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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052319 ID=TCONS_00052319|Name=TCONS_00052319|organism=Clytia hemisphaerica|type=transcript|length=3293bpRun BLAST on NCBI protein sequence of TCONS_00052319-protein >TCONS_00052319-protein ID=TCONS_00052319-protein|Name=TCONS_00052319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=860bp MESNLLTFVLLITSTIVYQSDAFRVIKNSQYGKKQRFHSQAQFDKIHKFLRun BLAST on NCBI transcript from alignment at scaffold_213:164913..175065- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052319 ID=TCONS_00052319|Name=TCONS_00052319|organism=Clytia hemisphaerica|type=transcript|length=10153bp|location=Sequence derived from alignment at scaffold_213:164913..175065- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:164913..175065- >TCONS_00052319 ID=TCONS_00052319|Name=TCONS_00052319|organism=Clytia hemisphaerica|type=CDS|length=36162bp|location=Sequence derived from alignment at scaffold_213:164913..175065- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052319 vs. Swiss-Prot (Human)
Match: PCSK6 (Proprotein convertase subtilisin/kexin type 6 OS=Homo sapiens GN=PCSK6 PE=1 SV=1) HSP 1 Score: 480.33 bits (1235), Expect = 3.173e-151 Identity = 262/550 (47.64%), Postives = 347/550 (63.09%), Query Frame = 2
Query: 404 YTNSWAVHVF--PPEKIIADRIAEKHGFVNIGPIGNLPGHFHFKHDXXXXXXXXXXXXXTDLLELENEVQYAIQQKILKRFKRD-----NQLVFNDPMFQDMWYLENTGQTDGPPGVDLNVMNVWKQGLSGQGIVISVLDDGLDHTHPDLEPNYDRYASCXXXXXXXXXXXXX-XXXXXCHGTRCGGEAAAAANNSMCGVGVAYNAKIGGIRMLDGQATDALEASALGFRGNHIDIYINCWGPKDDGKTFGKPGPMAANALRLGAQKGRYGFGSIYVWATGNGGLTDDDCNCDGYTTSIFTISIGCIGNRGLSAYYTEKCSSTLAVTFNGASHKEGTENKVVTTDLYHKCTEEFKGTSASAPLAAGVIALALERNPKLTWRDVQDLIVQTALKTSPLDDGWKVNGAGFHFNHKFGFGRLDATAMVNKAGEWADLKYTLPQHRKCTAASSLERVNIPNNDAKEILAPTVAC-ENTVAKIDRVEHVVLTVSFVHRRRGDVSIDLISPSNTRSEMLSTRKYDDSDEGLDEWHFMTVYCWGENPRGTWKIIIRD 2026
YTN WAV V P E ADR+A HG++N+G IGNL ++HF H K + L ++ +V++ QQ++ +R KR L FNDP++ +MWYL + G + ++NV WK+G +G+ +V+++LDDG++ HPDL PNYD YAS D+N ND DP PR + +N HGTRC GE AA+ANNS C VG+AYNAKIGGIRMLDG TD +EA +LG R N+IDIY WGP DDGKT PG +A A G +KGR G GSI+VWA+GNGG D C+CDGYT SI+TIS+ G +Y E+C+STLA T++ + E K+VTTDL +CT+ GTS SAP+ AG+IALALE N +LTWRDVQ L+V+T+ WKVNGAG +H +GFG +DA A+V +A +W +P C AAS +IP A T AC E++ ++ +EHVV+ S H RRGD+ I L+SPS T+S++L+ R D S+EG W FMTV+CWGE G W + I+D
Sbjct: 70 YTNHWAVQVLGGPAE---ADRVAAAHGYLNLGQIGNLEDYYHFYHSKTFKRSTLSSRGPHTFLRMDPQVKWLQQQEVKRRVKRQVRSDPQALYFNDPIWSNMWYL-HCGDKNSRCRSEMNVQAAWKRGYTGKNVVVTILDDGIERNHPDLAPNYDSYASYDVNGNDYDPSPRYDASNENKHGTRCAGEVAASANNSYCIVGIAYNAKIGGIRMLDGDVTDVVEAKSLGIRPNYIDIYSASWGPDDDGKTVDGPGRLAKQAFEYGIKKGRQGLGSIFVWASGNGGREGDYCSCDGYTNSIYTISVSSATENGYKPWYLEECASTLATTYSSGAF---YERKIVTTDLRQRCTDGHTGTSVSAPMVAGIIALALEANSQLTWRDVQHLLVKTSRPAHLKASDWKVNGAGHKVSHFYGFGLVDAEALVVEAKKWT----AVPSQHMCVAASDKRPRSIPLVQVLRTTALTSACAEHSDQRVVYLEHVVVRTSISHPRRGDLQIYLVSPSGTKSQLLAKRLLDLSNEGFTNWEFMTVHCWGEKAEGQWTLEIQD 608 The following BLAST results are available for this feature:
BLAST of TCONS_00052319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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