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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052278 ID=TCONS_00052278|Name=TCONS_00052278|organism=Clytia hemisphaerica|type=transcript|length=1806bp
ACAAATTAGGAACAATTTCAGatattaaaggttttgcttttaaataagag
tgatatcgttttcttactcatcaatcttaattcacaagctttttcacatt
ggattgacacatatgtggagcaagattggtcagaaagaggaaaattaaaa
catttttttgcttatgtcagcataatataacaataggcagacactgtcct
gatatgaaacatgtgtctgatatgaaacgaacacttatgtaaaaataaaa
cctttaatggaAAAATGCTAAGTTTTAAACCCTTTTTAAGCTCGCAAACT
TTCCGGTTCTAGTAAAATATATTGCCTAAAATTATTTTCCTAATTGAGAC
CAACATTTAGCTAGAACATTACATTACTTCACGGAAACATCACGGTTTTT
GCCAGCAGTGACAAATCTTAAGCTACAGAAAAACTGTTCATAAAttacca
ctactggcaaaaaccggggtgttTCCGTAGAAACACGACGTCACTGATGT
CGAATTCACCACGTTTCTTCTATAAAAGTTAGTAGATGTGTTTTCTTCAA
AGTTTCATGTCAGCTTAGcgatcaaaaataaatcatgtaTTCATATCATA
TTTAGAATTCAAAACTTCCTATAACATCCAATTTTATAAGATTGGCATCA
TGTCCACAATATTATACTTGTTTCCTGGGAAGTTGGAACGTGTTTGtagg
taaaattttctgaaattgaaATTCTGTAATCCAGAACCAAAGTTTGATAA
AATCTATAAACGAAATGTCTCCCGATCGACCATCGCAGCCAGGTGATTAA
CGACAATTTCTGCAGCTGATTGTCAAAAAATCTGACCGCAGTTTCAACTG
GACCAAGTTAAAACATTCCTAACATGTTCTCTATCCTTTTGCTTAGTCAT
CAGTCAAATAATTACCTACTGGAACAATTACGTCATCATAGGTTGGCGGT
GGGTCGTGTATACCAGGCGGAGGTGGTGGTGCTTGTCTTTTGAGTGAAGA
CTTTCGCGGAGTGTTTTCGTAGATACTTTCTGGTGGGGGTGGCGGAGCTG
ATTTCGGTTTTATGACTGGTTTTTGAGGCGTGACGATCGCTACTTCTACT
TGATGGGCGTGTGGCGGTGGGGGCGGATTATTTGAAGGTTTTATTATAGA
ATTCCGTGGAGATATTGTTGCAGGTTTCACAGCAATTGGTGGTCTTGTAA
TCGAATCAGGACGGGGCGGAACGCCCGGTCTTTTATTTGGTAAATTAGGC
GCTGATGGGTCGGTTCGTATCGACGCTGATGGACCAGGGCCTGGGTCACG
GGATTGCTGACCAAGACGTTCTAAAGTCTGTATTTTATTGCGAACATTGA
CAAGTTCTATGTTATTACCAGCAGGGCTTTCAGTTGTAGACTGATCCATT
AAATGTGTCGTTTCAGTTGAATTTAAGGCTTTCAGTTGTAGACTGATCCA
TTAAATGTGTCGTTTCAGTTGAATTTAAGTCTTTCCCATTTTGAGTGAAA
TATGCTTGTTCGTCGAAATCTTTGCCCTTGTTACATAGATGGCACATATA
CATTGTGAATGAAACTAGACATAGTAAAGCAATGATGGCAACAAAAATGT
ATAAAACAACGTAAAATGTCGCCATGTTTATTTCTGATAATGTTATTCCC
AGAAAATTGACGACTCCAATTGACGGTTTCAAGTCTCCTGGCGTTGAAGT
TGTTTAAGAGTATAACCAGTTAAGTAACAAAATATTCCATTTGTTAGAAA
CTACGTATTTTTCTATATAtttcaattatatttttatttcatatttttta
tctGAA Run BLAST on NCBI transcript from alignment at scaffold_213:963431..965993+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052278 ID=TCONS_00052278|Name=TCONS_00052278|organism=Clytia hemisphaerica|type=transcript|length=2563bp|location=Sequence derived from alignment at scaffold_213:963431..965993+ (Clytia hemisphaerica)
ACAAATTAGGAACAATTTCAGatattaaaggttttgcttttaaataagag
tgatatcgttttcttactcatcaatcttaattcacaagctttttcacatt
ggattgacacatatgtggagcaagattggtcagaaagaggaaaattaaaa
catttttttgcttatgtcagcataatataacaataggcagacactgtcct
gatatgaaacatgtgtctgatatgaaacgaacacttatgtaaaaataaaa
cctttaatggaAAAATGCTAAGTTTTAAACCCTTTTTAAGCTCGCAAACT
TTCCGGTTCTAGTAAAATATATTGCCTAAAATTATTTTCCTAATTGAGAC
CAACATTTAGCTAGAACATTACATTACTTCACGGAAACATCACGGTTTTT
GCCAGCAGTGACAAATCTTAAGCTACAGAAAAACTGTTCATAAAttacca
ctactggcaaaaaccggggtgttTCCGTAGAAACACGACGTCACTGATGT
CGAATTCACCACGTTTCTTCTATAAAAGTTAGTAGATGTGTTTTCTTCAA
AGTTTCATGTCAGCTTAGcgatcaaaaataaatcatgtaTTCATATCATA
TTTAGAATTCAAAACTTCCTATAACATCCAATTTTATAAGATTGGCATCA
TGTCCACAATATTATACTTGTTTCCTGGGAAGTTGGAACGTGTTTGtagg
taaaattttctgaaattgaaATTCTGTAATCCAGAACCAAAGTTTGATAA
AATCTATAAACGAAATGTCTCCCGATCGACCATCGCAGCCAGGTGATTAA
CGACAATTTCTGCAGCTGATTGTCAAAAAATCTGACCGCAGTTTCAACTG
GACCAAGTTAAAACATTCCTAACATGTTCTCTATCCTTTTGCTTAGTCAT
CAGTCAAATAATTACCTACTGGAACAATTACGTCATCATAGGTTGGCGGT
GGGTCGTGTATACCAGGCGGAGGTGGTGGTGCTTGTCTTTTGAGTGAAGA
CTTTCGCGGAGTGTTTTCGTAGATACTTTCTGGTGGGGGTGGCGGAGCTG
ATTTCGGTTTTATGACTGGTTTTTGAGGCGTGACGATCGCTACTTCTACT
TGATGGGCGTGTGGCGGTGGGGGCGGATTATTTGAAGGTTTTATTATAGA
ATTCCGTGGAGATATTGTTGCAGGTTTCACAGCAATTGGTGGTCTTGTAA
TCGAATCAGGACGGGGCGGAACGCCCGGTCTTTTATTTGGTAAATTAGGC
GCTGATGGGTCGGTTCGTATCGACGCTGATGGACCAGGGCCTGGGTCACG
GGATTGCTGACCAAGACGTTCTAAAGTCTGTATTTTATTGCGAACATTGA
CAAGTTCTATGTTATTACCAGCAGGGCTTTCAGTTGTAGACTGATCCATT
AAATGTGTCGTTTCAGTTGAATTTAAGTCTTTCCCATTTTGAGTGAAATA
TGCTTGTTCGTCGAAATCTTTGCCCTTGTTACATAGATGGCACATATACA
TTGTGAATGAAACTAGACATAGTAAAGCAATGATGGCAACAAAAATGTAT
AAAACAACGTAAAATGTCGCCATGTTTATTTCTGATAATGTTATTCCCAG
AAAATTGACGACTCCAATTGACGGTTTCAAGTCTCCTGGCGTTGAAGTTG
TTTAAGAGTATAACCAGTTAANCATTCCTAACATGTTCTCTATCCTTTTG
CTTAGTCATCAGTCAAATAATTACCTACTGGAACAATTACGTCATCATAG
GTTGGCGGTGGGTCATGTATACCAGGCGGAGGTGGTGGTGCTTGTCTTTT
GAGTGAAGACTTTCGCGGAGTGTTTTCGTAGATACTTTCTGGTGGGGGTG
GCGGAGCTGATTTCGGTTTTATGACTGGTTTTTGAGGCGTGACGATCGCT
ACTTCTACTTGATGGGCGTGTGGCGGTGGGGGCGGATTATTTGAAGGTTT
TATTATAGAATTCCGTGGAGATATTGTTGCAGGTTTCACAGCAATTGGTG
GTCTTGTAATCGAATCAGGACGGGGCGGAACGCCCGGTCTTTTATTTGGT
AAATTAGGCGCTGATGGGTCGGTTCGTATCGACGCTGATGGACCAGGGCC
TGGGTCACGGGATTGCTGACCAAGACGTTCTAAAGTCTGTATTTTATTGC
GAACATTGACAAGTTCTATGTTATTACCGGCAGGGCTTTCAGTTGTAGAC
TGATCCATTAAATGTGTCGTTTCAGTTGAATTTAAGTCTTTCCCATTTTG
AGTGAAATATGCTTGTTCGTCGAAATCTTTGCCCTTGTTACATAGATGGC
ACATATACATTGTGAATGAAACTAGACATAGTAAAGCAATGATGGCAACA
AAAATGTATAAAACAACGTAAAATGTCGCCATGTTTATTTCTGATAATGT
TATTCCCAGAAAATTGACGACTCCAATTGACGGTTTCAAGTCTCCTGGCG
TTGAAGTTGTTTAAGAGTATAACCAGTTAAGTAACAAAATATTCCATTTG
TTAGAAACTACGTATTTTTCTATATAtttcaattatatttttatttcata
ttttttatctGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052278-exon-scaffold_213-1491911889:963431..964856 | TCONS_00052278-exon-scaffold_213-1491911889:963431..964856 | Clytia hemisphaerica | exon |
| TCONS_00052278-exon-scaffold_213-1510915933:963431..964856 | TCONS_00052278-exon-scaffold_213-1510915933:963431..964856 | Clytia hemisphaerica | exon |
| TCONS_00052278-exon-scaffold_213-1575043694:963431..964856 | TCONS_00052278-exon-scaffold_213-1575043694:963431..964856 | Clytia hemisphaerica | exon |
| TCONS_00052278-exon-scaffold_213-1491911889:965614..965993 | TCONS_00052278-exon-scaffold_213-1491911889:965614..965993 | Clytia hemisphaerica | exon |
| TCONS_00052278-exon-scaffold_213-1510915933:965614..965993 | TCONS_00052278-exon-scaffold_213-1510915933:965614..965993 | Clytia hemisphaerica | exon |
| TCONS_00052278-exon-scaffold_213-1575043694:965614..965993 | TCONS_00052278-exon-scaffold_213-1575043694:965614..965993 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:963431..965993 + |
Blast
The following BLAST results are available for this feature:
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