TCONS_00052367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052367
Unique NameTCONS_00052367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052367 ID=TCONS_00052367|Name=TCONS_00052367|organism=Clytia hemisphaerica|type=transcript|length=594bp
CACATAAATTCGGCTTGAAAGCCGTGGTTACTTATTCCCCGATTCGCTAT
GTACAAGATGGTTAGAGTGCGTTACCCATTCGGACGCGTGAAGTTACACA
GCCATCTTGAAAGTAAGTTTGATCTCTCCATTTTACCTTTATACCAAAGG
AACTCGTCAGAAAAATGGGAGAACAAGCTGAAATCGAATCAGTAGAAGTT
ATTGAAGATGAAGTTCCAGTTGAAGATGAAGttTCAGTGGAAGCTGAGGT
AGAAGAGGAAGAACCTGCAGCCGAGGAAGAACCTGCAGCCGAGGAAGGTG
GTGACGAAGGTGGTGATGATGAGGATGGAGACGACGAGGATGACGAGGAC
GATGATGATGAGGACGACGAAGATGAAGAAGATCCGGAAGATCCATATGA
AACCAGCCGTACCAGATGTGCTGAAACCAAAGAATGTCGAGATCTTATGA
CACTCTTTGAACAATGTGAAGAACGTGTTAATTCTAAATCACAAACTGAG
GAAAACTGTACTCAAGAAATATTAGACTATTTTCATTGTCAAGACCATTG
CGCTTCCAAGGGTgtattttcaaaacttaaatagaacaattttt
Run BLAST on NCBI

transcript from alignment at scaffold_213:734529..741427-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052367 ID=TCONS_00052367|Name=TCONS_00052367|organism=Clytia hemisphaerica|type=transcript|length=6899bp|location=Sequence derived from alignment at scaffold_213:734529..741427- (Clytia hemisphaerica)
CACATAAATTCGGCTTGAAAGCCGTGGTTACTTATTCCCCGATTCGCTAT
GTACAAGATGGTTAGAGTGCGTTACCCATTCGGACGCGTGAAGTTACACA
GCCATCTTGAAAGTAAGTTTGATCTCTCCATTTTACCTTTATACCAAAGG
AACTCGTCAGAAAAATGGGAGAACAAGCTGAAATCGAATCAGTAGAAGTT
ATTGAAGATGAAGTTCCAGTTGAAGATGAAGGTAAGGTATTTCTATACAG
TCTGACAGAAAAATTCTGTGGAATATTGTACTACCGTGAGATAGGGTAAC
TTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATGAATGGCCTGGCT
GGTCATTAAAAGACAAAGTTAAATTAAAACAAAAATGGTAGAGTAGAGCT
GCAAGCTGNTGGCCTGTGCTGATAGGAGCCTGACTGGGGCGACGACAAAA
GTTGAACCTGGTTGAGCCCCCAAAAGGGACCCCCAAATGTTTCAGGCTGG
AAGCCATATATGTGACTTCCCAAGCGATTTGAAGTACATAAAAGTCTGAT
CGGTAAAAAGACCGTTCTTCTTTGGCCTCTACGCGACCAGTCTTTTTACC
ATTTGGGCTGCTTTGATATTGAAGAAGGCCGATGTGAGGCCGCNTGTTTC
ACGGTACTTGTCAATCAATTCACGCAATCATATGCTAATTTTTTCCTCAA
ATTCACGCATTCACGCAATGTTTTTTTGCAATTCATGCAATTGTTGTTCA
CACAATGCATTTTAATTCACACNGTTAGCCCCTAACATCGGCCCTTAGCT
TTGTTTTTCAATTTACTTACATTTTCAAGTACATTTGGAACAAAGAAAGA
TTTTTTCAGAAATCAAAAAGGGCAAAACAAAACAAAAAGATAAAAGGGAG
GGCGCTCAAAAGAATACGTNAAATTTTCACGCATTCATGCAAGTGAAAAG
CCCTCATCCATTCACGTAAACCAAATTCAAACCGCTGGTGGCCCCATCAA
TACCGTGAAGTCGGGTAGCTTGCATCAGTGGAGGGAAACTTGCATAGCCA
TCAAATGACTGACCAATCAAAGCAGCAAAATTTCAAAACAAATAAACTAA
ACAAATAACGCAGACATTTCGCTGAATGCTCAGAGCGCAACATCCTACCT
TATAAAGGAAGAAATTTTGGCGGAAAGAAAATTTGGCGGATTTGGCGGAT
TTGACTGAAATCCGCCAAATTAAGTTCCCGCCAAAAGTTCTTTTTTCCGC
CATCCGCCAAATTAAATTCCCGCCAAATTAAACATTTTGAAAATAAGATC
TCTTTTAAGGTGTTTTTGCTATTTTTTCGCTGTTTTGACGCCATCTTAAG
GTTAAATTTTTAAGCGACTGCCAAATTAAATTCCGGCCAAATTTAGTTTT
TTCGTCCATCCGCCAAATTAAATTCCCGTCAAAATTTCTTCCTTTAAGGT
ATTTTCCCTTTCCTATCTACCGTCAACTGCTCTAACTTGGGATGATTGGA
CAAAACATGGGATGCCAATTTGACCACAATTTCACCGAACCTCCAAAGTC
ATTTGATTTGAGTAAATGAACGGCGTTTTAAAAAATACACAATTTCTCTT
TCGCACCTACTGTAGTAGGCTTTTAAATTGTAATATGAAAAAAATCCATA
GTGGAACATACGCGAATGTCTGGAACGAAGAAGACGGGTCTTTAAATTCT
CCAATCGGTGTCTGGTCATTTTGAATGAAAACTGTTAGGCTTCACTTTAC
CTTCTTTACCTTTACCTTCTTTCTTTTGGCTTTCTGAGACTTAGTAATAG
TTTCTCATTTCTGACTGAGACTTCATACCTATCAATCACTTGTCCGACTG
TGTTTGATCAATTTCACCCAATCTTATTATGGCACCGAGTGGGATTCGAA
CCAACGCCAAAGAAATGTCATCGTATTTGGAAACCAAGGTTTTAACCGTT
CAGCCATTATTGCACAGCAAAATCCGCAATTCGTAACAAATAAACGTAAC
TGACAAATCTTTATATGTAGGTGAAGCTTCCAACCCTACTCGTGCCATCT
TTATCAGCTAAACTTGCCAGAGCAAATGGTATTATATCTAAGCTTAGTCA
CTACGTTTCGACAAAAACCTTAGTTAACATTTATTATGCTCTTTTTCATT
TTCATCTTCAATATGGTTGCCAATTCTGGGGTCTTACTGACAATACCACC
TCCAAGAAGCCTATATTTAGCCTTACGTCTTATTACTTTTAACAACTCTC
GATGCCCTTCTTCTCCCCTCTTTTCTGACCTCAAAGTTCTCAAATTTTTG
ACCTTGTCAAATGCCTTAAAATATATCTTTTGTCCACAGATTCCTAAATA
ACAAATTACCCTTCCACCTTCTGGAGTTTTTTAAAACTTCATTCAGCTCG
ACGATGAAGACGAAAACACTCAAAGCACGTTTGAAACTACTTATTGTTCC
CTCCTACAACACCATTACCTTTGGGAACAAATCTTTCTTTAAGTTTTGCA
TAACACAGCATCCAGTGATCTTACCCAAATATTACCCTGAGCTCATCTGA
TTTCAGTTTTGTTAGGTCTCTGCCCTTACTCACTGTCTTTGGAGATACTG
AGTTGGGCTTCCCAACTAAGAAAGGTTAGCAAACTTTCTTTTAATTTCTT
TTCCCAACTAAGAAAGTTAGCAAACTTTCTTTTAATTTCTTTTTCATTAG
GTAAAAAAATTCTTAAAAATAAAAACATTTTTAAATAATTTACAAAGTGT
TATAAACGCAATCTGTACTTAGGTGGCCGCATCTTTTTGATTAGCTAGAC
TAAGGCGGTCTCCTTCCATATATTTTTTATGCATTATCATCACTTGTATC
CTTTTTGTAGTGTTAGATGGTAAATGAATACTTACTTACTTACTGCCCCT
AAAAAAGCTGCTATGCAGCCCTAGGTTTAGTCACTAGGTACGGGTGCCCC
TAAGAGCACTATGTTATGACTCTCTAGCTCCAACCAGCTACAACCCTAAC
TGGTCTTGACGGACCCAATAGACCTTTTCGCCTTTCCATCCGCTATCTTG
AATTGTATGAAAAAATACAGGAACGAAAAAGCCGTGGTTGGATTTAGTTG
GAAAATATGCAAAACATTAAAAAAAAACAAAGCATCTTAAAAAGAAATAT
TATAAACATTAGAACAACAAAAGATGGAATTTCTTAATCTAAAAAGAAAT
ATTTACAGAACAATAAAAGTCTTTTAGAAATTGGTTCTTAAAGACAAAGC
ATGTTCTGTTTTCGTGCCAGTAAAAAATTCCACAAAGTTGGAGTACACAC
ATCAACTTTCAAAACACACAAAATGAAAGCAGTAATTATGACCAGGGCTC
AAAATAACGGTCGGACATCGGACATTGTCCGACCCAATTGCTGAAATGTC
CGACCCAAATCGATTCTAGTCGGACATCATGTCCGACCCAATTACTTTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGTAAAAATCATGGGCTTCTGACCATTAATT
GGCATTTGTTTAGCTTCTTCGTGATCAATGTAAAATTCTATCAGAAGCTT
GTATTATACTTGAAATATACCTCACATAAAAATCAATCGGACATGTCCGA
CTCATTTTACTTTAAAAGCCTTAGGACATGTCCGACCCAAATCAATTTTT
GATCGGACAATGTGTCCGACCACCTAAATATCGTTATTTCGAGCCCTGAT
GACGTTACACATTCTTTTCCGTACAAGAAAATATTAAAACCCTCGTTTTT
GCAAAAAGGTCTATATCCCCTGAATCACTGAATGACGGATGGGAAAAATT
ATCAAGGAAAAAAATCGCTCATCGCGCTCTGAGCATTAAGCGAAATTTGC
CCGCAGCTCTTCTCTACCATTTTGTTTTAATTTAACTTTGTATTTTAATG
ACCAGACAGGTCATTCATTTGAGCAAGTTTCCCTCCACTGATTCAAGTTA
CCCGACTTCACGGTAGTTGTTTAAGACCAGACTCTCCCACTCAATACAAT
TGATAACTTTTTCAAAATGATGACTAATTCATAACCAGTCAGTTGATTGA
TCGGATATTCAATTGATTGATTCCAATAATCGAACCTATTCTAAAATCTT
GAGCACTGTATCCCTTAGGATGTCAATCCAACGAATAGAACACCAAATCA
ATATTGAACACAATTGAATGTAGTCAAATATCATATCACCCAGGATTTGC
CGTTCAATTGCTTCAATTACGTTTTTTATTCTATACGATTATGTTCAATT
AAGTTCAATTGATTTGATTGCATTTGCTAGCATTAAAGGGACATAACAGT
ACTTGCGAAATTTGTAAACAAACTGTATGCAGCAGATACAAAATCAAAAC
AAATATCACATTTCAAAATAAAAAAATCAAACCAAATATGGCTAATTTTG
ATTGTTTAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAATTGTT
CTCTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTACTTTAAT
GTCCCTTTAATCGCCCTCGCATTGTGCTGTACTTTTGTGCTTGCTCTTAT
CTGATATTGTTCTCAATCAAACGTAATTCAAACGCAGTCGAACACAATCG
AATATTAGATTACCCAGGAATCGGCCATTTGATTGAGATTTACTTGAGTT
CCAGTGAGTTCGACAATCAAATCGCAATTATTCGATTGCATTTGATTACA
TTCAATTAGTTCGATTGCGATTTTTGTTTGAACTTGTTCGATTGACACTG
TCAGGCTTTATCGATTGAATCATGGATTGGCTATTGATGATTGTATCAAT
CATTTTAGAGTCAATTAGCCTGGGTATCCAGACTCAAAATTTTAAAAATA
CAAAAATTACCTCAACATACAAAGTTCTAAAATTATAGATTCTGGTGCAC
CTAGAACAGCCTGATATCGTAACTTGGGACTATCGACAAATCAAAACATA
TGGGACTGCCACCATTTCACCGAACCTCCAAAGTCATTAATTAACATAAC
CGCAAATCATAGATAGCAAATAATGTGAATACACTAATCTCACCAGGTAG
GCTTTCACACCGCAAAAGAAACAAATCTTTGCACTTTATGGGACGATTTA
GACTAATTCTTGAATAGACCTTTTCCCCTTTCCATCTGCCATACAGAACC
CCTTTTCATCTGCCATGTTGAATTTTATGCAAAAGTTATGGTGGCAGAAT
TACCTTGGTGAGATCTCATTGAAAAATATGCTAAACCTATTCAAAAAGAA
AGTATTAATATTAAACAGTTTTTGCCTGTAGAAATTTTTGATGAATCTTT
GTGTACTGTACTTAAGCATAACTTTATTATTAAATTGATTAATCCTCCTG
AATATTTTCAACGTGAAGTTCAAGCACGGAAGCATTTTCATTTTATTTGA
ATAATAATGAATAATAAACATTTTATTCAAATAAAATGAAAACGCTTCTG
TGCTTGAACTTCACTTTGAAACAATAACTTTACATTTGATCATGCTTTTT
GCATGTGGTTTTTTGCACATGATATGCTATATTATGTAATTTTATACATG
AAAAATTACAGATTACAAGGAAAGTAAAGAACGGCTCTGCAGTGTGAGGC
TGTCAGTCTGGAAACCTCAAAAATGGTCTGATTTGGTTGAAATTGGTAAT
TTTTTTTCAATTTTACTATAGGGCCTATGAATAATTTTAAAACACTGAAA
TTGAGCCCAGTGCATGTTAGCACCTTCGACAGGGGGCCGTCCACATAGTA
TGTACACACAAGGGGGAGGGGGGTCTTCTCAAGAGCATATACTTGCGTAC
AGGGGGATGGAGGGGAATTTTTTCATAGCCCTTTTTTGCTTTTCTGTTTT
TTTGTCAACTTTTACGCTTGTTATACGCATCAAGTTTCATGCATTAAATA
AAGGTCCGAACCAAACGATTTGAATTCGAAATTTTCTTCAACCAAGGGGG
AATGAACATTTTAGTGCGTACGTACTCTGGGGACTGCCCTGAGGGTAAAA
AATGTTTTCCATAAAAAAAGAATCATTGAAAAACCTTTTTCATTTGCTGA
ATTATTCAGCCAAAAGTTTTCTCTTTTTACAGCTCTGCGATGGTAAAAGA
CCCCCTTTAGAAGTGCAAGTGCGCACTCCATGCTGTAAAATGATAGTGAA
AAAATGATGAAAAAAGCTATTTTGAAATAATTGCATGCTTTGCATTGCCT
AAAAATGCCATTTTTCCTTACTTTTGCCTTTAAATTAACTCTTCACTAAA
TCAAAATTCATTTCATTTTATTTTTCTTTCCTTTAGTTTCAGTGGAAGCT
GAGGTAGAAGAGGAAGAACCTGCAGCCGAGGAAGAACCTGCAGCCGAGGA
AGGTGGTGACGAAGGTGGTGATGATGAGGATGGAGACGACGAGGATGACG
AGGACGATGATGATGAGGACGACGAAGATGAAGAAGATCCGGAAGATCCA
TATGAAACCAGCCGTACCAGATGTGCTGAAACCAAAGAATGTCGAGATCT
TATGACACTCTTTGAACAATGTGAAGAACGTGTTAATTCTAAATCACAAA
CTGAGGAAAACTGTACTCAAGAAATATTAGACTATTTTCATTGTCAAGAC
CATTGCGCTTCCAAGGGTGTATTTTCAAAACTTAAATAGAACAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033106XLOC_033106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052367-exon-scaffold_213-1575043694:741197..741427TCONS_00052367-exon-scaffold_213-1575043694:741197..741427Clytia hemisphaericaexon
TCONS_00052367-exon-scaffold_213-1575043694:734529..734891TCONS_00052367-exon-scaffold_213-1575043694:734529..734891Clytia hemisphaericaexon
TCONS_00052367-exon-scaffold_213-1510915933:741197..741427TCONS_00052367-exon-scaffold_213-1510915933:741197..741427Clytia hemisphaericaexon
TCONS_00052367-exon-scaffold_213-1510915933:734529..734891TCONS_00052367-exon-scaffold_213-1510915933:734529..734891Clytia hemisphaericaexon
TCONS_00052367-exon-scaffold_213-1491911889:741197..741427TCONS_00052367-exon-scaffold_213-1491911889:741197..741427Clytia hemisphaericaexon
TCONS_00052367-exon-scaffold_213-1491911889:734529..734891TCONS_00052367-exon-scaffold_213-1491911889:734529..734891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:734529..741427 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
156.391	168.167	187.08	201.818	333.84	318.428	457.523	540.035	432.903	359.1	505.501	502.756	388.764	432.286	363.357	358.176	571.443	549.377	226.315	270.202	301.53	316.549	213.948	218.908	753.451	708.142	259.821	280.247	172.44	163.401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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