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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052366 ID=TCONS_00052366|Name=TCONS_00052366|organism=Clytia hemisphaerica|type=transcript|length=742bp
AGTGCGTTACCCATTCGGACGCGTGAAGTTACACAGCCATCTTGAAAGTA
AGTTTGATCTCTCCATTTTACCTTTATACCAAAGGAACTCGTCAGAAAAA
TGGGAGAACAAGCTGAAATCGAATCAGTAGAAGTTATTGAAGATGAAGTT
CCAGTTGAAGATGAAGttTCAGTGGAAGCTGAGGTAGAAGAGGAAGAACC
TGCAGCCGAGGAAGAACCTGCAGCCGAGGAAGGTGGTGACGAAGGTGGTG
ATGATGAGGATGGAGACGACGAGGATGACGAGGACGATGATGATGAGGAC
GACGAAGATGAAGAAGATCCGGAAGATCCATATGAAACCAGCCGTACCAG
ATGTGCTGAAACCAAAGAATGTCGAGATCTTATGACACTCTTTGAACAAT
GTGAAGAACGTGTTAATTCTAAATCACAAACTGAGGAAAACTGTACTCAA
GAAATATTAGACTATTTTCATTGTCAAGACCATTGCGCTTCCAAGGGTgt
attttcaaaacttaaatagaacaatttttagTGGAATGTAGAGTTTCAAA
ATAATGTATTATATTCTCTCAATGAAAATGttgttaaatttgaaaattgc
ttTTACAACGTGCAAACAGAcctcaatttatattttttaaattattaaaa
atttcacTCAGTTTTCATTCTGtacaagattttattttttgaatttaatg
tgtaTTGAGAGTCTTAACAGTTTTATGCAACAAAGATACCCT Run BLAST on NCBI protein sequence of TCONS_00052366-protein >TCONS_00052366-protein ID=TCONS_00052366-protein|Name=TCONS_00052366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MGEQAEIESVEVIEDEVPVEDEVSVEAEVEEEEPAAEEEPAAEEGGDEGG
DDEDGDDEDDEDDDDEDDEDEEDPEDPYETSRTRCAETKECRDLMTLFEQ
CEERVNSKSQTEENCTQEILDYFHCQDHCASKGVFSKLK Run BLAST on NCBI transcript from alignment at scaffold_213:733031..741362- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052366 ID=TCONS_00052366|Name=TCONS_00052366|organism=Clytia hemisphaerica|type=transcript|length=8332bp|location=Sequence derived from alignment at scaffold_213:733031..741362- (Clytia hemisphaerica)
AGTGCGTTACCCATTCGGACGCGTGAAGTTACACAGCCATCTTGAAAGTA
AGTTTGATCTCTCCATTTTACCTTTATACCAAAGGAACTCGTCAGAAAAA
TGGGAGAACAAGCTGAAATCGAATCAGTAGAAGTTATTGAAGATGAAGTT
CCAGTTGAAGATGAAGGTAAGGTATTTCTATACAGTCTGACAGAAAAATT
CTGTGGAATATTGTACTACCGTGAGATAGGGTAACTTGCATCAGTGGAGG
CTAACATGCATAGCCCTCAAATGAATGGCCTGGCTGGTCATTAAAAGACA
AAGTTAAATTAAAACAAAAATGGTAGAGTAGAGCTGCAAGCTGNTGGCCT
GTGCTGATAGGAGCCTGACTGGGGCGACGACAAAAGTTGAACCTGGTTGA
GCCCCCAAAAGGGACCCCCAAATGTTTCAGGCTGGAAGCCATATATGTGA
CTTCCCAAGCGATTTGAAGTACATAAAAGTCTGATCGGTAAAAAGACCGT
TCTTCTTTGGCCTCTACGCGACCAGTCTTTTTACCATTTGGGCTGCTTTG
ATATTGAAGAAGGCCGATGTGAGGCCGCNTGTTTCACGGTACTTGTCAAT
CAATTCACGCAATCATATGCTAATTTTTTCCTCAAATTCACGCATTCACG
CAATGTTTTTTTGCAATTCATGCAATTGTTGTTCACACAATGCATTTTAA
TTCACACNGTTAGCCCCTAACATCGGCCCTTAGCTTTGTTTTTCAATTTA
CTTACATTTTCAAGTACATTTGGAACAAAGAAAGATTTTTTCAGAAATCA
AAAAGGGCAAAACAAAACAAAAAGATAAAAGGGAGGGCGCTCAAAAGAAT
ACGTNAAATTTTCACGCATTCATGCAAGTGAAAAGCCCTCATCCATTCAC
GTAAACCAAATTCAAACCGCTGGTGGCCCCATCAATACCGTGAAGTCGGG
TAGCTTGCATCAGTGGAGGGAAACTTGCATAGCCATCAAATGACTGACCA
ATCAAAGCAGCAAAATTTCAAAACAAATAAACTAAACAAATAACGCAGAC
ATTTCGCTGAATGCTCAGAGCGCAACATCCTACCTTATAAAGGAAGAAAT
TTTGGCGGAAAGAAAATTTGGCGGATTTGGCGGATTTGACTGAAATCCGC
CAAATTAAGTTCCCGCCAAAAGTTCTTTTTTCCGCCATCCGCCAAATTAA
ATTCCCGCCAAATTAAACATTTTGAAAATAAGATCTCTTTTAAGGTGTTT
TTGCTATTTTTTCGCTGTTTTGACGCCATCTTAAGGTTAAATTTTTAAGC
GACTGCCAAATTAAATTCCGGCCAAATTTAGTTTTTTCGTCCATCCGCCA
AATTAAATTCCCGTCAAAATTTCTTCCTTTAAGGTATTTTCCCTTTCCTA
TCTACCGTCAACTGCTCTAACTTGGGATGATTGGACAAAACATGGGATGC
CAATTTGACCACAATTTCACCGAACCTCCAAAGTCATTTGATTTGAGTAA
ATGAACGGCGTTTTAAAAAATACACAATTTCTCTTTCGCACCTACTGTAG
TAGGCTTTTAAATTGTAATATGAAAAAAATCCATAGTGGAACATACGCGA
ATGTCTGGAACGAAGAAGACGGGTCTTTAAATTCTCCAATCGGTGTCTGG
TCATTTTGAATGAAAACTGTTAGGCTTCACTTTACCTTCTTTACCTTTAC
CTTCTTTCTTTTGGCTTTCTGAGACTTAGTAATAGTTTCTCATTTCTGAC
TGAGACTTCATACCTATCAATCACTTGTCCGACTGTGTTTGATCAATTTC
ACCCAATCTTATTATGGCACCGAGTGGGATTCGAACCAACGCCAAAGAAA
TGTCATCGTATTTGGAAACCAAGGTTTTAACCGTTCAGCCATTATTGCAC
AGCAAAATCCGCAATTCGTAACAAATAAACGTAACTGACAAATCTTTATA
TGTAGGTGAAGCTTCCAACCCTACTCGTGCCATCTTTATCAGCTAAACTT
GCCAGAGCAAATGGTATTATATCTAAGCTTAGTCACTACGTTTCGACAAA
AACCTTAGTTAACATTTATTATGCTCTTTTTCATTTTCATCTTCAATATG
GTTGCCAATTCTGGGGTCTTACTGACAATACCACCTCCAAGAAGCCTATA
TTTAGCCTTACGTCTTATTACTTTTAACAACTCTCGATGCCCTTCTTCTC
CCCTCTTTTCTGACCTCAAAGTTCTCAAATTTTTGACCTTGTCAAATGCC
TTAAAATATATCTTTTGTCCACAGATTCCTAAATAACAAATTACCCTTCC
ACCTTCTGGAGTTTTTTAAAACTTCATTCAGCTCGACGATGAAGACGAAA
ACACTCAAAGCACGTTTGAAACTACTTATTGTTCCCTCCTACAACACCAT
TACCTTTGGGAACAAATCTTTCTTTAAGTTTTGCATAACACAGCATCCAG
TGATCTTACCCAAATATTACCCTGAGCTCATCTGATTTCAGTTTTGTTAG
GTCTCTGCCCTTACTCACTGTCTTTGGAGATACTGAGTTGGGCTTCCCAA
CTAAGAAAGGTTAGCAAACTTTCTTTTAATTTCTTTTCCCAACTAAGAAA
GTTAGCAAACTTTCTTTTAATTTCTTTTTCATTAGGTAAAAAAATTCTTA
AAAATAAAAACATTTTTAAATAATTTACAAAGTGTTATAAACGCAATCTG
TACTTAGGTGGCCGCATCTTTTTGATTAGCTAGACTAAGGCGGTCTCCTT
CCATATATTTTTTATGCATTATCATCACTTGTATCCTTTTTGTAGTGTTA
GATGGTAAATGAATACTTACTTACTTACTGCCCCTAAAAAAGCTGCTATG
CAGCCCTAGGTTTAGTCACTAGGTACGGGTGCCCCTAAGAGCACTATGTT
ATGACTCTCTAGCTCCAACCAGCTACAACCCTAACTGGTCTTGACGGACC
CAATAGACCTTTTCGCCTTTCCATCCGCTATCTTGAATTGTATGAAAAAA
TACAGGAACGAAAAAGCCGTGGTTGGATTTAGTTGGAAAATATGCAAAAC
ATTAAAAAAAAACAAAGCATCTTAAAAAGAAATATTATAAACATTAGAAC
AACAAAAGATGGAATTTCTTAATCTAAAAAGAAATATTTACAGAACAATA
AAAGTCTTTTAGAAATTGGTTCTTAAAGACAAAGCATGTTCTGTTTTCGT
GCCAGTAAAAAATTCCACAAAGTTGGAGTACACACATCAACTTTCAAAAC
ACACAAAATGAAAGCAGTAATTATGACCAGGGCTCAAAATAACGGTCGGA
CATCGGACATTGTCCGACCCAATTGCTGAAATGTCCGACCCAAATCGATT
CTAGTCGGACATCATGTCCGACCCAATTACTTTCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAGTAAAAATCATGGGCTTCTGACCATTAATTGGCATTTGTTTAGCT
TCTTCGTGATCAATGTAAAATTCTATCAGAAGCTTGTATTATACTTGAAA
TATACCTCACATAAAAATCAATCGGACATGTCCGACTCATTTTACTTTAA
AAGCCTTAGGACATGTCCGACCCAAATCAATTTTTGATCGGACAATGTGT
CCGACCACCTAAATATCGTTATTTCGAGCCCTGATGACGTTACACATTCT
TTTCCGTACAAGAAAATATTAAAACCCTCGTTTTTGCAAAAAGGTCTATA
TCCCCTGAATCACTGAATGACGGATGGGAAAAATTATCAAGGAAAAAAAT
CGCTCATCGCGCTCTGAGCATTAAGCGAAATTTGCCCGCAGCTCTTCTCT
ACCATTTTGTTTTAATTTAACTTTGTATTTTAATGACCAGACAGGTCATT
CATTTGAGCAAGTTTCCCTCCACTGATTCAAGTTACCCGACTTCACGGTA
GTTGTTTAAGACCAGACTCTCCCACTCAATACAATTGATAACTTTTTCAA
AATGATGACTAATTCATAACCAGTCAGTTGATTGATCGGATATTCAATTG
ATTGATTCCAATAATCGAACCTATTCTAAAATCTTGAGCACTGTATCCCT
TAGGATGTCAATCCAACGAATAGAACACCAAATCAATATTGAACACAATT
GAATGTAGTCAAATATCATATCACCCAGGATTTGCCGTTCAATTGCTTCA
ATTACGTTTTTTATTCTATACGATTATGTTCAATTAAGTTCAATTGATTT
GATTGCATTTGCTAGCATTAAAGGGACATAACAGTACTTGCGAAATTTGT
AAACAAACTGTATGCAGCAGATACAAAATCAAAACAAATATCACATTTCA
AAATAAAAAAATCAAACCAAATATGGCTAATTTTGATTGTTTAATTGTTT
TACAAGTTTGTTTTGGACACGTGATTTTAATTGTTCTCTTTAATGACACG
TGGTTCGCGCAATGTTTACATTTTACTACTTTAATGTCCCTTTAATCGCC
CTCGCATTGTGCTGTACTTTTGTGCTTGCTCTTATCTGATATTGTTCTCA
ATCAAACGTAATTCAAACGCAGTCGAACACAATCGAATATTAGATTACCC
AGGAATCGGCCATTTGATTGAGATTTACTTGAGTTCCAGTGAGTTCGACA
ATCAAATCGCAATTATTCGATTGCATTTGATTACATTCAATTAGTTCGAT
TGCGATTTTTGTTTGAACTTGTTCGATTGACACTGTCAGGCTTTATCGAT
TGAATCATGGATTGGCTATTGATGATTGTATCAATCATTTTAGAGTCAAT
TAGCCTGGGTATCCAGACTCAAAATTTTAAAAATACAAAAATTACCTCAA
CATACAAAGTTCTAAAATTATAGATTCTGGTGCACCTAGAACAGCCTGAT
ATCGTAACTTGGGACTATCGACAAATCAAAACATATGGGACTGCCACCAT
TTCACCGAACCTCCAAAGTCATTAATTAACATAACCGCAAATCATAGATA
GCAAATAATGTGAATACACTAATCTCACCAGGTAGGCTTTCACACCGCAA
AAGAAACAAATCTTTGCACTTTATGGGACGATTTAGACTAATTCTTGAAT
AGACCTTTTCCCCTTTCCATCTGCCATACAGAACCCCTTTTCATCTGCCA
TGTTGAATTTTATGCAAAAGTTATGGTGGCAGAATTACCTTGGTGAGATC
TCATTGAAAAATATGCTAAACCTATTCAAAAAGAAAGTATTAATATTAAA
CAGTTTTTGCCTGTAGAAATTTTTGATGAATCTTTGTGTACTGTACTTAA
GCATAACTTTATTATTAAATTGATTAATCCTCCTGAATATTTTCAACGTG
AAGTTCAAGCACGGAAGCATTTTCATTTTATTTGAATAATAATGAATAAT
AAACATTTTATTCAAATAAAATGAAAACGCTTCTGTGCTTGAACTTCACT
TTGAAACAATAACTTTACATTTGATCATGCTTTTTGCATGTGGTTTTTTG
CACATGATATGCTATATTATGTAATTTTATACATGAAAAATTACAGATTA
CAAGGAAAGTAAAGAACGGCTCTGCAGTGTGAGGCTGTCAGTCTGGAAAC
CTCAAAAATGGTCTGATTTGGTTGAAATTGGTAATTTTTTTTCAATTTTA
CTATAGGGCCTATGAATAATTTTAAAACACTGAAATTGAGCCCAGTGCAT
GTTAGCACCTTCGACAGGGGGCCGTCCACATAGTATGTACACACAAGGGG
GAGGGGGGTCTTCTCAAGAGCATATACTTGCGTACAGGGGGATGGAGGGG
AATTTTTTCATAGCCCTTTTTTGCTTTTCTGTTTTTTTGTCAACTTTTAC
GCTTGTTATACGCATCAAGTTTCATGCATTAAATAAAGGTCCGAACCAAA
CGATTTGAATTCGAAATTTTCTTCAACCAAGGGGGAATGAACATTTTAGT
GCGTACGTACTCTGGGGACTGCCCTGAGGGTAAAAAATGTTTTCCATAAA
AAAAGAATCATTGAAAAACCTTTTTCATTTGCTGAATTATTCAGCCAAAA
GTTTTCTCTTTTTACAGCTCTGCGATGGTAAAAGACCCCCTTTAGAAGTG
CAAGTGCGCACTCCATGCTGTAAAATGATAGTGAAAAAATGATGAAAAAA
GCTATTTTGAAATAATTGCATGCTTTGCATTGCCTAAAAATGCCATTTTT
CCTTACTTTTGCCTTTAAATTAACTCTTCACTAAATCAAAATTCATTTCA
TTTTATTTTTCTTTCCTTTAGTTTCAGTGGAAGCTGAGGTAGAAGAGGAA
GAACCTGCAGCCGAGGAAGAACCTGCAGCCGAGGAAGGTGGTGACGAAGG
TGGTGATGATGAGGATGGAGACGACGAGGATGACGAGGACGATGATGATG
AGGACGACGAAGATGAAGAAGATCCGGAAGATCCATATGAAACCAGCCGT
ACCAGATGTGCTGAAACCAAAGAATGTCGAGATCTTATGACACTCTTTGA
ACAATGTGAAGAACGTGTTAATTCTAAATCACAAACTGAGGAAAACTGTA
CTCAAGAAATATTAGACTATTTTCATTGTCAAGACCATTGCGCTTCCAAG
GGTGTATTTTCAAAACTTAAATAGAACAATTTTTAGTGGAATGTAGAGTT
TNCATTTTCATTTTATTTGAATAATAATGAATAATAAACATTTTATTCAA
ATAAAATGAAAACGCTTCTGTGCTTGAACTTCACTTTGAAACAATAACTT
TACATTTGATCATGCTTTTTGCATGTGGTTTTTTGCACATGATATGCTAT
ATTATGTAATTTTATACATGAAAAATTACAGATTACAAGGAAAGTAAAGA
ACGGCTCTGCAGTGTGAGGCTGTCAGTCTGGAAACCTCAAAAATGGTCTG
ATTTGGTTGAAATTGGTAATTTTTTATCAATTTTACTATAGGGCCTATGA
ATAATTTTAAAACACTGAAATTGAGCCCAGTGCATGTTAGCACCTTCGAC
AGGGGGCCGTCCACATAGTATGTACACACAAGGGGGAGGGGGGTCTTCTC
AAGAGCATATACTTGCGTACAGGGGGATGGAGGGGAATTTTTTCATAGCC
CTTTTTTGCTTTTCTGTTTTTTTGTCAACTTTTACGCTTGTTATACGCAT
CAAGTTTCATGCATTAAATAAAGGTCCGAACCAAACGATTTGAATTCGAA
ATTTTCTTCAACCAAGGGGGAATGAACATTTTAGTGCGTACGTACTCTGG
GGACTGCCCTGAGGGTAAAAAATGTTTTCCATAAAAAAAGAATCATTGAA
AAACCTTTTTCATTTGCTGAATTATTCAGCCAAAAGTTTTCTCTTTTTAC
AGCTCTGCGATGGTAAAAGACCCCCTTTAGAAGTGCAAGTGCGCACTCCA
TGCTGTAAAATGATAGTGAAAAAATGATGAAAAAAGCTATTTTGAAATAA
TTGCATGCTTTGCATTGCCTAAAAATGCCATTTTTCCTTACTTTTGCCTT
TAAATTAACTCTTCACTAAATCAAAATTCATTTCATTTTATTTTTCTTTC
CTTTAGTTTCAGTGGAAGCTGAGGTAGAAGAGGAAGAACCTGCAGCCGAG
GAAGAACCTGCAGCCGAGGAAGGTGGTGACGAAGGTGGTGATGATGAGGA
TGGAGACGACGAGGATGACGAGGACGATGATGATGAGGACGACGAAGATG
AAGAAGATCCGGAAGATCCATATGAAACCAGCCGTACCAGATGTGCTGAA
ACCAAAGAATGTCGAGATCTTATGACACTCTTTGAACAATGTGAAGAACG
TGTTAATTCTAAATCACAAACTGAGGAAAACTGTACTCAAGAAATATTAG
ACTATTTTCATTGTCAAGACCATTGCGCTTCCAAGGGTGTATTTTCAAAA
CTTAAATAGAACAATTTTTAGTGGAATGTAGAGTTTCAAAATAATGTATT
ATATTCTCTCAATGAAAATGTTGTTAAATTTGAAAATTGCTTTTACAACG
TGCAAACAGACCTCAATTTATATTTTTTAAATTATTAAAAATTTCACTCA
GTTTTCATTCTGTACAAGATTTTATTTTTTGAATTTAATGTGTATTGAGA
GTCTTAACAGTTTTATGCAACAAAGATACCCT Coding sequence (CDS) from alignment at scaffold_213:733031..741362- >TCONS_00052366 ID=TCONS_00052366|Name=TCONS_00052366|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_213:733031..741362- (Clytia hemisphaerica)
TTTCAGTGGAAGCTGAGGTAGAAGAGGAAGAACCTGCAGCCGAGGAAGAA
CCTGCAGCCGAGGAAGGTGGTGACGAAGGTGGTGATGATGAGGATGGAGA
CGACGAGGATGACGAGGACGATGATGATGAGGACGACGAAGATGAAGAAG
ATCCGGAAGATCCATATGAAACCAGCCGTACCAGATGTGCTGAAACCAAA
GAATGTCGAGATCTTATGACACTCTTTGAACAATGTGAAGAACGTGTTAA
TTCTAAATCACAAACTGAGGAAAACTGTACTCAAGAAATATTAGACTATT
TTCATTGTCAAGACCATTGCGCTTCCAAGGGTGTATTTTCAAAACTTAAA
TAGATGGGAGAACAAGCTGAAATCGAATCAGTAGAAGTTATTGAAGATGA
AGTTCCAGTTGAAGATGAAGTTTCAGTGGAAGCTGAGGTAGAAGAGGAAG
AACCTGCAGCCGAGGAAGAACCTGCAGCCGAGGAAGGTGGTGACGAAGGT
GGTGATGATGAGGATGGAGACGACGAGGATGACGAGGACGATGATGATGA
GGACGACGAAGATGAAGAAGATCCGGAAGATCCATATGAAACCAGCCGTA
CCAGATGTGCTGAAACCAAAGAATGTCGAGATCTTATGACACTCTTTGAA
CAATGTGAAGAACGTGTTAATTCTAAATCACAAACTGAGGAAAACTGTAC
TCAAGAAATATTAGACTATTTTCATTGTCAAGACCATTGCGCTTCCAAGG
GTGTATTTTCAAAACTTAAATAGATGGGAGAACAAGCTGAAATCGAATCA
GTAGAAGTTATTGAAGATGAAGTTCCAGTTGAAGATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052366-exon-scaffold_213-1575043694:741197..741362 | TCONS_00052366-exon-scaffold_213-1575043694:741197..741362 | Clytia hemisphaerica | exon |
| TCONS_00052366-exon-scaffold_213-1575043694:733031..733606 | TCONS_00052366-exon-scaffold_213-1575043694:733031..733606 | Clytia hemisphaerica | exon |
| TCONS_00052366-exon-scaffold_213-1510915933:741197..741362 | TCONS_00052366-exon-scaffold_213-1510915933:741197..741362 | Clytia hemisphaerica | exon |
| TCONS_00052366-exon-scaffold_213-1510915933:733031..733606 | TCONS_00052366-exon-scaffold_213-1510915933:733031..733606 | Clytia hemisphaerica | exon |
| TCONS_00052366-exon-scaffold_213-1491911889:741197..741362 | TCONS_00052366-exon-scaffold_213-1491911889:741197..741362 | Clytia hemisphaerica | exon |
| TCONS_00052366-exon-scaffold_213-1491911889:733031..733606 | TCONS_00052366-exon-scaffold_213-1491911889:733031..733606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:733031..741362 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023184 | Ubol_cytC_Rdtase_hinge_dom |
Blast
The following BLAST results are available for this feature:
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