TCONS_00052258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052258
Unique NameTCONS_00052258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2006

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052258 ID=TCONS_00052258|Name=TCONS_00052258|organism=Clytia hemisphaerica|type=transcript|length=2006bp
GAGACACAAGATGATTGAAAACAAGAAAGTTCCAAAATAATGAAGAGAAG
AAGAGAAGATTTGATGGGAGTTGATGATTGTTGACGGTTGAATCAAATAA
ACACAAATCACAAATCACTATGTTCCAACATTGCAACCACGTAAAAAtcc
ttattttcatcatttttattacttctaCATTTGGTGAGCAGTGGCAAGAA
CCTACTACAAAAGCACCAGTTCCCAAGGCGCAAGAACATGTCGGCCATCC
TGGACACGAAATCCCACGTGACCCTACTACAAAAGCACCGATCATTTCAA
CGACACCAAAAGTTGATGATCCAGTTATCACAAATCTAGCAGTTATGGAA
GCTAAAACCACAACAGCACAAGTAACAACCCAAAGCCGTGCACTAAAAGA
GAGCACGAAGACACAAGGGCCATCAGTTTCTACAAGTATTAAAATCAACC
CAGACCCAACAGGAACAAAACTACTCCCAGAGGACTTAAATCATGGCGGT
AGGAGACACATTCATACAGAGTACGGGACTGTATACGCTACTGCTGGACC
CATACCAACCAAAACCCTTCCCACGACAAAAGAACAAGCGTCCCCTACAA
CAGTCTCACCAAAGGTGTCAACTGCAGATTTCTTTCAGACTTTACCGACT
TCAACAACAACTGTTAAAACAAAACGCCCCATCAAATTTGCAAAGCAAGA
ACATGTTCGGATGAGCAAGGCAGATGTGAAGCAGTTTATGAGACGAAGTA
ATCGAGAGAAGGAACAAGAATTAATTCTATGTGGTATTAACGATCGAAAG
TATCTTGAAGCAATCAAAGAACACATAGGGAAAGAGGAAGTTGTCAAATA
CAACAGTCTTTGTGGGGCTAATATCACAGTAGCATTTTCCGAACTCCCTC
CTCTTGTTTACACCAATGAAACTGATCGAACAGTCCATGGTATTTTACCA
GAACTGTTAAAAGAGGGTCTGATTGATCGCTGTTGCCTGGGTTACAACAA
TCTACACTTCATCAGAAAGACATATAGTGATAAATTTGTGGATCAATTTC
GCCCATTGAATGAATCACAAATTGTCCTCCCTGTGGAAAATAACAAAGAC
GAAGGGCTTATTCTGGGCTTCAAATACAGCCCTCTGATTCATTTCAAGTC
AATcaaattcttttcaaagaaacaaGAGAAAGGCCACGTGGAGATTTTGA
GGAATTTGGCGCAAAGCACCCTGGAAACATGGCCGTTGTTTGTGGTTGCT
ATGGCATTGACATTGTTAGCTGGTACCATTATTTGGATTATGGAAAATAT
GACAAACAGTAAAGAATTTCCAAAGCGATTTCCACATGGTATTTTCGACG
GTTTTTGGTGGGCTTTCATCTCAATGACAACTGTTGGCTATGGAGACAAA
TCACCGTTGACGTTCTTAGGCCGAACATTTGCTGTGTTTTGGATAGTGAT
CGGTATCACCATCACCAGCCTCTATGTGGCCACATTGACGTCAGTACTAA
CCATGGAATTATCCGGAGAACGACCTCTCATCATTAGTGGCAAAAATGTT
GGAGTTTTGTCAAATCCCGTACACACCATGAGAGCAGTCAAATTGCATCG
TGGAATACCTATTCGATACGCCTCGTTTGAAGATATGATGAGAGCcctga
aaaaaggaaatattGAAGCTTTTGCGATTGATGATATGACGTATAAAATC
AAAGCAGATGATATCAGTCGGTTAGGAAATGACGTCAAAGTTGGTATCGA
GCATAAATTTGATTCCCAATCGATTGGGTTTACAGCCATCAATGAAACTT
NctttattttttatgaaaatatgagcaattttgtaaaattttgaatggcA
GACGACCTACCAACAGAAAATTGGATTTAGACAGGTGAGCGCGTCCTCAA
ACCTGCAtgatgttatacatttttggaactGGAAGAGATCAGcgctgttt
gttttttttgtctcattgacccaatcaaatcctacaaaaaattattcagt
tttttc
Run BLAST on NCBI

transcript from alignment at scaffold_213:692386..698637+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052258 ID=TCONS_00052258|Name=TCONS_00052258|organism=Clytia hemisphaerica|type=transcript|length=6252bp|location=Sequence derived from alignment at scaffold_213:692386..698637+ (Clytia hemisphaerica)
GAGACACAAGATGATTGAAAACAAGAAAGTTCCAAAATAATGAAGAGAAG
AAGAGAAGATTTGATGGGAGTTGATGATTGTTGACGGTTGAATCAAATAA
ACACAAATCACAAATCACTATGTTCCAACATTGCAACCACGTAAAAAtcc
ttattttcatcatttttattacttctaCATTTGGTGAGCAGTGGCAAGAA
CCTACTACAAAAGCACCAGTTCCCAAGGCGCAAGAACATGTCGGCCATCC
TGGACACGAAATCCCACGTGACCCTACTACAAAAGCACCGATCATTTCAA
CGACACCAAAAGTTGATGATCCAGTTATCACAAATCTAGCAGTTATGGAA
GCTAAAACCACAACAGCACAAGTAACAACCCAAAGCCGTGCACTAAAAGA
GAGCACGAAGACACAAGGGCCATCAGTTTCTACAAGTATTAAAATCAACC
CAGACCCAACAGGAACAAAACTACTCCCAGAGGACTTAAATCATGGCGGT
AGGAGACACATTCATACAGAGTACGGGACTGTATACGCTACTGCTGGACC
CATACCAACCAAAACCCTTCCCACGACAAAAGAACAAGCGTCCCCTACAA
CAGTCTCACCAAAGGTGTCAACTGCAGATTTCTTTCAGACTTTACCGACT
TCAACAACAACTGTTAAAACAAAACGCCCCATCAAATTTGCAAAGCAAGA
ACATGTTCGGATGAGCAAGGCAGATGTGAAGCAGTTTATGAGACGAAGTA
ATCGAGAGAAGGAACAAGAATTAATTCTATGTGGTATTAACGATCGAAAG
TATCTTGAAGCAATCAAAGAACACATAGGGAAAGAGGAAGTTGTCAAATA
CAACAGTCTTTGTGGGGCTAATATCACAGTAGCATTTTCCGAACTCCCTC
CTCTTGTTTACACCAATGAAACTGATCGAACAGTCCATGGTATTTTACCA
GGTGAGTGTATTTTCTCGTACATAAAATCCTTGATTTTCCCGACCTCGCT
TAGCAGGGGGACTTGGCAGGGCGTTAGAACATACTTGAATAGGGTTATTT
TTTGTGTTGAAATGTTAATGATAATGACCGAAAATCGATCATTTAAACTA
TAATACAGGTTTCCAAATAGATCATTCGTATAAAAAGACACGAAAATCTA
AAGAATTAAGATCAACTGTGATTGACTAAAACTTGCATACAAAGTAGACT
AACAGAGCTGGATGGCTGGATGTCGATTTTTAACTTCTCTTCTCCAGAAA
CTAACTCACTTAAAGTTCTTTACACCTTTTTAGAACTGTTAAAAGAGGGT
CTGATTGATCGCTGTTGCCTGGGTTACAACAATCTACACTTCATCAGAAA
GACATATAGTGATAAATTTGTGGATCAATTTCGCCCATTGAATGAATCAC
AAATTGTCCTCCCTGTGGAAAATAACAAAGACGAAGGGCTTATTCTGGGC
TTCAAATACAGCCCTCTGATTCATTTCAAGTCAATcaaattcttttcaaa
gaaacaaGAGAAAGGCCACGTGGAGATTTTGAGGAATTTGGCGCAAAGCA
CCCTGGAAACATGGCCGTTGTTTGTGGTTGCTATGGCATTGACATTGTTA
GCTGGTACCATTATTTGGATTATGGTGAGTCGGAGGATGGGGATGAAAAA
GTTAGgataaaatagttttaactttttatcaTGATAGGTCTATGCAGATT
CAGCTGATTATTTCCAGTACTGAAGGAATGGGCACATTCTGAAGCTCTAC
CTTTTCAATTTGTTAgctaaaaatgaagaatatgaAACTGTAtcttaatt
caaaaatttacGCGTAATAAACATTGGAACCATCGTATTGTAACCTCCAC
CTTCTCCTTATTCGCAGGAAAATATGACAAACAGTAAAGAATTTCCAAAG
CGATTTCCACATGGTATTTTCGACGGTTTTTGGTGGGCTTTCATCTCAAT
GACAACTGTTGGGTAAGTGCGCTTTATTGAAACTTGTTCCCAAGAGAGCT
TTTTATCAAGAGTTACCCTCTAAAGTAGATTTTTAGGGGAAATAGTGATT
CTTCGTGATGAGACATAActggcttttccagaaaaagaagtttGCAGCCT
TAAATATTCTTCTTTAATGCGCATGGTTGACAGAGAACCATTTTATTGTC
TGTGATAGGCCTACACCCTTCTGGGAAACACAACTggatttcaaattatt
gtaCCTTCCTCTTTTTAAATATAGCATGACGAACTCTTGTAAAGTATGGC
GGATTTACAATTGAAATAGACCTATTGCGTTAATTCCCAAATATAACATA
AAAATTAACCACATTTCGATCGCACATCAAAGATTGGTCAGAGTATTAAG
TTATCGCGATTCCGATCACAAGTACCATACTAATAAAGAAATCAACTCTT
TATTATCTTATTTCAGCTATGGAGACAAATCACCGTTGACGTTCTTAGGC
CGAACATTTGCTGTGTTTTGGATAGTGATCGGTATCACCATCACCAGCCT
CTATGTGGCCACATTGACGTCAGTACTAACCATGGAATTATCCGGAGAAC
GACCTCTCATCATTAGTGGCAAAAATGTACGTTACATCGTTATGCAAATG
TGTTGTTTTATGACCCTTTTTGTaccagaatttttttcatgaggCTTGAC
TGCTCTTATCTTTTTTGAGCTTTCagcttaaaattgttcttactcTAAGG
ACCCGAATAGTAGGGTGGATCCTAATAAGAATGGGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaggggggggggg
ggcaaaaattttcgaaaataaataacCGAGTGGGAACATTTATTTGGAAC
CTTGGAGTATACTGCTCtgaattttaggcaaaattgaagtttttttaggg
cttacaatttttgtttataacttTGACCCTCGATTTTCTTAATATTTAGT
GATCGCTGATCAACATTGATATAACAAATGTAAATTTCGTATTTCTAGCG
TTTTTGAGCTTTATCAACATTCttaagctaaggctacactgatagttttt
tcaggcggctgcaatgcaattgttgcattgcagccgcctgaaaaTTGTTG
CTGTCTAGCCATCTAAAAAAAGGAACcaggaaaaacgtcaaaaaaacatt
cgaattacaaaacattcgaattataaaacattcgattttatcaaaaacat
tcgattttatcaaaaacattcgattttatcaaaaacattcgattttatca
aaaacattcgattttcgaaGGTCCAACGTTCGAATGACGTAATAAGATTG
GAATGTCAGATACAACGTCAAAAAAATTGCAGACACTTGCAATTTGttct
gcaatatttttattgcgtTGCAGAGCAATtgcagaaaaaattgacgtgct
acattttacaatttcttgCGCGCTTGCAACGCAACGCtaattgcattgca
gccgcttgaaaaaactatcagtgtagccttagctttaTATAAACTGTTGT
TTAAAAAATCCGGATTGTAAAAAACACGATAAGGAAAATCTTCATACCTT
TTTTTACCACAATGATAGGTTGGAGTTTTGTCAAATCCCGTACACACCAT
GAGAGCAGTCAAATTGCATCGTGGAATACCTATTCGTAAGTAAATAAGAT
TTCTAAAGTACATTTgttttaagtgtgcactcttctTTGCTACTATGTGG
AAAACGCtatttgttttataagaatactcTTTAttagaatgtccatgatg
aaaatggcctaaaaattaagaataatgctaagaatatcaccatcatgaaa
tttttcTACTCGGgttaagaatgtcatttttagagcattaattacaatta
cccccaagtaaggcttatcctttcacaaaaatgccattttatgcttgaga
cgtatgtactaaatgttaaatctagtctgaattaggatcctaacctaaga
atgctgtaagaatattttaggacgattttcccaaaaaaattaagaatatc
catgatgaaatggaattacactattcttataaaaaaacgtgtactaatTC
CATATGGTAGCAGAAGAGAAGGGAAAGGACTCTTTAATCGTCTAAAGATA
GATAGATTCTTTTACTAATACAACCAAGTTAAACAGTATCGAAAAAGAAT
AGTTTTCAAGATTCATTGATGAACTGgtaattgggcttttccagaaataa
tttgaatatgggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcccc
cccccccccccggacagggcaaattttgatgatttttcgctactccccgg
acaatatatcctctaCCCCCATGTActgacattttctggaagagcccatt
gatGAATTCGAATCATCAAGGGTAGAAAAGATTTCTCTATTCCACaagaa
aataggattttttcCTCTATCTACCAGAAGAGATAAAATTCTGAATATTG
ATCATGCCAATGcaagtttttaattttggttatcaaataatacacgtttt
ttttataagaacaaactatataagaacatataaagGCTTCGagggccaaa
atgttaagaacaagttaagaacattttaaggctttgtagacactaaaaca
cctattttcttaggaaaatgacaaatatactcacaaaatagtgaaaataa
aaacaggcTTGGGACAtgttaagcttaaaactcaaaaagttaagaacatc
taaaagcttcaaaattttggatgttcttataacaaaatgTGTATGCATAG
TAAAGTACCTCCGAGAAGACATCTGTCATCCTTGTTGATTAACGATCTAT
TCTTTCATCTCTTTTGATTTAAGGATACGCCTCGTTTGAAGATATGATGA
GAGCcctgaaaaaaggaaatattGAAGGTAAATAATTATTCTACTCAAAA
AGCCCTAACCaaagaaaatacttaaatactctgttttataagaacaatga
ggctcaaagtaAGGTAACAATTTTatgaacaatgctgagcctaaaATTCC
TCAATTTTTAGCAATTAAGAGGTCGAAGTAGTAAAAATTAGGTATAAAAC
CTAAAATACCTCTATTTCACCTTGTAATAAGAACATAATAAGAagaattt
gaggctcaaagtgcaaaaaaataagaacagtagAGTCTGATAAAAAATCT
ATTGGTTTTTATGAAACAAAGAGAGTATACTACCTTCAAAGTGAGGTAAT
TAGAAAGAGCTCCAATTACAGAACCGTATTTCCTCAGATAAGTTCCACAG
CGATCTTTAAGTTTTCAACATTCAGCACTCGTTGAAGAtaggttgattga
ttgatcaacatctattttcaaaatgatactTATCTTAAAATTGGACTTTA
CATCTTCATTGCAGGGATAAGTAAGTGTGTCCTTATAGTCTATTTTGaga
gaactaattttagcgggaactaattttcgcggtttttgacAAAAGCGCGA
AAATTAGATCCTCGAATCATAAAATTTGgctatttttcatttaaaaaatt
gaaagatccctaggaaaaggaaagaaatgtgtccaaaataaggcaaaacc
TCGAAAATTAATTCCGGAGAAAtgcgattttttggaattttttttcgatc
gcGAAAACtagttcccgctaaaattagttTCCTTAAGGTATAACTTACGA
TTAATGTATTTCAGCTTTTGCGATTGATGATATGACGTATAAAATCAAAG
CAGATGATATCAGTCGGTTAGGAAATGACGTCAAAGTTGGTATCGAGCAT
AAATTTGATTCCCAATCGATTGGGTTTACAGCCATCAATGAAACTTNctt
tattttttatgaaaatatgagcaattttgtaaaattttgaatggcAGACG
ACCTACCAACAGAAAATTGGATTTAGACAGGTGAGCGCGTCCTCAAACCT
GCAtgatgttatacatttttggaactGGAAGAGATCAGcgctgtttgttt
tttttgtctcattgacccaatcaaatcctacaaaaaattattcagttttt
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033071XLOC_033071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052258-exon-scaffold_213-1491911889:692386..693336TCONS_00052258-exon-scaffold_213-1491911889:692386..693336Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1510915933:692386..693336TCONS_00052258-exon-scaffold_213-1510915933:692386..693336Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1575043694:692386..693336TCONS_00052258-exon-scaffold_213-1575043694:692386..693336Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1491911889:693669..694009TCONS_00052258-exon-scaffold_213-1491911889:693669..694009Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1510915933:693669..694009TCONS_00052258-exon-scaffold_213-1510915933:693669..694009Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1575043694:693669..694009TCONS_00052258-exon-scaffold_213-1575043694:693669..694009Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1491911889:694253..694347TCONS_00052258-exon-scaffold_213-1491911889:694253..694347Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1510915933:694253..694347TCONS_00052258-exon-scaffold_213-1510915933:694253..694347Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1575043694:694253..694347TCONS_00052258-exon-scaffold_213-1575043694:694253..694347Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1491911889:694802..694961TCONS_00052258-exon-scaffold_213-1491911889:694802..694961Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1510915933:694802..694961TCONS_00052258-exon-scaffold_213-1510915933:694802..694961Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1575043694:694802..694961TCONS_00052258-exon-scaffold_213-1575043694:694802..694961Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1491911889:696004..696070TCONS_00052258-exon-scaffold_213-1491911889:696004..696070Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1510915933:696004..696070TCONS_00052258-exon-scaffold_213-1510915933:696004..696070Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1575043694:696004..696070TCONS_00052258-exon-scaffold_213-1575043694:696004..696070Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1491911889:697459..697512TCONS_00052258-exon-scaffold_213-1491911889:697459..697512Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1510915933:697459..697512TCONS_00052258-exon-scaffold_213-1510915933:697459..697512Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1575043694:697459..697512TCONS_00052258-exon-scaffold_213-1575043694:697459..697512Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1491911889:698300..698637TCONS_00052258-exon-scaffold_213-1491911889:698300..698637Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1510915933:698300..698637TCONS_00052258-exon-scaffold_213-1510915933:698300..698637Clytia hemisphaericaexon
TCONS_00052258-exon-scaffold_213-1575043694:698300..698637TCONS_00052258-exon-scaffold_213-1575043694:698300..698637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:692386..698637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264294	0.295768	0.296393	0.516744	0	0	0.0775921	0.0485854	0.0852844	0.190454	0.184678	0.199409	3.32203	2.96343	2.61329	1.33323	0.666203	0.591391	3.3093	3.84753	0.212904	0.253709	0.0701795	0.215796	0.12922	0	1.1714	1.21404	0.31619	0.0917402
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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