TCONS_00052402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052402
Unique NameTCONS_00052402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052402 ID=TCONS_00052402|Name=TCONS_00052402|organism=Clytia hemisphaerica|type=transcript|length=344bp
gtgaaaaaagctAATTCAATGGCTGGTCTTATCAGGCGGACCTTCACGTA
CCTCACTCCAGAACTGTTTCGAAAACTGTACGTAACATTTGTCAGACCAC
NNNNNNNNNNCTCGGCCCAGATGAGCTTCACCCAAGGATGCTCAAGGAGC
TTGCTGAATACATCGCAGAACCGATTTTCCTGATAatgacaaaatctttc
aatgagAGTTGTCTTTCGAAGGACTGGAAGCTTGCAAACATATCACCTGT
ctataaaaaaggaaacaaaaacatagcaGAAAATTATCGTCCAATCAGTT
TAACATCTATAGTTTGCCGAATAATGGAAAAGATTCTCAAAACN
Run BLAST on NCBI

transcript from alignment at scaffold_213:45574..45917

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052402 ID=TCONS_00052402|Name=TCONS_00052402|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at scaffold_213:45574..45917 (Clytia hemisphaerica)
NGTTTTGAGAATCTTTTCCATTATTCGGCAAACTATAGATGTTAAACTGA
TTGGACGATAATTTTCtgctatgtttttgtttccttttttatagACAGGT
GATATGTTTGCAAGCTTCCAGTCCTTCGAAAGACAACTctcattgaaaga
ttttgtcatTATCAGGAAAATCGGTTCTGCGATGTATTCAGCAAGCTCCT
TGAGCATCCTTGGGTGAAGCTCATCTGGGCCGAGNNNNNNNNNNGTGGTC
TGACAAATGTTACGTACAGTTTTCGAAACAGTTCTGGAGTGAGGTACGTG
AAGGTCCGCCTGATAAGACCAGCCATTGAATTagcttttttcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033127XLOC_033127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052402-exon-scaffold_213-1491911889:45574..45917TCONS_00052402-exon-scaffold_213-1491911889:45574..45917Clytia hemisphaericaexon
TCONS_00052402-exon-scaffold_213-1510915933:45574..45917TCONS_00052402-exon-scaffold_213-1510915933:45574..45917Clytia hemisphaericaexon
TCONS_00052402-exon-scaffold_213-1575043694:45574..45917TCONS_00052402-exon-scaffold_213-1575043694:45574..45917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:45574..45917 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01657	2.5415	2.71371	2.71343	0.772335	3.94143	0.808425	0.599124	0	0	0	2.44794	0.352711	1.49799	0.237566	0.884705	0	1.09518	2.23931	2.05847	1.0221	1.7699	0.120549	0.403033	0	0	2.70067	1.37532	2.51755	1.8579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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