TCONS_00052411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052411
Unique NameTCONS_00052411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052411 ID=TCONS_00052411|Name=TCONS_00052411|organism=Clytia hemisphaerica|type=transcript|length=320bp
CTGGCGATCAAACCACAATCAAGATCAGAGAAAGAAGTTGCTTTTGCTGA
CGATCTGACAGCTGCTGGATCCATCCGCAACCTTCGAAGCTGGTGGGACA
AATTAAGTGTTGAAGGTCCACTGTTTGGCTACCATCCAAAGCCCACTAAA
TCGTGGCTCATTGTAAAGAATGAGAAAATTGCAGAAGCAACCAAAGCTTT
TCAAGGTACCAATATCCAAATAACAACACAAGGATCAAAGCACCTCGGTG
CAGTAATTGGCAGCCAAGAGTTTAAAGATTCGTTCATAGCGGAAAAAGTT
CTGACCTGGGTAAACGAGAT
Run BLAST on NCBI

protein sequence of TCONS_00052411-protein

>TCONS_00052411-protein ID=TCONS_00052411-protein|Name=TCONS_00052411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
LAIKPQSRSEKEVAFADDLTAAGSIRNLRSWWDKLSVEGPLFGYHPKPTK
SWLIVKNEKIAEATKAFQGTNIQITTQGSKHLGAVIGSQEFKDSFIAEKV
LTWVNE
Run BLAST on NCBI

transcript from alignment at scaffold_213:377312..377631

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052411 ID=TCONS_00052411|Name=TCONS_00052411|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at scaffold_213:377312..377631 (Clytia hemisphaerica)
ATCTCGTTTACCCAGGTCAGAACTTTTTCCGCTATGAACGAATCTTTAAA
CTCTTGGCTGCCAATTACTGCACCGAGGTGCTTTGATCCTTGTGTTGTTA
TTTGGATATTGGTACCTTGAAAAGCTTTGGTTGCTTCTGCAATTTTCTCA
TTCTTTACAATGAGCCACGATTTAGTGGGCTTTGGATGGTAGCCAAACAG
TGGACCTTCAACACTTAATTTGTCCCACCAGCTTCGAAGGTTGCGGATGG
ATCCAGCAGCTGTCAGATCGTCAGCAAAAGCAACTTCTTTCTCTGATCTT
GATTGTGGTTTGATCGCCAG

Coding sequence (CDS) from alignment at scaffold_213:377312..377631

>TCONS_00052411 ID=TCONS_00052411|Name=TCONS_00052411|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_213:377312..377631 (Clytia hemisphaerica)
CTCGTTTACCCAGGTCAGAACTTTTTCCGCTATGAACGAATCTTTAAACT
CTTGGCTGCCAATTACTGCACCGAGGTGCTTTGATCCTTGTGTTGTTATT
TGGATATTGGTACCTTGAAAAGCTTTGGTTGCTTCTGCAATTTTCTCATT
CTTTACAATGAGCCACGATTTAGTGGGCTTTGGATGGTAGCCAAACAGTG
GACCTTCAACACTTAATTTGTCCCACCAGCTTCGAAGGTTGCGGATGGAT
CCAGCAGCTGTCAGATCGTCAGCAAAAGCAACTTCTTTCTCTGATCTTGA
TTGTGGTTTGATCGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033136XLOC_033136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052411-exon-scaffold_213-1491911889:377312..377631TCONS_00052411-exon-scaffold_213-1491911889:377312..377631Clytia hemisphaericaexon
TCONS_00052411-exon-scaffold_213-1510915933:377312..377631TCONS_00052411-exon-scaffold_213-1510915933:377312..377631Clytia hemisphaericaexon
TCONS_00052411-exon-scaffold_213-1575043694:377312..377631TCONS_00052411-exon-scaffold_213-1575043694:377312..377631Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052411-proteinTCONS_00052411-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:377312..377631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.12608	0.562389	0.354009	3.44778	1.36224	2.40019	1.15396	1.1306	1.00073	1.29511	2.12839	1.46728	1.76075	0.626377	1.1371	0	1.02021	0.679442	0.52356	0.420553	0.452141	0.498727	0.333133	5.35645	2.44981	1.21585	0	0.796166	1.08418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top