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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052387 ID=TCONS_00052387|Name=TCONS_00052387|organism=Clytia hemisphaerica|type=transcript|length=400bp
CGATCATATGGTCAAGTATATAATTTTTTGAGGTATTACGATCTTACGCA
TCTTTGAGTGGTGTATCAAAGCCCGAAAGATAACAATATAACAATGACTT
CACGACGACAATCACAAAATGGAGGCAAAATAAAAACTGGAGGCTATGAG
TTTAAAGTGAAAGACCTCACCAATGAAATTTATCAATGTAAAATTTGTAC
ACATTTAATCCGAACCTATATCGAGTTACCATGTACAGAATTTCATGGTT
TTTGTAAGAATTGTTTGATTGATTTGGAACGTCAAACAATGGAACGAAAT
GACAATAGTGGTGAGAGAGTCAAATATTTCTGCAAGATATGCGGTGAAGA
GTACGACCCAGCTAATGTAAGTAAAATGTTTTTCTGTACTTCTGGGTAAC Run BLAST on NCBI protein sequence of TCONS_00052387-protein >TCONS_00052387-protein ID=TCONS_00052387-protein|Name=TCONS_00052387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MTSRRQSQNGGKIKTGGYEFKVKDLTNEIYQCKICTHLIRTYIELPCTEF
HGFCKNCLIDLERQTMERNDNSGERVKYFCKICGEEYDPANVSKMFFCTS
G Run BLAST on NCBI transcript from alignment at scaffold_213:1076131..1077263- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052387 ID=TCONS_00052387|Name=TCONS_00052387|organism=Clytia hemisphaerica|type=transcript|length=1133bp|location=Sequence derived from alignment at scaffold_213:1076131..1077263- (Clytia hemisphaerica)
CGATCATATGGTCAAGTATATAATTTTTTGAGGTATTACGATCTTACGCA
TCTTTGAGTGGTGTATCAAAGCCCGAAAGGTAGGAAAAGACATGGCTGGC
CAAACTGGCAATTTCGAGTGAAATAAAACGAAAGTTAGCTCGAAAAGATA
TATGCCTGGCTTTTCTGCTTAAAAAAATGCAAAAGTATTTTTAAGTTTTT
AAAGATAAACATTATAGCATTCTTAAGTATCAAAGACTTTCTTTCGGACT
TGGTTTCGTCTTATGATGAAAATCTTTTCTTATTTCGAAAAGTTTTGTGA
TATCTGGCAAACAAATATAATTGATTTGCTAAAATTAATAAACCCAATTT
GTAAGGTGATTAAGAATATAAATTTTGATTTAAGTTATTTTTAGTTTGAC
ATAATTTTTGATTCATTTTAAATTCCATTTTTTTCTCATTAAGATAACAA
TATAACAATGACTTCACGACGACAATCACAAAATGGAGGCAAAATAAAAA
CTGGAGGCTATGAGTTTAAAGTGAAAGACCTCACCAATGAAATTTATCAA
TGTAAAATTTGTACACATTTAATCCGAACCTATATCGAGTTACCATGTAC
AGAATTTCATGGTTTTTGTAAGAATTGTTTGATTGATTTGGAACGTCAAA
CAATGGAACGAAATGACAATAGGTAACAGTTTCTTTTAGCAATTCTAGAC
TGCAGTAAATTTATTTTTGCTGATGATGTTTCTGGTTCACCACCTGGTTT
AATTTTCGAAGAAAGCGCATGCGTACTTTGTCGATTCAATTATTTTGTTA
AGCTAAATTTTTCGCCGACCCTAGGCTTACAAACATCTAGATAAATAGTA
GAAATATCAAAATCAAAATAGAAAAATCAAAAATCAAAAGTAATTTAAAG
TTTAATAGATATCCATGCAATAGCATTACTTACTCGAAGTATTTGCTACT
TATCTTGAATTTAGCCAATAAAAACAGTGGTAGCAGAGAGGGAGAGATTA
CTTTATAGCAACAGTAAACAAATGGTTATCTTTTACTTTAGTGGTGAGAG
AGTCAAATATTTCTGCAAGATATGCGGTGAAGAGTACGACCCAGCTAATG
TAAGTAAAATGTTTTTCTGTACTTCTGGGTAAC Coding sequence (CDS) from alignment at scaffold_213:1076131..1077263- >TCONS_00052387 ID=TCONS_00052387|Name=TCONS_00052387|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_213:1076131..1077263- (Clytia hemisphaerica)
TGGTGAGAGAGTCAAATATTTCTGCAAGATATGCGGTGAAGAGTACGACC
CAGCTAATGTAAGTAAAATGTTTTTCTGTACTTCTGGGTAAATGACTTCA
CGACGACAATCACAAAATGGAGGCAAAATAAAAACTGGAGGCTATGAGTT
TAAAGTGAAAGACCTCACCAATGAAATTTATCAATGTAAAATTTGTACAC
ATTTAATCCGAACCTATATCGAGTTACCATGTACAGAATTTCATGGTTTT
TGTAAGAATTGTTTGATTGATTTGGAACGTCAAACAATGGAACGAAATGA
CAATAGTGGTGAGAGAGTCAAATATTTCTGCAAGATATGCGGTGAAGAGT
ACGACCCAGCTAATGTAAGTAAAATGTTTTTCTGTACTTCTGGGTAAATG
ACTTCACGACGACAATCACAAAATGGAGGCAAAATAAAAACTGGAGGCTA
TGAGTTTAAAGTGAAAGACCTCACCAATGAAATTTATCAATGTAAAATTT
GTACACATTTAATCCGAACCTATATCGAGTTACCATGTACAGAATTTCAT
GGTTTTTGTAAGAATTGTTTGATTGATTTGGAACGTCAAACAATGGAACG
AAATGACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052387-exon-scaffold_213-1575043694:1077185..1077263 | TCONS_00052387-exon-scaffold_213-1575043694:1077185..1077263 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1575043694:1076592..1076820 | TCONS_00052387-exon-scaffold_213-1575043694:1076592..1076820 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1575043694:1076131..1076222 | TCONS_00052387-exon-scaffold_213-1575043694:1076131..1076222 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1510915933:1077185..1077263 | TCONS_00052387-exon-scaffold_213-1510915933:1077185..1077263 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1510915933:1076592..1076820 | TCONS_00052387-exon-scaffold_213-1510915933:1076592..1076820 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1510915933:1076131..1076222 | TCONS_00052387-exon-scaffold_213-1510915933:1076131..1076222 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1491911889:1077185..1077263 | TCONS_00052387-exon-scaffold_213-1491911889:1077185..1077263 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1491911889:1076592..1076820 | TCONS_00052387-exon-scaffold_213-1491911889:1076592..1076820 | Clytia hemisphaerica | exon |
| TCONS_00052387-exon-scaffold_213-1491911889:1076131..1076222 | TCONS_00052387-exon-scaffold_213-1491911889:1076131..1076222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1076131..1077263 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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