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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052385 ID=TCONS_00052385|Name=TCONS_00052385|organism=Clytia hemisphaerica|type=transcript|length=1647bp
GATTCTTTGAGCATCACAGATatataatattccactccataatatctttt
taacgagcttTAGCTCTAACGATGTCAAACCGGCAATTAAATTTAGAAGA
ATTTctgtatttaaaaaacaaattgtaaaagATACAAAATTTGAATGATA
GATatttaattataaaaaaaatttctacatgaaaaaaatgaaaatgaaaa
taaaaaaataaaatttcaaataaattcagattgtttttacaaaaaataat
atttatgaTTTTATACAACAATAAAATAAAGGTTTAAGGTTTGCCCAAGA
TTACTGTAAAACTAAATGCTatgtttatttataagcattacaatttaagc
TCAGATATGACAAAAATTTAAGCATGTGTTGAGCATTACcctgagcctac
gaaaaatgattttggctgattttggctgtgattttacggattttttagaa
tttttgcttTGGATAAAAGCATCCTTATAAGCATCTTTCAGCCTTGTCAA
GCcctcgacctaagcatctccaAACCTGGTTTCGAATATTtagatgctta
taaaaaacatgtacagttgacgctctctaattcgatcttcaaggggaatt
ggattttcatcgaataagggagtgtcgtttatgagagcttcttgttgacg
gcgactttaaatttcatcggaTAATGGAGcgtgtatcgaatagtagaacg
tcgagttagagagcgtcaactgtactaaTAAAAAGACTCCGTAGAAAAAA
TATTGGCGTAAACGTATTTTCTTTTGGATAAGATGACAAAAAGTGCCCTG
GGTACCAGAGCTCAActtattcgagctgtgatagTCACGGTAGACAATAA
TGTAATTTCTAGAAGCTGTAAATATATTAGAAGGTGTAACGTAGGCCTTT
AAGATTTTGATGGATTTCACTGGTCAATGAACATTCGGCTTGATTTCTAT
AACAATGATCATCATTTGAAACAACAGTCAGGGAGAACTTTGGTTATATT
GAGCAATCACAACGTAGAACGCGTTTCAGTTTCAGATAGGTCTCTCCAAC
AATAAGATCgaaattttgtaatattttcgcatattttcCTATCATATCAG
CTTCCAACCAAAATACAACTTGATGATCCTCTAAACCAACCGGATCTGAG
GTGGAGAGCTTCAAAATCCATGACGGAGAGTCCTCGTTTCCTTATAAGGA
GTATAGGGATAAAAAGAAACCCTCTCCATCAAAAATATAACCCTTAGATC
CATAACTTACCATTAGCTTTTGTTGTCGATGCCAGTAGaaatgcaaaatg
tcattactCGATTTACCAATCACATCTTAGAATTTGTTGTCAGTTTCCAG
TGAACATACAAAATGATACCAATATCTCAACCAATCATTTTATGCTATCT
CTTGTTAGAAGCCAATGGAAATACATACAAGCTTTACTCTTAACCAATCA
CATCATAGTATTTGTCGTCAACGGCCAATGAAATTTCACAAATCATCTAT
AATTCTTCATAAATTTCTTCTCCTGGTCCAGCTTCTACAAAAAAAGTATG
CGATTCAAGGATTTATTATTTGCCTATCTCACATTAAACTTTACACCCTT
GTCTCAGTGTACCCATCGATTGGCCGGGTTAACTTTATTAATGCAAT Run BLAST on NCBI transcript from alignment at scaffold_213:1066532..1068927- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052385 ID=TCONS_00052385|Name=TCONS_00052385|organism=Clytia hemisphaerica|type=transcript|length=2396bp|location=Sequence derived from alignment at scaffold_213:1066532..1068927- (Clytia hemisphaerica)
GATTCTTTGAGCATCACAGATATATAATATTCCACTCCATAATATCTTTT
TAACGAGCTTTAGCTCTAACGATGTCAAACCGGCAATTAAATTTAGAAGA
ATTTCTGTATTTAAAAAACAAATTGTAAAAGATACAAAATTTGAATGATA
GATATTTAATTATAAAAAAAATTTCTACATGAAAAAAATGAAAATGAAAA
TAAAAAAATAAAATTTCAAATAAATTCAGATTGTTTTTACAAAAAATAAT
ATTTATGATTTTATACAACAATAAAATAAAGGTTTAAGGTTTGCCCAAGA
TTACTGTAAAACTAAATGCTATGTTTATTTATAAGCATTACAATTATAAT
CGCACGATGGGTTATTTTTTCTTATTTGGCACACCCTCAAAGAGAGCAAT
TAATCGTTAATTGCATCCTGTAGAGAGCAATAAATCGTTAATCACNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATAAAAGAAAGACACAGAGAGAAGAGAAAAATATAAAA
CTCTCAGTGTAATTTCTGTAATTTACTTTCCTAACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
TTCCTCGTCCTTTCGGACTCGGAAAATTAATAACAAAAAAATCACTCGTG
CAATTATTCTCGAATTGCACTCGTTATCATGTGATTACATATACTAAGCT
CAGATATGACAAAAATTTAAGCATGTGTTGAGCATTACCCTGAGCCTACG
AAAAATGATTTTGGCTGATTTTGGCTGTGATTTTACGGATTTTTTAGAAT
TTTTGCTTTGGATAAAAGCATCCTTATAAGCATCTTTCAGCCTTGTCAAG
CCCTCGACCTAAGCATCTCCAAACCTGGTTTCGAATATTTAGATGCTTAT
AAAAAACATGTACAGTTGACGCTCTCTAATTCGATCTTCAAGGGGAATTG
GATTTTCATCGAATAAGGGAGTGTCGTTTATGAGAGCTTCTTGTTGACGG
CGACTTTAAATTTCATCGGATAATGGAGCGTGTATCGAATAGTAGAACGT
CGAGTTAGAGAGCGTCAACTGTACTAATAAAAAGACTCCGTAGAAAAAAT
ATTGGCGTAAACGTATTTTCTTTTGGATAAGATGACAAAAAGTGCCCTGG
GTACCAGAGCTCAACTTATTCGAGCTGTGATAGTCACGGTAGACAATAAT
GTAATTTCTAGAAGCTGTAAATATATTAGAAGGTGTAACGTAGGCCTTTA
AGATTTTGATGGATTTCACTGGTCAATGAACATTCGGCTTGATTTCTATA
ACAATGATCATCATTTGAAACAACAGTCAGGGAGAACTTTGGTTATATTG
AGCAATCACAACGTAGAACGCGTTTCAGTTTCAGATAGGTCTCTCCAACA
ATAAGATCGAAATTTTGTAATATTTTCGCATATTTTCCTATCATATCAGC
TTCCAACCAAAATACAACTTGATGATCCTCTAAACCAACCGGATCTGAGG
TGGAGAGCTTCAAAATCCATGACGGAGAGTCCTCGTTTCCTTATAAGGAG
TATAGGGATAAAAAGAAACCCTCTCCATCAAAAATATAACCCTTAGATCC
ATAACTTACCATTAGCTTTTGTTGTCGATGCCAGTAGAAATGCAAAATGT
CATTACTCGATTTACCAATCACATCTTAGAATTTGTTGTCAGTTTCCAGT
GAACATACAAAATGATACCAATATCTCAACCAATCATTTTATGCTATCTC
TTGTTAGAAGCCAATGGAAATACATACAAGCTTTACTCTTAACCAATCAC
ATCATAGTATTTGTCGTCAACGGCCAATGAAATTTCACAAATCATCTATA
ATTCTTCATAAATTTCTTCTCCTGGTCCAGCTTCTACAAAAAAAGTATGC
GATTCAAGGATTTATTATTTGCCTATCTCACATTAAACTTTACACCCTTG
TCTCAGTGTACCCATCGATTGGCCGGGTTAACTTTATTAATGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052385-exon-scaffold_213-1575043694:1068583..1068927 | TCONS_00052385-exon-scaffold_213-1575043694:1068583..1068927 | Clytia hemisphaerica | exon |
| TCONS_00052385-exon-scaffold_213-1575043694:1066532..1067833 | TCONS_00052385-exon-scaffold_213-1575043694:1066532..1067833 | Clytia hemisphaerica | exon |
| TCONS_00052385-exon-scaffold_213-1510915933:1068583..1068927 | TCONS_00052385-exon-scaffold_213-1510915933:1068583..1068927 | Clytia hemisphaerica | exon |
| TCONS_00052385-exon-scaffold_213-1510915933:1066532..1067833 | TCONS_00052385-exon-scaffold_213-1510915933:1066532..1067833 | Clytia hemisphaerica | exon |
| TCONS_00052385-exon-scaffold_213-1491911889:1068583..1068927 | TCONS_00052385-exon-scaffold_213-1491911889:1068583..1068927 | Clytia hemisphaerica | exon |
| TCONS_00052385-exon-scaffold_213-1491911889:1066532..1067833 | TCONS_00052385-exon-scaffold_213-1491911889:1066532..1067833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1066532..1068927 - |
Blast
The following BLAST results are available for this feature:
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