TCONS_00052281 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052281
Unique Name	TCONS_00052281
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	792

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_213:1053993..1062573+

transcript sequence

>TCONS_00052281 ID=TCONS_00052281|Name=TCONS_00052281|organism=Clytia hemisphaerica|type=transcript|length=792bp
GCAAAGATCGATCATGCACCaattaaaacagaaaaaacttttgggaAATT
ACCCCCGGAAAAGTTCCAGATCCCTTATAACTTGGAGTCCTGGTTAAAAG
ACATTCTAACAGCAAACAAGAATAATTTGAGAAACCTAGACAACAATAGC
TTGATATCACCAACAACTACCACACCAAATGCGATACCACTTCCACCAAG
AACTATTGGAATTTCTTCGGCTGCCGTAGATGCATCAAACGCTGATGTTA
GTACCAACAATGACGATAAGAAGGataagaagaagaaagaaaaagagaag
aagaaacagGAAAAAGCTGAAGCGAAAGAACGACAACGACGAAATAAAGA
ACTCAGCACCTTCGGTCTGACACTTGATATCTTACAATCACGTCTCGGTG
GTATGTACATCTCATCGAAAGATTTTTCTGTCAAAACCAAACTGCACCTC
TCTTATAAAGCTGGCGATGAACTAACAATGGTTGAAGTAGCGAAACAGTT
TCGATTGAAAGGCAAGATGGTAGTGCAAAATAACCGCGATGGAAAAGTTG
GATATGTATTAAAATCGGATTTCGGCATACCTGATGATGATCCTGAGGAG
atCGAACCAGAGCCAGAACCTGTCACACTGACACCAACACCATCTATGAA
CGACGTAGCTACCAGTAACGTTAACATGATCGAAACTTTTGATGACGAGG
GTGACGATATATATGACGAATGTGGAACCGCCCTTCCACCTGTTGTTGCC
GCCCCGCCTGTACCAAACACACCCCGACCACAATTTGCAGGT

Run BLAST on NCBI

transcript from alignment at scaffold_213:1053993..1062573+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052281 ID=TCONS_00052281|Name=TCONS_00052281|organism=Clytia hemisphaerica|type=transcript|length=8581bp|location=Sequence derived from alignment at scaffold_213:1053993..1062573+ (Clytia hemisphaerica)
GCAAAGATCGATCATGCACCaattaaaacagaaaaaacttttgggaAATT
ACCCCCGGAAAAGTTCCAGGTAGGAAATACATCTCATTTGGAAAAACAAA
ATCGAATAAGGGAACTTATCGAATAAAAGAGTGTCGTTTAAGGGAATTTC
TTGTTGATGGTGACTTTCAATAATATCGAATAATNacaaccaaatcaaaa
aagagcttgtaaaactccagcttgtccctccCAAATATTGAGCACTCTTT
TTGAGATTTGAACATATAGCCATATGAATGTAAAACTGGCTTGTTATCAT
TTTTCAGATGAATTATACGATGATGTAGGTAGCTTTCCACCGCCCCCGCC
ACCATCGACCGTCACACAGACACCTGCCCGTCCTGGTCAAGCTCCTACCC
CTCCTGTACCTCTTAACAGGGGGCCAGCTCCACCTGCCCCCATCACTACT
GCTTCCAGAGTACCACCATCCATGTTAAACCGTAATCCGCTGCCGGCACC
GATCGGTCAGCTTCCTGCTCCCACCGGTAGTGGTCCGGCTCCTGAGCAAG
GGGAAGAGATATATGACGATGTAGGTCAGGTAAGTGATAATTCAAGTATG
TTCTTTCCAAACTTCTCCCTAGTCCCTTAGTTCGTTTTTTAATGATTCTG
ATGACGCTtatctgaatcgcagacctctatataTATATGTTTGCGATAAA
GAAATTCTTGTCGCTTGACGATGAGCAGAAGATACCTTTTAATCACAGGC
TAAGCTTTAATGTCATGAGAAAGAATGATAAAAAGccaaatatgtttttt
tttgtcaaaaccaTAAAACATTTGAAACTGATGGCATAGAGTCTCTTTTA
atgaattacacgtttttttataagaacatccaaaattttttaagccttcg
gatgttcttaactttttcagatttaagtctaaaaatgttcttaataagtt
cttattttcgccattttgtgagtaattttgTGCGTTTtactaagaaatcg
ggtgttttagagtccacaacgccttaaaatgctcttaatttgttcttaac
atttttgctatcgaagccttgttcttacatagtttgtttttataaagaaa
catgTATCTAGTCAGCAATaaatttcatatatttttttttcattacagGC
ACCAGTTGCAGAAGAAATCTACGATGACGTAGGAGGCAATGAACTAGCGC
AAACAGGGCGGCCGCCTATCCAACCACCCTCGACTCTACCAATAGCAAAG
ATCGATCATGCACCaattaaaacagaaaaaacttttgggaAATTACCCCC
GGAAAAGTTCCAGGTAGGAAATACATCTCATTTGGAAAAACAAAATCGAA
TAAGGGAACTTATCGAATAAAAGAGTGTCGTTTAAGGGAATTTCTTGTTG
ATGGTGACTTTCAATaatatcgaataatggagcgcaTCGAATAgcagaac
gtcgaattagagagcctCAACTCTACCATTTAGACGTTATTCTTGTCTTT
ATTGCGCTCTCTCTCAGCACTTGTCTAAAGACTCCAATCAAAGATAGCGT
ATATAGATTTGTTTGGGTTTTTAAATACAAAATGTCAGTATTTGGAGCTG
ACACCTAATCTCAATATGCTTTCTTAGAGAATGTTTTGACCGCTTTTTAG
ATCCCTTATAACTTGGAGTCCTGGTTAAAAGACATTCTAACAGCAAACAA
GAATAATTTGAGAAACCTAGACAACAATAGCTTGATATCACCAACAACTA
CCACACCAAATGCGATACCACTTCCACCAAGAACTATTGGAATTTCTTCG
GCTGCCGTAGATGCATCAAACGCTGATGTTAGGTATGATTTTTCTTGTAT
ACTAAAAGGGGTTGAGGGCACTTAGATTAAAGGCTCTGAACATaccaaat
ttttcgattttacaccaacttaaatggcaatttctgcattttaaaaagat
taatgtataactttataactttatatgtcctgttaaacctaccttttaag
aatttaaaaatcgaaaaattgaaatgaaaaaattaaatgaagaagaaaac
gaagagtttttcgaagaagagtatttcacctttcaaagccctaatctcgg
taaaaatcaaacattttgaattctttttggtTCAtttctatttagtatct
aaaaatacaatttcgaaaaatttttgtggaagtatctttcctttaaaatc
tccaaaaacctaatttttggcaattttcttcaccaaatttccatacgaaa
acagctattttccgaaaaaatctaaataaagaaattatttgtcattaact
tagaaaaagtttgaaacaataaaatgatttccccgaggtgattaggcttt
ttttgtgaaaagaatatgaatagcgtcgttatgacgtttaaTTAAGGTCC
CTCCaagtaattacttaaattcactttttcaaaggcagtttgttcttaaa
catgtcaaagaagcgaaaacataaggttttatcttcaaattctaaaattg
atttttcactttgaccagagcccttaaggtgCAATTTGTCTCATGACCGG
AGCCCTCAAACGATTTACAAGCCGAAACATTCAAAATATAAAGCGGAAAA
CAAGCTCCGAAAAAGTGAATCTTTTAAGATCATTCAAATTAAAATGATGT
GATCATTTTTATGTACCTGATAATGTATGAACACCGAAAAGTTTCgaaag
aaatgaaattgaatttttaaatttttgttttaatccaATATGACATGGCA
CACTTTGACATAAGGTCATTTTTTCTTGTATGGCTTAAATCTTAAGTTAA
AGATGATGcatatttttggaatttgttttcTGCTTTATATTTGGATTAAA
TGGGTACCAGTTATGTTATAATGTGTAAGGttttactttactttacttta
tgggcagaaagtttcgcgatgCGAATTATGGTttttagccgaaatttcac
agatagaactttcgcgaattcatataaaatttacctttttttgttacaaa
aactcataaaacacgcaaaaatttagcaaacagtgcaaaactgagtagga
aaatttatttttcgcgaaaaaaaaactttcgcgtttttcaggtttaattt
cttacctggcagaaactttcgtggAAAAGGATTAAaatcgcgaaaaacgc
gaaagtttctgcccttaaagtactCAGTCCCGGGGTAGTccgaatcgcag
acctctacaaaaccgcaggtagtataaGTAGTAAGAAACCGTTAGTGGGA
GCCAGTAGCCTAGTCCCGGGAGTACTAGGGTTGCTGACGGGTATTTGCCG
CCTGACTTTTAACTTTTGGACCCTTTGCGGTACTAAAAAGgtggaaaaaa
ggaaattttcacTATCCCTTATTGGGACTCATTTTACCCAAATTCGTTCt
gaggttttaatttttttagattttttcaaccCTTACAGGGACTACCAGGt
tccaaaaaggcaccctaaAGGGCGACACAAACCTGTACAATTCCAGTAAA
AATGCAGAATTTTAAATCTTTGCTAAGGGTAAATAAGATAGAGACGCGTC
CCCGTGAAAGCTTGGGTAGTCTGAAAACTCTTCATAAActcgaaaatgaa
aaaaagagcaGCGAGCAAAAGGTGGGTGGGTGGCCTTTCTACCTAAATAT
GAGGccctttttagagattttttgttttgggaACCCCTCACTTTATTAAG
GTTGATGCAGTGGTTCAATCACTGNttttaatttttttagattttttcaa
ccCTTACAGGGACTACCAGGTTCGAAAAAGGCACCCTAAAGGGCGACACA
AACCTGTACAATTCCAGTAAAAATGCAGAATTTTAAATCTTTGCTAAGGG
TAAATAAGATAGAGACGCGTCCCCGTGAAAGCTTGGGTAGTCTGAAAACT
CTTCATAAActcgaaaatgaaaaaaagagcaGCGAGCAAAAGGTGGGTGG
GTGGCCTTTCTACCTAAATATGAGGccctttttagagattttttgttttg
ggaACCCCTCACTTTATTAAGGTTAATGCAGTGGTTCAATCACTGTGCCA
GCTTGAAAGCGGTCTAGGTTGGAAATTCCGAGTTACGGAGATTGGTTTAT
AAGCCATTGTTAGCTGAAGGAACCAGAAAAGTAGTTCGAGTTAAGAGtct
cgagttatgaagactctGCTGTACCGTGTGTTACCTCACACTCAAATATC
TAACTTTATGGATACTGGCTTACAAGGGTTTGTTAACTAAAGAGACCAGT
AAACTTTCccgctcgaccaatcaaatcacagacacgtgaccataatattt
tgatttgcgtaGTATTGGAGTATGCCTTTAAAAACTAGTGAAAGATtagc
actgcaacgacttcttctaAAAGCGCTAATTTTACGAAAGGAGCAATGCG
AGGATTTAGCGCCGAAAGTGGAGCGATCTGAGGGAACACGAGAATTGGTG
GTGTCATGTAGTCATGCACGAACCACTAAaaaacactgaattttcaaaaa
tgttaagCCATATAGTGACCAATTTAGTAGACCGCGCGCACATTTCAACA
AGCAAGATTATACTTCGTGGCATTGTAATAATAtcgaaattggcccgctc
cctttagagctttaacgtgggcggccgccaatccgccatcggaatatcag
ataaggcATTGTAATAATATCGACGATTTCTTTCGCATAGTACCAACAAT
GACGATAAGAAGGataagaagaagaaagaaaaagagaagaagaaacagGA
AAAAGCTGAAGCGAAAGAACGACAACGACGAAATAAAGAACTCAGCACCT
TCGGTGTAAGTGAGCTAGATTTCGGGCAACATTGATTAACCTTGATTAAC
GAGCAAACTAGATTAACGAGCAAACTAGACGAGGAAACTTAAGGCAATTT
AACCCTATAGCACCTTTGTATCTTCCACAGTAGACACCCCTTATGTATTT
AATTAACCAAAAACTTCCTCCATAGTTCAATGAATCAatcgtgtgaaaat
gataattatactaGATGAAATTTATTGGTAATTTCCTGGTAAGGGTTGTA
AAAATGGTAGAGTCATTCCTATTGTAATCCCCAGTTGGCACCCCTATGTA
TTTAGTTAACCAGAATTTTTCTCCATAAGCGAAGTCACCAGGTATACAGG
GTTAGGATACGCTAAGGAAAACTATAAGGTCGTGGTCGTGATGTTGTATG
TACAAGTACATTTGACGCTCTCTGAATCGGGGAATGTGATTTTCATCAAT
TAAGGCagcatatcgaatagtagagtttcttttatgagagtttcttgtgg
ACGGTAACTTTCAAtaattatcgaataatagagcgtatcgaatagtaaac
gtcgaattacagaGCGTCGACTActactttttacaaaaacaatATTATCC
CATAACAGTTATTGTATCTTCATAGTTTAACAACTAAGTTACTGTCTATT
CGTATTATACATACGACTCCAGGTTAGATTTAGAgcagagaaaaaatatt
tcaagaactcgaaaaacaaaataattctaCTACATGTGACCGGTTAAAAA
TGGTACTGCTTAGTCGCATATAGCCTATACTAGatgtcacccgcgttttt
tctactcaatatctattccactttgcgactttttcgaatgttttgagccc
acgTTTTCGGGCTCagaacattcgattttttgacgtcacttttaactttt
aaaGCTCATGCAGTagcgaaaaaatcgaatttgcgtcaaagcacttgaaa
ggatTCTATTTTTCCGAAATCTTCAAAGTGGAACTAACTAAGAAATGGAA
TGAAatatcccggtttttggtgaggtactcGCTAAGCCACATACTACTTA
TTCGAGATTCAACTGTCATGAGTTTCGCGATTCTGAGAAACAAATTGTCA
TTTGAAGAACTTTCACTTTAAAAAAACCACTTTCAGATTTTCTCAACTTG
ACTTAACTtaacttttttgacattttctgtTCGGAAATGGCTATTATatc
ttcagtttttttatcTTGTAAAATTATCTCTATAATAGATGTCACTTCAC
TTCGtatccatagatttataaagcccgaagggctagatggcgtactcttg
ctgaaaagtgtgcaacaatattttttccgatattcattttttttgcctgc
gatggctcaAAGCATgacatctagcctttcgggctttataTCTATGTTCA
TATCTCGGTCAcactctcaaaaaaaatttatctccCAAGTGTAATCAACT
CCATTTCTTATCTCTATAATAGCTATCACTCGATATCTTGGTCACTCGGC
ATTTTTATCTCCCAAGTGTAATTGACACCATTTCTTATCTCTACCATAGC
TGACACTTGATATCTTACAATCACGTCTCGGTGGTATGTACATCTCATCG
AAAGATTTTTCTGTCAAAACCAAACTGCACCTCTCTTATAAAGCTGGCGA
TGAACTAACAATGGTTGAAGTAGCGAAACAGTTTCGATTGAAAGGCAAGA
TGGTAGTGCAAAATAACCGCGATGGAAAAGGTACATATATTCGTGCTACG
CTCAGACCAGAATAATTTTATATTCATCTATTAACATAGGTCATTTTacg
gtcgaaatggatcatgggtaatcaggactgattgcgccccgATAACGGTT
TCCCGTTGACTAGAcgcaaaattcttcaaaaaatttcaaaaatttggacc
aatTGTCAGTCGTCATTAGCgtgcagtggtcctgattacccattacgctt
tgcgactgtgaaatggcctattagGGCCCGGTTAGTTTTTTAGGGGACTT
GTAATGAATTTACTGGATTTACACGGGAAATTTCTTCTCGGTGCGTGGCA
TTTTTTACCCTTAACATCGACGAAGTCTTGCTACCGTTTGTTACGGTTGG
ATGAATTTTGTGCCTAGACTAGTGAGGGGAATTGAACGAGTCTCAAggtg
attggcttaggtttacCCTTAAGGGTAAAGTATTTCTTTCAAGAttctga
aagtttgaaaaatgtatATTATAACAATgagaaaaaggaaattttaggGG
CAAAATTTTGGAAAGGGAGATTCGAGTGGTattgatatattttttgttct
ttcttttacAGTTGGATATGTATTAAAATCGGATTTCGGCATACCTGATG
ATGATCCTGAGGAGGTTAGGAACTAGTTCTTAGACTGTTTTAAAAGTCTA
GCCACGTAGCCACCAACGTAGCCAAATTATCCaagatcttattttttcaa
taaatttcccAAACCGAATATGTATTTGATGATTTTGGGCGGGAACTcag
atttttacattttacatccCTCCCCCCCTGCTTCcctccaaaacaaaaga
aaatctgatttttcgttctttttctccgaattataaaatttcattttagt
gCATTTTCCGGCCATATTTCTTAACTTAAATCGACTCAAACTTCAGCTCC
CCTCCCGACCAATATCAAAAtacttcctacggcactgcaaACTatgttat
tcttattttttcagatCGAACCAGAGCCAGAACCTGTCACACTGACACCA
ACACCATCTATGAACGACGTAGCTACCAGGTATGATTATTCAACCCAAaa
atcgtcgcatcaaaattaaaaaagctttaagtccatttttgttgttttga
gaaaatcgactttgaatcatttttttttaaatcctgaaaaacctttaaca
tttgaaatatttttgtgttaaaaaagccaaaatcgTTTCCACGCTGGCTT
TTTTGGCCTAATCTGATGcgacttaaggcttttttaaccgtaaaaacaaa
gtgaaaagtaaattcttatttttctaaaaatttaaaatcaggcCACTTTA
AgctctctaattcaatttcCAATAAGAGAGCGCATCGAATTGTAGAGCGT
CGTTTAGCAGAATTTCTTATTGACGGTGGCTTTCAATACTATGTTATTAT
GGAATAATGGACCATATCAAATAGTAgaaagtcgaattagagagcgtcaa
ctgtataagCAAACAATAGAAGATTCCGCAGTgaactttctttaaattga
accactctgtaattcgaacttccTATTTGAGTTCAAATTAGCGAGAGTTA
GCTTTACgtacccaggacattcttattccaacccccccccgcttgttttG
AGATTTCTACCAAcccccagctattaggtacccgagagtagacgatgcta
tcgtccatATACTATAATATATTATCaagatataacatagtttgtatact
tTAAAACGTAATATATTGCGCGGCGGaaaatagagtctgtgtttacgtTT
TTAAGACAACAGCTACCCCCGAAAAGActtcccgtcttcacgtttgttcc
tcttagatgaaactcgtcttagactatagcatagtctacccGAGATTATT
AACGAAAAGTCTGATTCGTGAACTATGTGTCCATCTTTTTGTGTCTTATT
TCAGTAACGTTAACATGATCGAAACTTTTGATGACGAGGGTGACGATATA
TATGACGAATGTGGAACCGCCCTTCCACCTGTTGTTGCCGCCCCGCCTGT
ACCAAACACACCCCGACCACAATTTGCAGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033077	XLOC_033077	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_213	supercontig	scaffold_213:1053993..1062573 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.274954	0.185439	0	0	9.0088	7.69878	3.5498	7.27783	2.51943	3.70241	1.75957	0.858851	6.30166	5.93107	4.21659	4.55164	0.64115	3.73065	9.37738	8.52336	0.561237	1.59675	0.0529933	0.221926	17.3515	18.3886	0.788238	0	1.09401	1.50145

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00052281 vs. Swiss-Prot (Human)

BLAST of TCONS_00052281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00052281 (transcript) - C. hemisphaerica