TCONS_00052263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052263
Unique NameTCONS_00052263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052263 ID=TCONS_00052263|Name=TCONS_00052263|organism=Clytia hemisphaerica|type=transcript|length=1788bp
tttttagaacaaaattCACTGAATCATATAAAAATAACATAATACAATAA
ATGGCAGCAGCAAGGTTCCTACTTGCAGTAGAGAGGGGTCTTCCTCAAAG
ACTGGTGCCATTATGGAATCATCCAGCAGGCCTACAAACAATCCATTTCT
GGGCTCCAGCTTTTAAGTGGGCGTTGGTGATTGCTGGTATTTCAGATATT
GCCCGGCCACCAGAGAAATTGAGTTTCTCACAATCTTCTTCCTTAGCTGC
CACTGGGTTGATCTGGAGTCGTTATTCTACAGTAATCATCCCAAAGAATT
GGAATTTGTTCAGCGTCAATGTCTTCTTGTGTGGTGTGGGTGTCATGCAA
TGTTCCCGCATTCTTATgCATCGAAAGAAGATGGAAGAGGAAGGCCAAGA
ACTACCTCCATTGTTCTAAATGGAACATGATCAACAATATTTGTTCAGTT
CTGCATTTCTAGAGTAACGAAACAGTACATCAAGTTAAGCTTCATGAATC
TAATGAAGCTAAACAGAAAACAACATGGATGAGTTATAATCACAAGACAC
AAAACACTATGGAATACTGCAATTTATTAATAATATGGTTTATCCAAGTT
TTTACATTCGTTTTTGGTGTACGCGTGGAAAATAATGGAGGAATATTTCG
AAATGACAAACCTGTTATCGGCATCCCGGCTATGTTTATTACAGATCCAA
CCTACCATGAAAAATTTCCTCGTTTTGTCAATAGAAGTTATATTGCTGCA
TCGTATGTCAAATATCTTGAGTCAGGTGGTACTAGAGTTGTCTCCATACC
CCCTGGATTAAATGTTGAAGAAGAGAAAAAGATATTTGATAACATTAATG
GTTTGCTGTTTCCAGGGGGTGAAGTAAATTTAGTTGATTCTGAGTATTAC
TACTTGACAAAACGACTTTTCAATCTTGCGAAGAAATCAAATGATCAAGG
AAAACATTTTCCCATTTTGGGGATTTGCCGTGGAATGCAAGCTATGGTAG
TTCACACTGTTGGTAATTTAACGCCACTTTCCTTAACTGATGCTCGGAAT
CTTCCTGCATCGCTCGAATTCACCCAAGCCGCCATTCGGAGTGTTTTATT
GAATGAAATACCTGAGAAATTATTAGAAGAACATAGGACTCGAAATTTAA
CAGCACATTTTCATAAATATGGGATTGAACCAAAGACTTTTCAATcgatg
agaaaaataaaaaatgattttcaaatcgTAGCAACGAGCTCTGATCGAAA
GGGAATCGAATTTGTTTCTATTTATGAAGgCAAGAAGTATCCTTTTTACG
GACTGCAATTTCACCCGGAGAAGATCATGTATGAGTGGGCTGAAAAATTG
AACGTGCCACGTAGCTTAGATGCCATCAAATTCTCTCAACTTATGGTGGA
CAATTTTATCGAGGAGGCTAGGAAGAATACTCACCAAATAAACTCTAAAA
TCAAAGAGAAATATCTGATGACTAAACAGCAACCGATAGACACGGTGTTT
ATGGAGCATAGTCATTCTCCGTTTCaacaaatttatgtttactAGTTGGT
GATGGTTCTATAAATGTTGATCTTTCTTTTCACTTTTGTATCTTCTGCTA
ATAAAAATTGCTCATCGGATTTGGTGAAAGCTAcgtgttttttcttataa
agaacattttttaataccttaagggaagaaagtTTGGCGGGAAGTTAATT
TGGTGGAATTGgcggatttggtcaaaatccgccaaactaagttcccgcca
aatttaattttttccgtcatccgccaaattaaattccc
Run BLAST on NCBI

protein sequence of TCONS_00052263-protein

>TCONS_00052263-protein ID=TCONS_00052263-protein|Name=TCONS_00052263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MSYNHKTQNTMEYCNLLIIWFIQVFTFVFGVRVENNGGIFRNDKPVIGIP
AMFITDPTYHEKFPRFVNRSYIAASYVKYLESGGTRVVSIPPGLNVEEEK
KIFDNINGLLFPGGEVNLVDSEYYYLTKRLFNLAKKSNDQGKHFPILGIC
RGMQAMVVHTVGNLTPLSLTDARNLPASLEFTQAAIRSVLLNEIPEKLLE
EHRTRNLTAHFHKYGIEPKTFQSMRKIKNDFQIVATSSDRKGIEFVSIYE
GKKYPFYGLQFHPEKIMYEWAEKLNVPRSLDAIKFSQLMVDNFIEEARKN
THQINSKIKEKYLMTKQQPIDTVFMEHSHSPFQQIYVY
Run BLAST on NCBI

transcript from alignment at scaffold_213:746222..751875+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052263 ID=TCONS_00052263|Name=TCONS_00052263|organism=Clytia hemisphaerica|type=transcript|length=5654bp|location=Sequence derived from alignment at scaffold_213:746222..751875+ (Clytia hemisphaerica)
tttttagaacaaaattCACTGAATCATATAAAAATAACATAATACAATAA
ATGGCAGCAGCAAGGTTCCTACTTGCAGTAGAGAGGGGTCTTCCTCAAAG
ACTGGTGCCATTATGGAATCATCCAGCAGGTTTGAAGTCATTTTATTTgt
gattttcctttttgttttaCTATTTTTAGTTGAACTGTATCAAGTCAACG
TATACGTTAGTAGGTTGTACGTAGTGCGTTATCCAAGAACAATGTCAATT
TAATGTCCATAACAACTGAATAATGTTTATTGATGTTGTGTCGACGTTTA
AACAACGTCATGTTAGAGCTGTATTCAGTGCATGCTAACAGtgtcttcaa
aatttcattttcttgttcGTTCCAGACGACTTACTGCCACATTACTTCAG
ATGTAATCTGCTTTCTTGTTTGATTTGAACTTTTCTATAAATACAAAATT
CTCATCtctcttttttgtttctttacagGCCTACAAACAATCCATTTCTG
GGCTCCAGCTTTTAAGTGGGTAAGTGGGTAAGCTTAAATTTTGGGTTCAT
TGAAGTGGGATTATTCCATGGGGATTTGACCAGATTTGACAAGTTTTTAC
TAAGTTATacgaaaaattcatttttcgtGCTCGTGGTATTTTATCAATCT
GATCAACACTTAACCTTTTCATAATTTAAATTACAACTATATATTTTAGC
GTGTATTTAATTCCGCGAGGTTTTAGGCAAAATCTCGAAAAATTTAGTTc
tgtttgaatttttcaaaaacGCAAAATCACGAAATTTTTGAAAGGTAGAA
GAAAAATGATTTTTTAAGGGATCAGTGATATTTTGTTACAGTTTCGATAC
TATTTTCTGCACCTAATACGTTTTATTTAAGCAAAACCAGTCTTTTTTGT
TTTACTTTAATCGTAGAAATTTTAACGAGACTAATTTTAGCGTTTTAGCG
AGTTTTCCCTATTTTCGCTAAAATAAATCTCGCTAAAACACGCCGAATCG
CCAGATCGCTAAAATTTATCCGCGTGAAATTTCTGGTTATATTGCCTTGA
TACATTTTCATCAATAGGAAGGGTTTTAGTGCAAAGAAATGCTAGAAAAC
GAATTCAATCAATAATGTAATACGAGTATTTGCTAGAATTTATCCACGCA
Aaatttttgaaatcgtgattcgctaaaataaatccaaaaaaaatcaagat
tttcctgactcgctaatatacgctaaaattagtctcgctaaaatttctac
gatgaAAGTAacctttttcttgaaaaatatccAACTTGGTGAATTTAATA
CACATGAAAAATTCCAGAAATTGGCGATTGCGAAATTTAGTACCTgcgaa
aatatatacacttAAGGTACACTCTTCTTTTACAGGCGTTGGTGATTGCT
GGTATTTCAGATATTGCCCGGCCACCAGAGAAATTGAGTTTCTCACAATC
TTCTTCCTTAGCTGCCACTGGTATGGAATGGTTTTCATTTTGATGCGTAT
TTCTAAGAATTCAATATTTTAGAGTGAAAAATAAGTGTTTACATGTTCTT
AAATGCATTAAAAACCTTATTTAACAGGCAAATTTTGAATTAGTTTTTGT
TAAAACACTAGTAAATTTGAGTTTGATAATCCTGAGTGGTCCAGAAATCA
TACTTTCTCGTCAATTAACACCTATGTATTTTCTCATTTCTTCACAGGGT
TGATCTGGAGTCGTTATTCTACAGTAATCATCCCAAAGAATTGGAATTTG
TTCAGCGTCAATGTCTTCTTGTGTGGTGTGGGTGTCATGCAATGTTCCCG
CATTCTTATGTAAGCGTCCTTCTTCTTCATTCTCTGCTTAAGAAGTTATT
TGTTTTCAAAGCATTTGCATCATGTTTTGTAGCAGTGCTGTGTTTTTATG
ATTTCTTGATCCATTCAAATTTATCCGATGAAAATTGGATGTACTTCTGG
TGAAAAAAGATCtgttaaaacagttaaaagaaGCGACAAAGTTTTGTGTA
CTTTTTTGACTTTCGTTAGACTCTCATTTTTTGTACTTTTCGATTCGTTT
TTCGAAAGTTTGCTTGTCCACTATGTGACATTAATGGGGACActattcga
atcaattttgcgccattgtcccagggacataatcagcgtgtcttttgggt
atttccctcacgttttgtcccatgaaacaaaaaaagaaacaattagCATT
AGACatgcactttttttcttgtgttggtgggatggagcatgttgcgtTGC
ACCAACGTGAAAAAACTTCtggtgtccccaagccttaagacACAGcgtat
ttcttttctttcttaggCATCGAAAGAAGATGGAAGAGGAAGGCCAAGAA
CTACCTCCATTGTTCTAAATGGAACATGATCAACAATATTTGTTCAGTTC
TGCATTTCTAGAGTAACGAAACAGTACATCAAGTTGTAGGTTTATTtttt
tccataatGGCCAGCTTTTATTTTGCATTGAGAAAGAATTTGTGTAATGG
GAGACTACaggaatttgatttttgaaaatcaatgtTGAGATGCTGCAACT
TAATTGTTTCTAATTTATTTGGAAGAGAATttgaaataacttttacaaaa
ctTTATATATTATTATACCTTCAAGCTGGCTACTGCTGTTTGTTTACCTT
AATAAAGGATAATcagatgttttgaaatttttgacctAAATAAACATTCT
GTGGTCCTCCAAATATTTTGGCTTTACTTCTTTCTAACGACGGCACTATT
acaatttgaaatctctaaatacggttcttacgttgaaattttATAGTTTG
CTTGCTTGTTTGTCATAAACTTGTACCATGATGATTttgaatttataaaa
tattttgacaaaatagttgaattttttgctcaggacCATAAAAAATCTGC
AGCCCAAATATATGAAACCATTTTATGATACATTTtaatgaaagtaattt
tttcatgagaaaattcttcattttcgtGCTCTTTCAGAACCTTGGACATA
ATGTCTGCCTCAGCGATTTTTGAGCGGTAATCCATTTGAACTATTTTTAA
AATCTCGTATAATTCAATTCAGCGTAATCTAAAGCTGTTGGGGGTAACCC
TCCACCGTTTCAATGGGGGTTTTACTTATTTTCCTATTAAATAGTAAAAT
TAATTTGagtgtttttaaaatatttagttTATATTTATACACGCAGCAAG
AATTAGACATTCATGCCTTTTGTTTAGGTATGATCTTAGAGaaataaatt
ttatactttAGTATGTGGATAATTGCAACAAATTATTTTCCCatcctttt
tcttttatttattcttAAGAGATTTCGGTTATGTGGtatgtttttaaatt
aaattttaagcCTTCTAATGAAATTAAACGAATCATTCTTTTCAgtgttt
ttaagaaattttttccattctcTTTCAGAAGAATAGGTATTAAATGCAGC
GTGtttcaaaagtgaatttttgaataCTGTCTTTTTATCTGATTTACTCA
TTTTATGCATTGATTCTGTTAGTgtagcaaatttcaaatttgataaattt
gttttcttctttgtcTACCTCTTTTTAGAAGCTTCATGAATCTAATGAAG
CTAAACAGAAAACAACATGGATGAGTTATAATCACAAGACACAAAACACT
ATGGAATACTGCAATTTATTAATAATATGGTTTATCCAAGTTTTTACATT
CGTTTTTGGTGTACGCGTGGAAAATAATGGAGGAATATTTCGAAATGACA
AACCTGTTATCGGCATCCCGGCTATGTTTATTACAGATCCAACCTACCAT
GAAAAATTTCCTCGTTTTGTCAATAGAAGTTATATTGCTGCATCGTATGT
CAAATATCTTGAGTCAGGTGGTACTAGAGTTGTCTCCATACCCCCTGGAT
TAAATGTTGAAGAAGAGAAAAAGATATTTGATAACATTAATGGTTTGCTG
TTTCCAGGGGGTGAAGTAAATTTAGTTGATTCTGAGTATTACTACTTGAC
AAAACGACTTTTCAATCTTGCGAAGAAATCAAATGATCAAGGAAAACATT
TTCCCATTTTGGGGATTTGCCGTGGAATGCAAGCTATGGTAGTTCACACT
GTTGGTAATTTAACGCCACTTTCCTTAACTGATGCTCGGAATCTTCCTGC
ATCGCTCGAATTCACCCAAGCCGCCATTCGGAGTGTTTTATTGAATGAAA
TACCTGAGAAATTATTAGAAGAACATAGGACTCGAAATTTAACAGCACAT
TTTCATAAATATGGGATTGAACCAAAGACTTTTCAATcgatgagaaaaat
aaaaaatgattttcaaatcgTAGCAACGAGCTCTGATCGAAAGGGAATCG
AATTTGTTTCTATTTATGAAGGTTAGTAGTTCTTTACTTAATAATGTATG
ATGGAAATTGTTTGTCTGACTGTCCGTCtacacgttttgtataagaactg
ccacaattttgaaactttcggatgttcttaacttttttggtgtCTCAGGC
CTAAAAGTACTTGAGGCGTACAAAgttttgcgagcagaaactttcgcgag
gatgaaaaatcgcgaaattcacgacatttactttcgcgaattaacggaaa
atatttttcgcgaatcaagatgtaaaattgagaattttcacatggcAAAA
TGGCTTaaagggacaaatacttcttggattggcttgaaacatttgtcctt
tgacttatttgTCTTTtaagcaggctaaaaagtgccataaaagttacatt
ttatattttctattttgtcaagaatttttcgcgggCATAAAccttcgcga
atggcccttagtagaatttttaaagacatttactttcgcgaaaaaggctt
aaattcgcgaaaattgcgAAATTTTTGCTTGCGATAAAATTTGTACACCT
AAAGTATTCTCAACATATTCTTATTTCCACCATTTTGTTAGTACTTTTGT
CCATAAGAAATCCCGTGTTTTAGAATCCGCAAGGTCTGGGTATGGTCTTT
ACTCCACAACCTTGCACAAAATTTTGGGCAACCTTGGTCTTACACACATT
TCTTCTTGTCTTTTTTTTAGAGTctaacaaaaaaagttttttataactTT
ACCTGTCATAATTCCCAAGTTCCATttcatttcacttttttttaggCAAG
AAGTATCCTTTTTACGGACTGCAATTTCACCCGGAGAAGATCATGTATGA
GTGGGCTGAAAAATTGAACGTGCCACGTAGCTTAGATGCCATCAAATTCT
CTCAACTTATGGTGGACAATTTTATCGAGGAGGCTAGGAAGAATACTCAC
CAAATAAACTCTAAAATCAAAGAGAAATATCTGATGACTAAACAGCAACC
GATAGACACGGTGTTTATGGAGCATAGTCATTCTCCGTTTCaacaaattt
atgtttactAGTTGGTGATGGTTCTATAAATGTTGATCTTTCTTTTCACT
TTTGTATCTTCTGCTAATAAAAATTGCTCATCGGATTTGGTGAAAGCTAc
gtgttttttcttataaagaacattttttaataccttaagggaagaaagtT
TGGCGGGAAGTTAATTTGGTGGAATTGgcggatttggtcaaaatccgcca
aactaagttcccgccaaatttaattttttccgtcatccgccaaattaaat
tccc

Coding sequence (CDS) from alignment at scaffold_213:746222..751875+

>TCONS_00052263 ID=TCONS_00052263|Name=TCONS_00052263|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_213:746222..751875+ (Clytia hemisphaerica)
ATGAGTTATAATCACAAGACACAAAACACTATGGAATACTGCAATTTATT
AATAATATGGTTTATCCAAGTTTTTACATTCGTTTTTGGTGTACGCGTGG
AAAATAATGGAGGAATATTTCGAAATGACAAACCTGTTATCGGCATCCCG
GCTATGTTTATTACAGATCCAACCTACCATGAAAAATTTCCTCGTTTTGT
CAATAGAAGTTATATTGCTGCATCGTATGTCAAATATCTTGAGTCAGGTG
GTACTAGAGTTGTCTCCATACCCCCTGGATTAAATGTTGAAGAAGAGAAA
AAGATATTTGATAACATTAATGGTTTGCTGTTTCCAGGGGGTGAAGTAAA
TTTAGTTGATTCTGAGTATTACTACTTGACAAAACGACTTTTCAATCTTG
CGAAGAAATCAAATGATCAAGGAAAACATTTTCCCATTTTGGGGATTTGC
CGTGGAATGCAAGCTATGGTAGTTCACACTGTTGGTAATTTAACGCCACT
TTCCTTAACTGATGCTCGGAATCTTCCTGCATCGCTCGAATTCACCCAAG
CCGCCATTCGGAGTGTTTTATTGAATGAAATACCTGAGAAATTATTAGAA
GAACATAGGACTCGAAATTTAACAGCACATTTTCATAAATATGGGATTGA
ACCAAAGACTTTTCAATcgatgagaaaaataaaaaatgattttcaaatcg
TAGCAACGAGCTCTGATCGAAAGGGAATCGAATTTGTTTCTATTTATGAA
GgCAAGAAGTATCCTTTTTACGGACTGCAATTTCACCCGGAGAAGATCAT
GTATGAGTGGGCTGAAAAATTGAACGTGCCACGTAGCTTAGATGCCATCA
AATTCTCTCAACTTATGGTGGACAATTTTATCGAGGAGGCTAGGAAGAAT
ACTCACCAAATAAACTCTAAAATCAAAGAGAAATATCTGATGACTAAACA
GCAACCGATAGACACGGTGTTTATGGAGCATAGTCATTCTCCGTTTCaac
aaatttatgtttactAGATGAGTTATAATCACAAGACACAAAACACTATG
GAATACTGCAATTTATTAATAATATGGTTTATCCAAGTTTTTACATTCGT
TTTTGGTGTACGCGTGGAAAATAATGGAGGAATATTTCGAAATGACAAAC
CTGTTATCGGCATCCCGGCTATGTTTATTACAGATCCAACCTACCATGAA
AAATTTCCTCGTTTTGTCAATAGAAGTTATATTGCTGCATCGTATGTCAA
ATATCTTGAGTCAGGTGGTACTAGAGTTGTCTCCATACCCCCTGGATTAA
ATGTTGAAGAAGAGAAAAAGATATTTGATAACATTAATGGTTTGCTGTTT
CCAGGGGGTGAAGTAAATTTAGTTGATTCTGAGTATTACTACTTGACAAA
ACGACTTTTCAATCTTGCGAAGAAATCAAATGATCAAGGAAAACATTTTC
CCATTTTGGGGATTTGCCGTGGAATGCAAGCTATGGTAGTTCACACTGTT
GGTAATTTAACGCCACTTTCCTTAACTGATGCTCGGAATCTTCCTGCATC
GCTCGAATTCACCCAAGCCGCCATTCGGAGTGTTTTATTGAATGAAATAC
CTGAGAAATTATTAGAAGAACATAGGACTCGAAATTTAACAGCACATTTT
CATAAATATGGGATTGAACCAAAGACTTTTCAATcgatgagaaaaataaa
aaatgattttcaaatcgTAGCAACGAGCTCTGATCGAAAGGGAATCGAAT
TTGTTTCTATTTATGAAGgCAAGAAGTATCCTTTTTACGGACTGCAATTT
CACCCGGAGAAGATCATGTATGAGTGGGCTGAAAAATTGAACGTGCCACG
TAGCTTAGATGCCATCAAATTCTCTCAACTTATGGTGGACAATTTTATCG
AGGAGGCTAGGAAGAATACTCACCAAATAAACTCTAAAATCAAAGAGAAA
TATCTGATGACTAAACAGCAACCGATAGACACGGTGTTTATGGAGCATAG
TCATTCTCCGTTTCaacaaatttatgtttactAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033073XLOC_033073Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052263-proteinTCONS_00052263-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052263-exon-scaffold_213-1491911889:746222..746350TCONS_00052263-exon-scaffold_213-1491911889:746222..746350Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1510915933:746222..746350TCONS_00052263-exon-scaffold_213-1510915933:746222..746350Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1575043694:746222..746350TCONS_00052263-exon-scaffold_213-1575043694:746222..746350Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1491911889:746700..746740TCONS_00052263-exon-scaffold_213-1491911889:746700..746740Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1510915933:746700..746740TCONS_00052263-exon-scaffold_213-1510915933:746700..746740Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1575043694:746700..746740TCONS_00052263-exon-scaffold_213-1575043694:746700..746740Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1491911889:747607..747691TCONS_00052263-exon-scaffold_213-1491911889:747607..747691Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1510915933:747607..747691TCONS_00052263-exon-scaffold_213-1510915933:747607..747691Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1575043694:747607..747691TCONS_00052263-exon-scaffold_213-1575043694:747607..747691Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1491911889:747919..748030TCONS_00052263-exon-scaffold_213-1491911889:747919..748030Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1510915933:747919..748030TCONS_00052263-exon-scaffold_213-1510915933:747919..748030Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1575043694:747919..748030TCONS_00052263-exon-scaffold_213-1575043694:747919..748030Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1491911889:748538..748656TCONS_00052263-exon-scaffold_213-1491911889:748538..748656Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1510915933:748538..748656TCONS_00052263-exon-scaffold_213-1510915933:748538..748656Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1575043694:748538..748656TCONS_00052263-exon-scaffold_213-1575043694:748538..748656Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1491911889:749800..750592TCONS_00052263-exon-scaffold_213-1491911889:749800..750592Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1510915933:749800..750592TCONS_00052263-exon-scaffold_213-1510915933:749800..750592Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1575043694:749800..750592TCONS_00052263-exon-scaffold_213-1575043694:749800..750592Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1491911889:751367..751875TCONS_00052263-exon-scaffold_213-1491911889:751367..751875Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1510915933:751367..751875TCONS_00052263-exon-scaffold_213-1510915933:751367..751875Clytia hemisphaericaexon
TCONS_00052263-exon-scaffold_213-1575043694:751367..751875TCONS_00052263-exon-scaffold_213-1575043694:751367..751875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:746222..751875 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.86213	6.31329	4.13097	3.59019	1.22004	1.09541	1.42621	1.55025	4.74869	4.12434	3.58732	3.53381	6.24149	5.4424	4.63106	7.19218	13.0512	10.5556	1.57838	2.87019	6.2884	5.37975	5.56207	7.1257	2.64649	3.21069	5.02796	3.85979	3.74499	2.99391
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029062Class_I_gatase-like
IPR011697Peptidase_C26
IPR015527Pept_C26_g-glut_hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003824catalytic activity
GO:0008242omega peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006541glutamine metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006541 glutamine metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008242 omega peptidase activity
Blast
[Close]
BLAST of TCONS_00052263 vs. Swiss-Prot (Human)
Match: GGH (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 5.944e-53
Identity = 112/292 (38.36%), Postives = 162/292 (55.48%), Query Frame = 1 
Query:  658 KPVIGIPAMFITDPTYHEKFPRFVNRSYIAASYVKYLESGGTRVVSIPPGLNVEEEKKIFDNINGLLFPGGEVNLVDSEYYYLTKRLFNLAKKSNDQGKHFPILGICRGMQAMVVHTVGNLTPLSLTDARNLPASLEFTQAAIRSVLLNEIPEKLLEEHRTRNLTAHFHKYGIEPKTFQSMRKIKNDFQIVATSSDRKGIEFVSIYEGKKYPFYGLQFHPEKIMYEWAEKLNVPRSLDAIKFSQLMVDNFIEEARKNTHQINSKI-KEKYLMTKQQPIDTVFMEHSHSPFQQ 1530
            KP+IGI            K  +   R YIAASYVKYLES G RVV +   L  ++ + +F +ING+LFPGG V+L  S+Y  + K  +NL+ +S D G +FP+ G C G + + +   G    L+ TD  ++   L FT   + S +    P +LL       LTA+FHK+ +  K F    K+K  F ++ T++D K IEF+S  EG KYP YG+Q+HPEK  YEW     +  + +A+K +  + + F+ EARKN H   S+  +EK L+ +  PI T     + S FQQ
Sbjct:   33 KPIIGILMQ-----KCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECL-LTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYT----GNISSFQQ 313
The following BLAST results are available for this feature:
BLAST of TCONS_00052263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GGH5.944e-5338.36Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
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