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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052370 ID=TCONS_00052370|Name=TCONS_00052370|organism=Clytia hemisphaerica|type=transcript|length=2782bp
TAAGAAGATTCTTAATATGCTAAGACTCATTTTTAAATTGATCTTTCTGG
TGTCACAACGACGAATGATAACGAATAAATCGAAAGTAATCATCATCGAC
TCTTCAGCCTTAAATTTAAATTACCAGCTAGCTCAACAACTATGACCTAA
ATAGAAAAACAACTTGAACACAATGGTTTTAGAGTTCtataaaatgcatt
aaaagTAGGACTTAAAAAAAGATGTATTCTTTGGCATAATTTACGTTGAA
ATTATttaggaaattatttttttctgtgatttgtTTAATTATATTAGGAC
AAGATGATGCAATCAGCCTATCATTCTTCTATTTTGTAGGAACACGTGCA
TCACAACAACTTTGAGCACGAGTTACAAAACCTTGCATTACGTCATTGGC
GGTTACGTCAATTAGATGATCTCCATTCCTACGTCTCATACACCTCACAC
ATGCATTTACCATGGCACCACCGCCCTTCCAGGGGCATCCCTGTAGAAAT
CCAACGCCATGAGTTTGTACCGCCCTTGTTCCGAGAAGAACGTGAGGTGG
TGGAACAGCAGAATCCATCACAAAACAACGAACCTAAAGGACTATCGCAA
CGAGAATTGGACAAGCTTCCTTCGTATCATGTTACAAAGAAAACCTTAGA
AGAGTTCAATGAAAATGACCGTTGTGTAGTGTGTATGTCTGAATATGAAG
TGGAAGAGAAGTTACGCGTGTTACCGTGCGCTCACGAATTTCACGCACCT
TGTGTCGATAAATGGTTGATGACGAACCCAACGTGTCCGATTTGTCGCGC
TTCAGTTTGAATGAGAACACACCTGTACATCATTGGAATGGTGTTATTCT
TTAACTGGTGGTGATTCAAAGACAAAGAACAATTTCAATGAGAGATTCTC
CAAAGAATATGAATCATCTGAATTCAGTCATTGTGTTTTTAAAAGCAAGA
GGGTTAAGCGAATAGTGTTAAacctctgttttgtttttgttcagttcttt
ttcggattttcttagttcgatcagttcgatcgTTCAGCGTGTTAGAAAGA
GGATTTTTCATATGCGAGTTACGAATTACGAGTTatgagttacgagttgc
atttagaaccacgagttgcgagttactttttacgaTCCAACTCGCAACTC
AtggttctaaatgcaactcgtaactcgcaactcgcatctTATCGTATCAC
GTTAGAAATATTCGAAAggatttttgagtattttctatgtttttgaagCC
ATTTTCACGACTTTCCTTTCATAAGGTCGCGGTGTTTAATCATCATCTGT
AAATTTACTGTCActtattttttaagaattccGTGAAGATATCCTATTTG
AATTTAAATAGTTAGACAAGTGAGAAATTCAGTTtcttcaatcaattttt
ttttcaagaaatttaacATAAGATTTATTTTGTTGTAAAGATTTATTACA
TAAAGAccgtttattttattatttttttgttttttacacttttttatatc
aaATGTATTGTTCGTTTGTTGATTTCTCAGTCAAATGGTGTATTCTGTTG
CCTCTGAAACGTGTTATGTATTTTAACGTGTTATGTATATAAACATATTA
TGTATTACATATTACGTATCGAACGTATTACCATAGTACAGCTTCTATGA
GAATTTTCGTAAATCGAAATCTTTTCAATTTTATGCTTTCGTGAGTGTTA
AACTACACTACAATGAACCTGCgatagtaatattttttctgGATTAAAGC
ATGAAGCAAATCATGTCcttagagaaaaaaagaagttcTACAGATCAGAG
AGACCTTAAAAAAAAGCTATCAATTGTATTCGCGTTTGTTACTTCAACAT
TTATCATTGTATTGTATTATACCTCGttaacaaagtcaattttttacggg
taaaaataaataaatgtgaATGACATCTTTGCTTTTTGCAAGGATCTATA
AGGCAAGAAAATCAATTGCTTGATCATTTTACGAACAGAAGTTCGGATGG
ATCTTGTGTGTGCTATTTTACAATGttagctacacgttttttcttttatt
agaacccagtttataagaacattgaggctgaaattcgtcgaaaatttAAG
AACGTCGTAAGAACGTGCCCAGactcagtttgaaaaaagatgacaagaaa
ctataattttttcctctttgtaagcagttttaaccaaattttaccaattt
taagtgctctttattttgcatgatattgtcgatttagagtagtctgaaaa
attaagatcgcatttaagaacattttaggctgaaaattgctaaaaaaata
agcacatccaggctcagccaaaatttagatgttcttataaaaaaacgtgt
agctgtGTAGACATAGTCAtgtatttcaattttcatgctCGAGACGAAAT
TTAAGCTATAGTCATCGTTGCTATAATTAAGTAAAAAATGGTTTAGTGCA
ACCCTTAGGAGTTTTGAGTATTTGTCATTCAACTTGTATTAGTGTATAGT
GTATAGAAAGTTCattcattttcataaaaaaaaacttccataaagggaca
aaaataatttttaacaaCCGTAATTTAAATATTATTGTAATTTCGTAATG
TCATAAATATATCAAAAGAGTTGTATACCTCTCGTGCAATAAACACCAAA
TGTCTTATTCTATGCGAACCCATCGTCAATCTGatgcttaaagggacata
aaagtactgacgaaatttgtaaacaaaccgtatgcagcgcgatacaaaat
caaaacaaatgtcacatgtcaaaataaaaaaN Run BLAST on NCBI protein sequence of TCONS_00052370-protein >TCONS_00052370-protein ID=TCONS_00052370-protein|Name=TCONS_00052370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MHLPWHHRPSRGIPVEIQRHEFVPPLFREEREVVEQQNPSQNNEPKGLSQ
RELDKLPSYHVTKKTLEEFNENDRCVVCMSEYEVEEKLRVLPCAHEFHAP
CVDKWLMTNPTCPICRASV Run BLAST on NCBI transcript from alignment at scaffold_213:864602..869097- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052370 ID=TCONS_00052370|Name=TCONS_00052370|organism=Clytia hemisphaerica|type=transcript|length=4496bp|location=Sequence derived from alignment at scaffold_213:864602..869097- (Clytia hemisphaerica)
TAAGAAGATTCTTAATATGCTAAGACTCATTTTTAAATTGATCTTTCTGG
TGTCACAACGACGAATGATAACGAATAAATCGAAAGTAATCATCATCGAC
TCTTCAGCCTTAAATTTAAATTACCAGCTAGCTCAACAACTATGACCTAA
ATAGAAAAACAACTTGAACACAATGGTTTTAGAGTTCTATAAAATGCATT
AAAAGTAGGACTTAAAAAAAGATGTATTCTTTGGCATAATTTACGTTGAA
ATTATTTAGGAAATTATTTTTTTCTGTGATTTGTTTAATTATATTAGGAC
AAGATGATGCAATCAGCCTATCATTCTTCTATTTTGTAGGAACACGTGCA
TCACAACAACTTTGAGCACGAGTTACAAAACCTTGCATTACGTCATTGGC
GGTTACGTCAATTAGATGATCTCCATTCCTACGTCTCATACACCTCACAC
ATGCATTTACCATGGCACCACCGCCCTTCCAGGGGCATCCCTGTAGAAAT
CCAACGCCATGAGTTTGTACCGCCCTTGTTCCGAGAAGAACGTGAGGTGG
TGGAACAGCAGAATCCATCACAAAACAACGAACCTAAAGGACTATCGCAA
CGAGAATTGGACAAGCTTCCTTCGTATCATGTTACAAAGAAAACCTTAGA
AGAGTTCAATGAAAAGTAAGGATTCCGTTCTAATCACAGATATCTTATAT
AAAACACTAGACAGAGCCACTCTGTATTTCCCAAGTAACGACAGGTGAAG
CAAAATAATGCATCATCTTTACTGAAATTAAGTCGTAGTTGGTCACAGTA
GAAACTTGGTTTTCACTGTTGAAGTTTTTATGACGCTTTAAAATTTCAAG
GATCGCGCAAGCTAAATTGTGACGTCACATCATTCAAAATAGCGAATTAT
TTTGCTTCAGCTAGGGATAGAGCCATCTAGTGTTTTACATAAGATACCTG
TGGCTCTATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTAATCACAGATATCTTATATAAAACACTAGACAGAGCCA
CTCTGTATTTCCCAAGTAACGACAGGTGAAGCAAAATAATGCATCATCTT
TATTGAAATTAAGTCGTAGTTGGTCACAGTAGAAAATTTGGTTTTCACTG
TTGAAGTTTTTATGACGCTTTAAAATTTCAAGGATCGCGCAAGCTAAATT
GGGACGTCACATCATTCAAAATAGCGAATTATTTTGCTTCAGCTAGGGAT
AGAGCCATCTAGTGTTTTACATAAGATACCTGTGGCTCTATTCAGGGGCA
CCATTTTATCAGAAATATGAACGGCTGAGCTATTTTGGATCCAAGGCACT
TCTCAGTCTTCTATGATACCATGAACTTTCAAACCAGTCAATACTTATTG
TTCATGGAGAGAAAGGGTCTAAGTAAGTAAGTATATACATCTGGTGGCTG
TCGGGAGTGTAGGAGTCTATCCCCTTTTCTATTTGCGCTAGACCTGGGAG
ATCGAATGCTGAGGTGGAGCGCCACACCTGCTCTCAGCTCCCAGTAACTT
ACCGCCTAGATCAGATTACCCAAAGCTACTCATCCGCTGATTGGCGGTGA
CCGGGGATCGAACCCACAAACCTTAGATTTTAAGACGAATGCTCTACCGA
CTGAGCTACCCGGCCACTGAGAAAGGGTGACTATTGACAATTTGTACCCA
AATTTGCTAAACACAGGTAAATATTGTCTAATTTTTAAACGAATTGAACC
AATGTGAATGTAACCTTAGAAATTACTTTTATATTTGTTTAGTGACCGTT
GTGTAGTGTGTATGTCTGAATATGAAGTGGAAGAGAAGTTACGCGTGTTA
CCGTGCGCTCACGAATTTCACGCACCTTGTGTCGATAAATGGTTGATGGT
AAGAATTCGTTGTTTTGCAACTACAGTCGGTACTCTCTTATTCGACGTCC
TAATATTCAATACGCTCCCTTATTCGATTAAATTCTAATTTTCCTCAAAA
GTCGAATTAGAGAGCGCCATCTACTATTTTCTTACCATGGGGTTAGCTTT
ATTGTTATCCTTAGAAAGGTTGGGTTGTCACTTGTGTACTGAAATAGACA
ACTATGTAAACTATACCAAACTTCAAACTTGAGATCCACAAACTTGTTAT
ACTTTACCGATTTGCAAACTTGATGAAGATAGATAGTTCTTTTAAATGCT
ATTCCATAAAGATTGTCCGTTCTTTTGAAATGAGATACTGTATTGTTAAA
ATTAATACATACCTTGTTGGTATGATCATTTTGTGTGGATTAATTTAAAA
GCTTCTAAACACACATAAGCAAAAAGAATATGACCAAATAAAGAAGATAC
TGATATTCTGGTTATTAGAGTTTCAGTAAGAAAAAAATGACCACCATAAT
GTATTCAATGTAACATATATCTTGTTTATCTTTAGACGAACCCAACGTGT
CCGATTTGTCGCGCTTCAGTTTGAATGAGAACACACCTGTACATCATTGG
AATGGTGTTATTCTTTAACTGGTGGTGATTCAAAGACAAAGAACAATTTC
AATGAGAGATTCTCCAAAGAATATGAATCATCTGAATTCAGTCATTGTGT
TTTTAAAAGCAAGAGGGTTAAGCGAATAGTGTTAAACCTCTGTTTTGTTT
TTGTTCAGTTCTTTTTCGGATTTTCTTAGTTCGATCAGTTCGATCGTTCA
GCGTGTTAGAAAGAGGATTTTTCATATGCGAGTTACGAATTACGAGTTAT
GAGTTACGAGTTGCATTTAGAACCACGAGTTGCGAGTTACTTTTTACGAT
CCAACTCGCAACTCATGGTTCTAAATGCAACTCGTAACTCGCAACTCGCA
TCTTATCGTATCACGTTAGAAATATTCGAAAGGATTTTTGAGTATTTTCT
ATGTTTTTGAAGCCATTTTCACGACTTTCCTTTCATAAGGTCGCGGTGTT
TAATCATCATCTGTAAATTTACTGTCACTTATTTTTTAAGAATTCCGTGA
AGATATCCTATTTGAATTTAAATAGTTAGACAAGTGAGAAATTCAGTTTC
TTCAATCAATTTTTTTTTCAAGAAATTTAACATAAGATTTATTTTGTTGT
AAAGATTTATTACATAAAGACCGTTTATTTTATTATTTTTTTGTTTTTTA
CACTTTTTTATATCAAATGTATTGTTCGTTTGTTGATTTCTCAGTCAAAT
GGTGTATTCTGTTGCCTCTGAAACGTGTTATGTATTTTAACGTGTTATGT
ATATAAACATATTATGTATTACATATTACGTATCGAACGTATTACCATAG
TACAGCTTCTATGAGAATTTTCGTAAATCGAAATCTTTTCAATTTTATGC
TTTCGTGAGTGTTAAACTACACTACAATGAACCTGCGATAGTAATATTTT
TTCTGGATTAAAGCATGAAGCAAATCATGTCCTTAGAGAAAAAAAGAAGT
TCTACAGATCAGAGAGACCTTAAAAAAAAGCTATCAATTGTATTCGCGTT
TGTTACTTCAACATTTATCATTGTATTGTATTATACCTCGTTAACAAAGT
CAATTTTTTACGGGTAAAAATAAATAAATGTGAATGACATCTTTGCTTTT
TGCAAGGATCTATAAGGCAAGAAAATCAATTGCTTGATCATTTTACGAAC
AGAAGTTCGGATGGATCTTGTGTGTGCTATTTTACAATGTTAGCTACACG
TTTTTTCTTTTATTAGAACCCAGTTTATAAGAACATTGAGGCTGAAATTC
GTCGAAAATTTAAGAACGTCGTAAGAACGTGCCCAGACTCAGTTTGAAAA
AAGATGACAAGAAACTATAATTTTTTCCTCTTTGTAAGCAGTTTTAACCA
AATTTTACCAATTTTAAGTGCTCTTTATTTTGCATGATATTGTCGATTTA
GAGTAGTCTGAAAAATTAAGATCGCATTTAAGAACATTTTAGGCTGAAAA
TTGCTAAAAAAATAAGCACATCCAGGCTCAGCCAAAATTTAGATGTTCTT
ATAAAAAAACGTGTAGCTGTGTAGACATAGTCATGTATTTCAATTTTCAT
GCTCGAGACGAAATTTAAGCTATAGTCATCGTTGCTATAATTAAGTAAAA
AATGGTTTAGTGCAACCCTTAGGAGTTTTGAGTATTTGTCATTCAACTTG
TATTAGTGTATAGTGTATAGAAAGTTCATTCATTTTCATAAAAAAAAACT
TCCATAAAGGGACAAAAATAATTTTTAACAACCGTAATTTAAATATTATT
GTAATTTCGTAATGTCATAAATATATCAAAAGAGTTGTATACCTCTCGTG
CAATAAACACCAAATGTCTTATTCTATGCGAACCCATCGTCAATCTGATG
CTTAAAGGGACATAAAAGTACTGACGAAATTTGTAAACAAACCGTATGCA
GCGCGATACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAAN Coding sequence (CDS) from alignment at scaffold_213:864602..869097- >TCONS_00052370 ID=TCONS_00052370|Name=TCONS_00052370|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_213:864602..869097- (Clytia hemisphaerica)
ACGAACCCAACGTGTCCGATTTGTCGCGCTTCAGTTTGATGACCGTTGTG
TAGTGTGTATGTCTGAATATGAAGTGGAAGAGAAGTTACGCGTGTTACCG
TGCGCTCACGAATTTCACGCACCTTGTGTCGATAAATGGTTGATGATGCA
TTTACCATGGCACCACCGCCCTTCCAGGGGCATCCCTGTAGAAATCCAAC
GCCATGAGTTTGTACCGCCCTTGTTCCGAGAAGAACGTGAGGTGGTGGAA
CAGCAGAATCCATCACAAAACAACGAACCTAAAGGACTATCGCAACGAGA
ATTGGACAAGCTTCCTTCGTATCATGTTACAAAGAAAACCTTAGAAGAGT
TCAATGAAAAACGAACCCAACGTGTCCGATTTGTCGCGCTTCAGTTTGAT
GACCGTTGTGTAGTGTGTATGTCTGAATATGAAGTGGAAGAGAAGTTACG
CGTGTTACCGTGCGCTCACGAATTTCACGCACCTTGTGTCGATAAATGGT
TGATGATGCATTTACCATGGCACCACCGCCCTTCCAGGGGCATCCCTGTA
GAAATCCAACGCCATGAGTTTGTACCGCCCTTGTTCCGAGAAGAACGTGA
GGTGGTGGAACAGCAGAATCCATCACAAAACAACGAACCTAAAGGACTAT
CGCAACGAGAATTGGACAAGCTTCCTTCGTATCATGTTACAAAGAAAACC
TTAGAAGAGTTCAATGAAAAACGAACCCAACGTGTCCGATTTGTCGCGCT
TCAGTTTGATGACCGTTGTGTAGTGTGTATGTCTGAATATGAAGTGGAAG
AGAAGTTACGCGTGTTACCGTGCGCTCACGAATTTCACGCACCTTGTGTC
GATAAATGGTTGATGATGCATTTACCATGGCACCACCGCCCTTCCAGGGG
CATCCCTGTAGAAATCCAACGCCATGAGTTTGTACCGCCCTTGTTCCGAG
AAGAACGTGAGGTGGTGGAACAGCAGAATCCATCACAAAACAACGAACCT
AAAGGACTATCGCAACGAGAATTGGACAAGCTTCCTTCGTATCATGTTAC
AAAGAAAACCTTAGAAGAGTTCAATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00052370-exon-scaffold_213-1575043694:868433..869097 | TCONS_00052370-exon-scaffold_213-1575043694:868433..869097 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1575043694:867150..867255 | TCONS_00052370-exon-scaffold_213-1575043694:867150..867255 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1575043694:864602..866612 | TCONS_00052370-exon-scaffold_213-1575043694:864602..866612 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1510915933:868433..869097 | TCONS_00052370-exon-scaffold_213-1510915933:868433..869097 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1510915933:867150..867255 | TCONS_00052370-exon-scaffold_213-1510915933:867150..867255 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1510915933:864602..866612 | TCONS_00052370-exon-scaffold_213-1510915933:864602..866612 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1491911889:868433..869097 | TCONS_00052370-exon-scaffold_213-1491911889:868433..869097 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1491911889:867150..867255 | TCONS_00052370-exon-scaffold_213-1491911889:867150..867255 | Clytia hemisphaerica | exon |
| TCONS_00052370-exon-scaffold_213-1491911889:864602..866612 | TCONS_00052370-exon-scaffold_213-1491911889:864602..866612 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:864602..869097 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052370 vs. Swiss-Prot (Human)
Match: RNF44 (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.810e-17 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 574 NNEPKGLSQRELDKLPSYHVTKKTLEEFNENDRCVVCMSEYEVEEKLRVLPCAHEFHAPCVDKWLMTNPTCPICRASV 807
+ +P+GL++ ++++LPSY + + +E CVVC S++E + LRVLPC HEFH CVDKWL N TCPICRA
Sbjct: 349 DAKPRGLTKADIEQLPSYRFNPDSHQ--SEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
The following BLAST results are available for this feature:
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