575043694:408044..408325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:408044..408325 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3883	0.0634777	0.234179	0.660832	4.3242	1.93454	8.19086	1.08714	3.07299	6.52315	13.06	4.29108	2.04125	0.807098	1.84795	2.51658	0.0097129	4.79314	2.78877	5.42915	5.41731	7.65939	3.77758	6.13232	6.30309	0	10.7578	17.7437	9.25023	6.27486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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