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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052386 ID=TCONS_00052386|Name=TCONS_00052386|organism=Clytia hemisphaerica|type=transcript|length=1516bp
AGGTTCACAACGATATTGAATGTCAGCTCATTCCTGTTAATTGTTCCAAT
GAAAATTGCAAGCAATCCATGCCGAAAAAAGAGATTGGTGACCATCAAAA
TAATAAATGTGTTTTTCGAAAAGTTCCGTGTTCCTTTCAAGAAGTTGGAT
GTTATGCTCAGGTTATATGCAAAGACTTGGGAGTTCACGAAGCAGATTCA
CACGCTGTGCATACGACTCTGTTgctcaaaaaaattcttgaagtaGAGCA
AGAAAGTACGGAGACTAAACGTGATtataaagcaatgaaaaatgagcTTC
AAGATTCAAAGAGAGATATAAACGAGGTACAAAAGGAGTTGGGTACAACT
CAAGCACGATACAACATcatgaagaaagaaaatgataaaCTCCGAGAAGA
ACTAAATACAGCTAAAACAGAGTTGGAAGAGTGTAAAAGAGAAAATGTTC
GTAAAACACTCAAACTTGAGCAAGATGTAAGTGAAATCCGAAAAAATCAG
GAGAACTTTGTAAAGGATCAAGTTGAAATCGCTAAAGTCGTTAATAAGAA
CGCCAATGTTTGTGTTGAATATCATACCCAGGATCTGAGCCTCATTCAGC
AAACATGTGCTATAGTTGGTAAAAGCTTGCCTCGAAAAACCTCATTCAAA
ACTCCTGAAGATATATTTGATGTGATATCAAGACCAAATCCAATTCAGCC
TAtagattttaaagaaaaacatttcGATTTTGAGGATATTAACCGAGTTT
TACAATATCCTTATCCAAACTATACCAACAATATTAGAAAAATGTGTAAC
TTAATGGAAAAAGGTAAAATCTATACTGATGTAAATGGCAATtccttttt
caaattatttttaccaCAAGACAATTATTTGTACGCTCATTACAAAGATT
ACTTAGATACAGTTCGGGAAAGTTCTTCAACAGAGTTTGAGAATAACAAT
ATGGTTTTATGGAAATTCGGTATTGGTCATTATAACTTATACATCAATGT
GGATGGGTTTGATTATGATAACTCGGTTATAGGACTCGTTCGAGTGCGTG
ATTTCTTCGAAAATTGGCCATTAACATTTAATGGTGAACGCAGTGCTATT
GACTGGAATAAATTCAGACTTGGTGGAAAAAATGTGATATTTTTCTTGAG
AAGAAAATGATTATCATTCATAAACTGATTAGAAGGGACTCTTTCAAGTT
TAAAATGacacttacacgtttttttaaaaagagcaattttataagaacac
aaggcttggAATTGGccaaattaagaaaaattctGAGCTTCAAATTTCAG
ATATTACTAAGAACGTAtcgattttaaaagattttaaaccgATCTTAATT
TTTCAAGTAAAATCTACAATTTTACACAATATTCCATTTTAAAATACTTA
TATAATTATGTAAATGtcgaaaaagtaatttttgtatttaaaaTTTAGTA
TAAATGTTAATTTTGtataattcaattttatttagttTATTTCAGTTTTC
TTGCTTTTTATTGAGc Run BLAST on NCBI protein sequence of TCONS_00052386-protein >TCONS_00052386-protein ID=TCONS_00052386-protein|Name=TCONS_00052386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
VHNDIECQLIPVNCSNENCKQSMPKKEIGDHQNNKCVFRKVPCSFQEVGC
YAQVICKDLGVHEADSHAVHTTLLLKKILEVEQESTETKRDYKAMKNELQ
DSKRDINEVQKELGTTQARYNIMKKENDKLREELNTAKTELEECKRENVR
KTLKLEQDVSEIRKNQENFVKDQVEIAKVVNKNANVCVEYHTQDLSLIQQ
TCAIVGKSLPRKTSFKTPEDIFDVISRPNPIQPIDFKEKHFDFEDINRVL
QYPYPNYTNNIRKMCNLMEKGKIYTDVNGNSFFKLFLPQDNYLYAHYKDY
LDTVRESSSTEFENNNMVLWKFGIGHYNLYINVDGFDYDNSVIGLVRVRD
FFENWPLTFNGERSAIDWNKFRLGGKNVIFFLRRK Run BLAST on NCBI transcript from alignment at scaffold_213:1069894..1073694- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052386 ID=TCONS_00052386|Name=TCONS_00052386|organism=Clytia hemisphaerica|type=transcript|length=3801bp|location=Sequence derived from alignment at scaffold_213:1069894..1073694- (Clytia hemisphaerica)
AGGTTCACAACGATATTGAATGTCAGCTCATTCCTGTTAATTGTTCCAAT
GAAAATTGCAAGCAATCCATGCCGAAAAAAGAGGTACTTAAGTCTCTTAA
TCCAAGGACCTGTTTAAATGACCAAGTAAATTTGTGTGAGCTTTTTTAAG
TTATCAGGAATTCCAGGCTATAATTATTACCGTATTACTTCGAATAAACG
ACTCCCTCCTTTTAAACGCCTTCTTGAATAAACTCCACTCCTTTGACGAA
AAATTTTCAGTAAACGCCTCCCCTCTTCACCCACGCTGAAGCTCTAAAGG
AGTGGGCCAATTTCCAATCGGAAAAGAATANACGCCTCCCCTCTTCACCC
ACGCTGAAGCTCTAAAGGAGTGGGCCAATTTCCAATCGGAGAAGAATGAT
ATTCGGCCTTTGATGTCCCGCATCCCCAGTCGGGCTCAACTACCGTAACG
CGTAGTAAAGCTGAAAATGACGGCTGGGTTATCAGGCCTCCCTTTGCAGA
ATCCTTGAAATGGTCAAGTCAAATTCCGTAAAATAAACCTTCAAGATCTT
GAAAATTTTCTTTTAGCTTTAGCATGTCGGATGAAAATTTCTGCATCTGG
GTGCCAGATAACCATAGAGTTTAAACGCCCCTCCTGAAAACCAAAAAAAA
GTAATAAACGCCTGGGGCGTTTTTTCAATAAAATTTGAAAAAATTGTATT
TCGGGGGTTCAAATTTTCGCGATTTTGCTAAAAAATCGCGAAAAACGCTA
GAATTGATTCCCGCGAAAATTAGTTCCAATAAGTTAAAAAATCGGAACAA
TCGAAGAACAATCCAATCCTCAGATTTTTAGAAAATTGACTGTACAACTA
ATGTGATTAATTGATTTCTTTGATGTTCNCAATCCTCAGATTTTTAGAAA
ATTGACTGTACAACTAATGTGACCAATTGATTTCTTTGATGTTTTAGATT
GGTGACCATCAAAATAATAAATGTGTTTTTCGAAAAGTTCCGTGTTCCTT
TCAAGAAGTTGGATGTTATGCTCAGGTAAACCAATAGATTTATAAAGCCC
GAAGGGCTAGATGTCGGGCTTAAGCCATCGCAGGAAATAAAAAGTGAATA
TCAATTGAAGGATAAGTTTTTTTGAAAAATGATGACGTCATGAATTTTTT
TAAGCCAAAATAAAATTTTGCTAATTTCTGCTGACGTCATTAGAAATTTC
TTTTCTTCAAAATTTGGAGATTGCCAATACCTTTTAGAGGCTCCTGTGGC
CTGAGTTTTGCTTCAAATTGCATGTCAATCGACGCATAATTTTACGCAGA
TTTCAAATATGCAATGAAAATTTTATTTTTTTCTTTATTGAAACAAAGAC
ACGTGTACACTACGAACATATATTACAAAACATTACTTAAACATAAAATA
TAGTCCCTCCCCCCGCTAGGAACTAACGTTATATCGCCAGAGGTACTAGA
CTATGTAAAAAATAAATAAATAAGTAAATAAATAAAAAAAAAAAGAAAAA
ATCTTGGAGAAGGAAGCTACAGTTGTTAGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGGTATTATGACTCCTCT
ATAAGTATACTCGTAGTTGGCAGTGAGCGTGTTAAGCATATAAAAAATAA
CTGTTGAATTAAGAAAATTTTGGGTACCAGAGGCCAAGTTTTCAGAGAAA
ATATTGTCGATATTTGTTCGATACTCGCGGTAGCAAGGTGTGCTATTTAA
CAAATTTAACAGACTATTTAAAAAAATATCTCCTTTTTATTCGTAGGTTA
TATGCAAAGACTTGGGAGTTCACGAAGCAGATTCACACGCTGTGCATACG
ACTCTGTTGCTCAAAAAAATTCTTGAAGTAGAGCAAGAAAGTACGGAGAC
TAAACGTGATTATAAAGCAATGAAAAATGAGCTTCAAGATTCAAAGAGAG
ATATAAACGAGGTACAAAAGGAGTTGGGTACAACTCAAGCACGATACAAC
ATCATGAAGAAAGAAAATGATAAACTCCGAGAAGAACTAAATACAGCTAA
AACAGAGTTGGAAGAGTGTAAAAGAGAAAATGTTCGTAAAACACTCAAAC
TTGAGCAAGATGTAAGTGAAATCCGAAAAAATCAGGAGAACTTTGTAAAG
GATCAAGTTGAAATCGCTAAAGTCGTTAATAAGAACGCCAATGTTTGTGT
TGAATATCATACCCAGGATCTGAGCCTCATTCAGCAAACATGTGCTATAG
TTGGTAAAAGCTTGCCTCGAAAAACCTCATTCAAAACTCCTGAAGATATA
TTTGATGTGATATCAAGACCAAATCCAATTCAGCCTATAGATTTTAAAGA
AAAACATTTCGATTTTGAGGATATTAACCGAGTTTTACAATATCCTTATC
CAAACTATACCAACAATATTAGAAAAATGTGTAACTTAATGGAAAAAGGT
AAAATCTATACTGATGTAAATGGCAATTCCTTTTTCAAATTATTTTTACC
ACAAGACAATTATTTGTACGCTCATTACAAAGATTACTTAGATACAGTTC
GGGAAAGTTCTTCAACAGAGTTTGAGAATAACAATATGGTTTTATGGAAA
TTCGGTATTGGTCATTATAACTTATACATCAATGTGGATGGGTTTGATTA
TGATAACTCGGTTATAGGACTCGTTCGAGTGCGTGATTTCTTCGAAAATT
GGCCATTAACATTTAATGGTGAACGCAGTGCTATTGACTGGAATAAATTC
AGACTTGGTGGAAAAAATGTGATATTTTTCTTGAGAAGAAAATGATTATC
ATTCATAAACTGATTAGAAGGGACTCTTTCAAGTTTAAAATGACACTTAC
ACGTTTTTTTAAAAAGAGCAATTTTATAAGAACACAAGGCTTGGAATTGG
CCAAATTAAGAAAAATTCTGAGCTTCAAATTTCAGATATTACTAAGAACG
TATCGATTTTAAAAGATTTTAAACCGATCTTAATTTTTCAAGTAAAATCT
ACAATTTTACACAATATTCCATTTTAAAATACTTATATAATTATGTAAAT
GTCGAAAAAGTAATTTTTGTATTTAAAATTTAGTATAAATGTTAATTTTG
TATAATTCAATTTTATTTAGTTTATTTCAGTTTTCTTGCTTTTTATTGAG
C Coding sequence (CDS) from alignment at scaffold_213:1069894..1073694- >TCONS_00052386 ID=TCONS_00052386|Name=TCONS_00052386|organism=Clytia hemisphaerica|type=CDS|length=3474bp|location=Sequence derived from alignment at scaffold_213:1069894..1073694- (Clytia hemisphaerica)
GTTATATGCAAAGACTTGGGAGTTCACGAAGCAGATTCACACGCTGTGCA
TACGACTCTGTTGCTCAAAAAAATTCTTGAAGTAGAGCAAGAAAGTACGG
AGACTAAACGTGATTATAAAGCAATGAAAAATGAGCTTCAAGATTCAAAG
AGAGATATAAACGAGGTACAAAAGGAGTTGGGTACAACTCAAGCACGATA
CAACATCATGAAGAAAGAAAATGATAAACTCCGAGAAGAACTAAATACAG
CTAAAACAGAGTTGGAAGAGTGTAAAAGAGAAAATGTTCGTAAAACACTC
AAACTTGAGCAAGATGTAAGTGAAATCCGAAAAAATCAGGAGAACTTTGT
AAAGGATCAAGTTGAAATCGCTAAAGTCGTTAATAAGAACGCCAATGTTT
GTGTTGAATATCATACCCAGGATCTGAGCCTCATTCAGCAAACATGTGCT
ATAGTTGGTAAAAGCTTGCCTCGAAAAACCTCATTCAAAACTCCTGAAGA
TATATTTGATGTGATATCAAGACCAAATCCAATTCAGCCTATAGATTTTA
AAGAAAAACATTTCGATTTTGAGGATATTAACCGAGTTTTACAATATCCT
TATCCAAACTATACCAACAATATTAGAAAAATGTGTAACTTAATGGAAAA
AGGTAAAATCTATACTGATGTAAATGGCAATTCCTTTTTCAAATTATTTT
TACCACAAGACAATTATTTGTACGCTCATTACAAAGATTACTTAGATACA
GTTCGGGAAAGTTCTTCAACAGAGTTTGAGAATAACAATATGGTTTTATG
GAAATTCGGTATTGGTCATTATAACTTATACATCAATGTGGATGGGTTTG
ATTATGATAACTCGGTTATAGGACTCGTTCGAGTGCGTGATTTCTTCGAA
AATTGGCCATTAACATTTAATGGTGAACGCAGTGCTATTGACTGGAATAA
ATTCAGACTTGGTGGAAAAAATGTGATATTTTTCTTGAGAAGAAAATGAA
TTGGTGACCATCAAAATAATAAATGTGTTTTTCGAAAAGTTCCGTGTTCC
TTTCAAGAAGTTGGATGTTATGCTCAGGTTCACAACGATATTGAATGTCA
GCTCATTCCTGTTAATTGTTCCAATGAAAATTGCAAGCAATCCATGCCGA
AAAAAGAGGTTATATGCAAAGACTTGGGAGTTCACGAAGCAGATTCACAC
GCTGTGCATACGACTCTGTTGCTCAAAAAAATTCTTGAAGTAGAGCAAGA
AAGTACGGAGACTAAACGTGATTATAAAGCAATGAAAAATGAGCTTCAAG
ATTCAAAGAGAGATATAAACGAGGTACAAAAGGAGTTGGGTACAACTCAA
GCACGATACAACATCATGAAGAAAGAAAATGATAAACTCCGAGAAGAACT
AAATACAGCTAAAACAGAGTTGGAAGAGTGTAAAAGAGAAAATGTTCGTA
AAACACTCAAACTTGAGCAAGATGTAAGTGAAATCCGAAAAAATCAGGAG
AACTTTGTAAAGGATCAAGTTGAAATCGCTAAAGTCGTTAATAAGAACGC
CAATGTTTGTGTTGAATATCATACCCAGGATCTGAGCCTCATTCAGCAAA
CATGTGCTATAGTTGGTAAAAGCTTGCCTCGAAAAACCTCATTCAAAACT
CCTGAAGATATATTTGATGTGATATCAAGACCAAATCCAATTCAGCCTAT
AGATTTTAAAGAAAAACATTTCGATTTTGAGGATATTAACCGAGTTTTAC
AATATCCTTATCCAAACTATACCAACAATATTAGAAAAATGTGTAACTTA
ATGGAAAAAGGTAAAATCTATACTGATGTAAATGGCAATTCCTTTTTCAA
ATTATTTTTACCACAAGACAATTATTTGTACGCTCATTACAAAGATTACT
TAGATACAGTTCGGGAAAGTTCTTCAACAGAGTTTGAGAATAACAATATG
GTTTTATGGAAATTCGGTATTGGTCATTATAACTTATACATCAATGTGGA
TGGGTTTGATTATGATAACTCGGTTATAGGACTCGTTCGAGTGCGTGATT
TCTTCGAAAATTGGCCATTAACATTTAATGGTGAACGCAGTGCTATTGAC
TGGAATAAATTCAGACTTGGTGGAAAAAATGTGATATTTTTCTTGAGAAG
AAAATGAATTGGTGACCATCAAAATAATAAATGTGTTTTTCGAAAAGTTC
CGTGTTCCTTTCAAGAAGTTGGATGTTATGCTCAGGTTCACAACGATATT
GAATGTCAGCTCATTCCTGTTAATTGTTCCAATGAAAATTGCAAGCAATC
CATGCCGAAAAAAGAGGTTATATGCAAAGACTTGGGAGTTCACGAAGCAG
ATTCACACGCTGTGCATACGACTCTGTTGCTCAAAAAAATTCTTGAAGTA
GAGCAAGAAAGTACGGAGACTAAACGTGATTATAAAGCAATGAAAAATGA
GCTTCAAGATTCAAAGAGAGATATAAACGAGGTACAAAAGGAGTTGGGTA
CAACTCAAGCACGATACAACATCATGAAGAAAGAAAATGATAAACTCCGA
GAAGAACTAAATACAGCTAAAACAGAGTTGGAAGAGTGTAAAAGAGAAAA
TGTTCGTAAAACACTCAAACTTGAGCAAGATGTAAGTGAAATCCGAAAAA
ATCAGGAGAACTTTGTAAAGGATCAAGTTGAAATCGCTAAAGTCGTTAAT
AAGAACGCCAATGTTTGTGTTGAATATCATACCCAGGATCTGAGCCTCAT
TCAGCAAACATGTGCTATAGTTGGTAAAAGCTTGCCTCGAAAAACCTCAT
TCAAAACTCCTGAAGATATATTTGATGTGATATCAAGACCAAATCCAATT
CAGCCTATAGATTTTAAAGAAAAACATTTCGATTTTGAGGATATTAACCG
AGTTTTACAATATCCTTATCCAAACTATACCAACAATATTAGAAAAATGT
GTAACTTAATGGAAAAAGGTAAAATCTATACTGATGTAAATGGCAATTCC
TTTTTCAAATTATTTTTACCACAAGACAATTATTTGTACGCTCATTACAA
AGATTACTTAGATACAGTTCGGGAAAGTTCTTCAACAGAGTTTGAGAATA
ACAATATGGTTTTATGGAAATTCGGTATTGGTCATTATAACTTATACATC
AATGTGGATGGGTTTGATTATGATAACTCGGTTATAGGACTCGTTCGAGT
GCGTGATTTCTTCGAAAATTGGCCATTAACATTTAATGGTGAACGCAGTG
CTATTGACTGGAATAAATTCAGACTTGGTGGAAAAAATGTGATATTTTTC
TTGAGAAGAAAATGAATTGGTGACCATCAAAATAATAAATGTGTTTTTCG
AAAAGTTCCGTGTTCCTTTCAAGAAGTTGGATGTTATGCTCAGGTTCACA
ACGATATTGAATGTCAGCTCATTCCTGTTAATTGTTCCAATGAAAATTGC
AAGCAATCCATGCCGAAAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052386-exon-scaffold_213-1575043694:1073612..1073694 | TCONS_00052386-exon-scaffold_213-1575043694:1073612..1073694 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1575043694:1072670..1072747 | TCONS_00052386-exon-scaffold_213-1575043694:1072670..1072747 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1575043694:1069894..1071248 | TCONS_00052386-exon-scaffold_213-1575043694:1069894..1071248 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1510915933:1073612..1073694 | TCONS_00052386-exon-scaffold_213-1510915933:1073612..1073694 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1510915933:1072670..1072747 | TCONS_00052386-exon-scaffold_213-1510915933:1072670..1072747 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1510915933:1069894..1071248 | TCONS_00052386-exon-scaffold_213-1510915933:1069894..1071248 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1491911889:1073612..1073694 | TCONS_00052386-exon-scaffold_213-1491911889:1073612..1073694 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1491911889:1072670..1072747 | TCONS_00052386-exon-scaffold_213-1491911889:1072670..1072747 | Clytia hemisphaerica | exon |
| TCONS_00052386-exon-scaffold_213-1491911889:1069894..1071248 | TCONS_00052386-exon-scaffold_213-1491911889:1069894..1071248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1069894..1073694 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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