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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052288 ID=TCONS_00052288|Name=TCONS_00052288|organism=Clytia hemisphaerica|type=transcript|length=2559bp
aacccagccggcacacaacgtcaaaacaacgtccatttgacattcataac
gtccaaataacgttatttgaacgttaaaacaacgttgtgtgccagctggg
aatgcTCTAGATAGAGATATGAAAAGCGTCAAGTTGAAATTGCACGTAAA
GGCAGCAAGTAAAGAGATTTGCACGGAATTAATCTCACACGAGACTTTAA
AACATATGGCTTTTAAACCGGCTAAACATTTATTTCAAAACTTCAGGTCA
ATCGTACCAATTACGAACAACACCAACGTGAATACATGGAAATGCACTTG
GCGCTTGTTATGAAAGAATTGCGTGCCGTAAAAGAGGACAGTAGACAACA
GGTAACTCAGCTCCGAAACGAATTGGACGCGACCAAAAATGAAATTGCAA
GTTTACGAACCGAGTTGGCCGATCAACACCGAATCGATGAACTCGGTCGA
AACTTACGTAGCTCaatggataaaatctttatttccATGAAAGCTCTAGG
AGGCAAAATTCATGACGATATTGTAGAGCTGAATGCCACTATTCGCGAGA
AAGTGATCAGTTTTGATAAGTCGTATGCCCTCTTGGAAGGCAGGCTTGGT
ACCTTTAATCTATGGATTAAAAAACGAGTCGACGAAATGGCTGATCACTT
TCGCGGTCAGGTTTTACAGTATACCGACCTAGATATGGAGCAAGTGTTCA
CCGACAATATTCGTAAGCAAACCGAAAATAACGAGTCGGCGACAAATTCA
ACAGTCGTCTTTAACGACGATTTAAGAGAGAAATTACGACTAACGAGTTA
CTTGAATGAACACCGAGAATTATCGGGGAAACTACATTTCGCATTAGCGA
ATATTCAAGCGGCGCTGTTGCAACCAACGTACACCGAACGGTACCGTGGA
ATGTTGGATTTTATGGAAGTAAACAAGAAGATACGTACAGAGAATGGTTA
TTATGTGATTAAAGTACAAATGTTGGATATCTTTGAAGACGAATGGAATA
TAGTGATTCTGAAAAAACAAACTATGTTTACAGAGtataaaaacacaaaa
catCAAGATTTACTTATTAACCATTACGCTAAAACTATTTCCATTTATTT
CCTGGATGAGGGTGCATTTCTTCATGATGTACCCTCAGTGAATGTGTATA
GCCCGCGTAAGATGTATAAATTAATGTTACCAAGTGTACAAAGAGATGAT
ATGAGATTCAGAATCAATTTTACAACGTTGTCGACTTCGaatttgattca
aaatggtTTTTTGTTGTTGCGAATTCAAGAGGTCCCTAAAATGCTGGTAG
ACACATCGTTCTTCACGCGAAGTACAACTATTTCATGAGTTACTTGTAta
ttaattaaaaacatttatctACTTTGCACATACAGTGAACTCTgacattc
gaatctttctataattcaaactaaAACATTGGTCCTCCGGCTGGAAAGTA
GAAAGTCTTTCCGTGACTTGGTCCCTTGGAGTTCGAATTaccttaatttt
aattttattcttcAAATTTATTGAGAACTCAAAAAAAACCTCTTTTCAAC
TCGAATGGCTTTTCTGATCCCTTGCGAGAATGTAGACCTAGCTTGACTCC
TAATACCTAATTCTTATtaaaaatcgttttttttttttgttcataatTTT
AATGTGCTTAAATATCTGCTTGTCCTTCTTAGTTTGCCTAAAATGTTTGG
TTGTCTTCCTTTAGTTTAGTTTCTACTTGTATATTAATTACAAACATTTA
TCTACTTtgcatatattttatttttatcaagtTTAGCTATAATTGAGGAC
TCAAGAACCTCTGTTCCAAAAGATTTGACGGTCCGTACTTTTTCCAGCAT
TTCTCTTGaggcgaaaaaaaatattccttGACTCttaattaccttaaggg
aacttattttggcgggaactaattttgacgagcggcaaaaatgctgaaaa
cttttaattttggcgagaacttatttttgcgaatgacagcgtaaatctgt
tctattttgccttatttgaagctttttttgtgaactcaagaagttattta
gctaaaataccaaaaaatttaattttagcgagaacttttttttggcgagt
gagcaaaatatataattttggcgaatttagacaaaattcgccaaaataag
ttcccttaaggtagtcacTCTAAAACCTCTCTAACCAACTCCAAGTTCCT
TGCTGTTTGGTTCATGGAGACTTTGTTAGAGACATATTTTCTGTAGATAT
TTTACGTaattttttcaggcttaaatctTCTTGTGATGTTCTTAGTTTTC
TTATAAGGCTTGTGTGACCTTGAAAGATTTCTCAGTTTCAGAGtctcaga
ttgttcttattttgttcataGATTGAGcctcatttttttcttataaaata
ctGCATTATTCCACAACGTATTTTATTCTTCATATACTCTACTAATTCAT
ATTTAAATAGATTGAAATCATgttatcataatttttttgtataagTATTT
CCATACAAAATTctttgtaaaaaactttttgcgaGAGTGGCAAAGGCCta
aaagcataa Run BLAST on NCBI transcript from alignment at scaffold_213:1121416..1123974+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052288 ID=TCONS_00052288|Name=TCONS_00052288|organism=Clytia hemisphaerica|type=transcript|length=2559bp|location=Sequence derived from alignment at scaffold_213:1121416..1123974+ (Clytia hemisphaerica)
aacccagccggcacacaacgtcaaaacaacgtccatttgacattcataac
gtccaaataacgttatttgaacgttaaaacaacgttgtgtgccagctggg
aatgcTCTAGATAGAGATATGAAAAGCGTCAAGTTGAAATTGCACGTAAA
GGCAGCAAGTAAAGAGATTTGCACGGAATTAATCTCACACGAGACTTTAA
AACATATGGCTTTTAAACCGGCTAAACATTTATTTCAAAACTTCAGGTCA
ATCGTACCAATTACGAACAACACCAACGTGAATACATGGAAATGCACTTG
GCGCTTGTTATGAAAGAATTGCGTGCCGTAAAAGAGGACAGTAGACAACA
GGTAACTCAGCTCCGAAACGAATTGGACGCGACCAAAAATGAAATTGCAA
GTTTACGAACCGAGTTGGCCGATCAACACCGAATCGATGAACTCGGTCGA
AACTTACGTAGCTCaatggataaaatctttatttccATGAAAGCTCTAGG
AGGCAAAATTCATGACGATATTGTAGAGCTGAATGCCACTATTCGCGAGA
AAGTGATCAGTTTTGATAAGTCGTATGCCCTCTTGGAAGGCAGGCTTGGT
ACCTTTAATCTATGGATTAAAAAACGAGTCGACGAAATGGCTGATCACTT
TCGCGGTCAGGTTTTACAGTATACCGACCTAGATATGGAGCAAGTGTTCA
CCGACAATATTCGTAAGCAAACCGAAAATAACGAGTCGGCGACAAATTCA
ACAGTCGTCTTTAACGACGATTTAAGAGAGAAATTACGACTAACGAGTTA
CTTGAATGAACACCGAGAATTATCGGGGAAACTACATTTCGCATTAGCGA
ATATTCAAGCGGCGCTGTTGCAACCAACGTACACCGAACGGTACCGTGGA
ATGTTGGATTTTATGGAAGTAAACAAGAAGATACGTACAGAGAATGGTTA
TTATGTGATTAAAGTACAAATGTTGGATATCTTTGAAGACGAATGGAATA
TAGTGATTCTGAAAAAACAAACTATGTTTACAGAGtataaaaacacaaaa
catCAAGATTTACTTATTAACCATTACGCTAAAACTATTTCCATTTATTT
CCTGGATGAGGGTGCATTTCTTCATGATGTACCCTCAGTGAATGTGTATA
GCCCGCGTAAGATGTATAAATTAATGTTACCAAGTGTACAAAGAGATGAT
ATGAGATTCAGAATCAATTTTACAACGTTGTCGACTTCGaatttgattca
aaatggtTTTTTGTTGTTGCGAATTCAAGAGGTCCCTAAAATGCTGGTAG
ACACATCGTTCTTCACGCGAAGTACAACTATTTCATGAGTTACTTGTAta
ttaattaaaaacatttatctACTTTGCACATACAGTGAACTCTgacattc
gaatctttctataattcaaactaaAACATTGGTCCTCCGGCTGGAAAGTA
GAAAGTCTTTCCGTGACTTGGTCCCTTGGAGTTCGAATTaccttaatttt
aattttattcttcAAATTTATTGAGAACTCAAAAAAAACCTCTTTTCAAC
TCGAATGGCTTTTCTGATCCCTTGCGAGAATGTAGACCTAGCTTGACTCC
TAATACCTAATTCTTATtaaaaatcgttttttttttttgttcataatTTT
AATGTGCTTAAATATCTGCTTGTCCTTCTTAGTTTGCCTAAAATGTTTGG
TTGTCTTCCTTTAGTTTAGTTTCTACTTGTATATTAATTACAAACATTTA
TCTACTTtgcatatattttatttttatcaagtTTAGCTATAATTGAGGAC
TCAAGAACCTCTGTTCCAAAAGATTTGACGGTCCGTACTTTTTCCAGCAT
TTCTCTTGaggcgaaaaaaaatattccttGACTCttaattaccttaaggg
aacttattttggcgggaactaattttgacgagcggcaaaaatgctgaaaa
cttttaattttggcgagaacttatttttgcgaatgacagcgtaaatctgt
tctattttgccttatttgaagctttttttgtgaactcaagaagttattta
gctaaaataccaaaaaatttaattttagcgagaacttttttttggcgagt
gagcaaaatatataattttggcgaatttagacaaaattcgccaaaataag
ttcccttaaggtagtcacTCTAAAACCTCTCTAACCAACTCCAAGTTCCT
TGCTGTTTGGTTCATGGAGACTTTGTTAGAGACATATTTTCTGTAGATAT
TTTACGTaattttttcaggcttaaatctTCTTGTGATGTTCTTAGTTTTC
TTATAAGGCTTGTGTGACCTTGAAAGATTTCTCAGTTTCAGAGtctcaga
ttgttcttattttgttcataGATTGAGcctcatttttttcttataaaata
ctGCATTATTCCACAACGTATTTTATTCTTCATATACTCTACTAATTCAT
ATTTAAATAGATTGAAATCATgttatcataatttttttgtataagTATTT
CCATACAAAATTctttgtaaaaaactttttgcgaGAGTGGCAAAGGCCta
aaagcataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052288-exon-scaffold_213-1491911889:1121416..1123974 | TCONS_00052288-exon-scaffold_213-1491911889:1121416..1123974 | Clytia hemisphaerica | exon |
| TCONS_00052288-exon-scaffold_213-1510915933:1121416..1123974 | TCONS_00052288-exon-scaffold_213-1510915933:1121416..1123974 | Clytia hemisphaerica | exon |
| TCONS_00052288-exon-scaffold_213-1575043694:1121416..1123974 | TCONS_00052288-exon-scaffold_213-1575043694:1121416..1123974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1121416..1123974 + |
Blast
The following BLAST results are available for this feature:
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