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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052252 ID=TCONS_00052252|Name=TCONS_00052252|organism=Clytia hemisphaerica|type=transcript|length=2090bp
TTATCACAGAAACAACTCCCCCAAACGAATAGATATATTGAAAGATCTGA
AATCTGAGAACACTAGACGACCAAGGAATCAAACAAGACGACACAACAAG
CTGACACATCCTCAAATTAAAGATGGCAATGAACGGCACCTCGTCAACAG
AAACGGAGCAAATCATTATTGGAATCTCATCCTCTATCTCCATCGTCTGT
TCATTTCTCATTCTGACCACATTCGCATGTCTACGGGAAGTACAAACACT
GACACGTCAAATCATCATTTGCATGACCATAGCTGACTTACTGACAGCTC
TGGCAAACCTGATTGGTGCAATGGTCATCCATGGTCAGTTCCACACTGTC
TCAAGTAAAACCGTGATTGAAGACGATGGGTTTCTTTCCTGGTGCACTAT
CCAGAGCTTTGTATCTTCTACGTCTTCACTCTGGTCCTTTTTATGGACAA
TGGTGTTATCTATAGCACTACATTACGTCATAGTGAAAGAGAAAGTGGAT
CGAATAATAAAAGTCTTACCGTGGTTGCACGTGCTTTGTTGGTTGTTGCC
ATTGGTGGTCAATGTGGTGGCACTATGGAAAGGCAAACTTGGTTATTCAA
AAGATGCAGTTACTGGTGGATGGTGCTGGATATGTAGCGACGGACGTACA
CAATGAAGCCGTTATTTGGATGACATTAGACGGAAAATTTATCGAAATTT
TGACTTATTTTGTCATCTTCTACTATTTCGTACTTATCAAAAAACATCTC
AAGAAAAAGCTTCGTAAGATTTCGCGATCTTCAGCTTCATCGCTCACAAA
GAACAGTAACAGCATTGTTGATGCAATTAGATTATTGGAGAAGAAACTCA
TCTTTCTACCCATATTGTTGATTCTGTTGAGAATCTGGGGCACAATTAGA
TATTTATTCGTTGTATTCAAACTGAACACAGCTAACCATAAAGGAGTCGA
AACAGCTGACAGAGTACTCAGCTATCTGCAGGGCGTTGGAGATTCATCAC
AGGCAACTCTCAACTTCATCATATTCTGCGCATGCACACCCAAAATTcgt
aagcagatattcaattgGATTCATTCAGGAAAATGTCATCAAAACTCAGC
AGCAAAGACAGACAGTGAAGAAGGGGAGAGGAAAACACTCATCACTAAAC
CATGAGAAAATCATGTCCAGCTGACACACAGCATTGTTTTATcgttcatc
taacattatatggacgttgtctatattagataaacgttgaaacaacattt
tctTGTGCCAACTGGAATGCGAGACTTGAAAACATTCATCACCAAACCAT
ATGAGAAAAACATGGGAAACTTGAAAATCAGGAGGTCTCGTAGACATGGT
TTTGGGCCTGTTAAACCGAAACGCCTATGTCTCGTGATTTGGGACAGAAG
AAGGCTTTAATAAGTATTTAACGATCTAAATCTATCATTGAACCGATGGG
ATGAGATATTATTTGTTTCAAACGCAATTCTTCTGCCGACATTTTACACC
CTACTACTATTAGATTAGGGGCCCGAATACCTTGAGTATCACAGCCTATA
CACTGTAACGACAAATCCCGATTCTATTCCTGCGCACTCAGCGAAAATAA
AAGTAACGATTGCAATCATCAAGGATCCTAAATAATCATCCAGCATCTTG
GATAAAGCCGTAGAAAAGAAACGTAGAAAACATTCAATGGCAGAGAACCA
ACTCAAAGCATAAGTTACAAAATATTATACTCCAGTTTTTGTCCCCaccg
aaaataatcaaataaaccaatcctcactgcaaaatattatgctatttttc
ctattcccattgaattttctgacttgttgaaaacaaaataatttaaatcc
ccggtcataaaaaatataggaataccaatccccatcgagtttcagtcctt
TTTTTACCCCCAATCACTGAAAAATTCAACCgggctgtgagaagggggtg
tagaaAGCTAAATTGTGGTGCCCACGGTACGACAACGAGACGGTGATACA
CGAATGTAGTTTAAACATGCATTAACataattgatttcaaagcctcGAAG
GAGCTAGAtccgagactcctggatgggaaatgaaaccact Run BLAST on NCBI transcript from alignment at scaffold_213:664640..668632+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052252 ID=TCONS_00052252|Name=TCONS_00052252|organism=Clytia hemisphaerica|type=transcript|length=3993bp|location=Sequence derived from alignment at scaffold_213:664640..668632+ (Clytia hemisphaerica)
TTATCACAGAAACAACTCCCCCAAACGAATAGATATATTGAAAGATCTGA
AATCTGAGAACACTAGACGACCAAGGAATCAAACAAGACGACACAACAAG
CTGACACATCCTCAAATTAAAGATGGCAATGAACGGCACCTCGTCAACAG
AAACGGAGCAAATCATTATTGGAATCTCATCCTCTATCTCCATCGTCTGT
TCATTTCTCATTCTGACCACATTCGCATGTCTACGGGAAGTACAAACACT
GACACGTCAAATCATCATTTGCATGACCATAGCTGACTTACTGACAGCTC
TGGCAAACCTGATTGGTGCAATGGTCATCCATGGTCAGTTCCACACTGTC
TCAAGTAAAACCGTGATTGAAGACGATGGGTTTCTTTCCTGGTGCACTAT
CCAGAGCTTTGTATCTTCTACGTCTTCACTCTGGTCCTTTTTATGGACAA
TGGTGTTATCTATAGCACTACATTACGTCATAGTGAAAGAGAAAGTGGAT
CGAATAATAAAAGTCTTACCGTGGTTGCACGTGCTTTGTTGGTTGTTGCC
ATTGGTGGTCAATGTGGTGGCACTATGGAAAGGCAAACTTGGTTATTCAA
AAGATGCAGTTACTGGTGGATGGTGCTGGATATGTAGGTTTGATTTCCCT
TTTTCATTCGTTACCTTAAACCTGGGAATAAACAAAAATGAGTGGAATTT
GATTGAACCTGAGAAGAAGTAtaaatccgggggggggggactcgCTTTAA
AAACGAACATACGCGCGGCCGAAAATAAGGCCTTTGAAAACGGACCCTTA
gaatgcaatttttctcatctttgctgagaaaccttacagtgcactttgag
AAGAGCTTGGAAAATATGCCCTTAAGGGCCACAtgtatggtaggtcattt
aaCTTGCGGTATAAATTGACCTTATGAAAAGGAAGTATTCTGGTTAAATA
TGACACACTTTGCCTAtactttatttacattttttcaagGGTAGATCCAT
TTAGAGGTTATTCTGCAAGAATTAAGGCGTAAAACCATAAACCATCAAAA
CAAGGGGAAGataatttcatgaatttttatCGTTTTGGAATCTATTTTTT
CGAACGACAAATTCAACTATCCTTTTTATTTGGACATCTTTGATTCATTG
ACATCATTGTGTTAATGGATTAATTTCTATCCACACATTAACTCATTAAG
CTTGAGGAGACTGGGTTGAAGTCTACCAGGAAAGAATCGCGTCAAAATGt
gtcaaaactcaaaatatctGAAGTTTTGTGACCTATATatattatgataa
ttattttaactaaacaCAAAAGAAGATAGATATATACAATTAAATTTTCC
TGGGTCGTTACCCAAACTGTTTTGTTCTATTAATAATtttatcttactat
actaattGAGTTATTAGTAGCTTACTATTATTATTTAAATTTCATCTTGA
GGGAGTCGCACTCTACCTCTTGATCCACGAATGCATCTCACCGTCGATCT
TAAAAGTGAGAAATATCTGAAGTTTTTGCGTGTTGCTGATTCTCTCATAG
CGAAaagttttgacgtcaatttttcttGGGAAAACTCGAACCCGGACTCT
TCACGTCTCAAGGGCTGATTGACGTATTCTTTCTCTCCTTCAGCGACGGA
CGTACACAATGAAGCCGTTATTTGGATGACATTAGACGGAAAATTTATCG
AAATTTTGACTTATTTTGTCATCTTCTACTATTTCGTACTTATCAAAAAA
CATCTCAAGAAAAAGGTAAAAGAAGTATTGTCAATTTAAaactttaagaa
atatttttgttaaatccCTGGAAACGTTATACAGTTTCCATCGAGAAAAG
TAACATAATCAAGCCCGGGTTACGCTTAAACGCTTGTTAGAATGTTTTTA
GAAATTGACCTTTCCCTTAGAATCAGGCCAAAAATATTAGTTTCAATATT
CTTTTTCGACGCATTTATTTAGTGTatacttttcatcatttctaGCTTCG
TAAGATTTCGCGATCTTCAGCTTCATCGCTCACAAAGAACAGTAACAGCA
TTGTTGATGCAATTAGATTATTGGAGAAGAAACTCATCTTTCTACCCATA
TTGTTGATTCTGTTGAGAATCTGGGGCACAATTAGATATTTATTCGTTGT
ATTCAAACTGAACACAGCTAACCATAAAGGAGTCGAAACAGCTGACAGAG
TACTCAGCTATCTGCAGGTATCATGTTTTGAGAATTCctcactttttttc
tatgttaaAGAGTTCTCTATAGACGCCCTAATCTCCAAGCAGGTTCTGAT
ACTCAGTGCATGGCCGTCTTCACTCTAAAGGCCATTACTCCGTCATATTC
ACCATATCTCTCTAGAGCAGAGCGTGTTATAGGCAGAATTGAATACAAAT
TTGTTCGCactaaggaaatttcgagatatggagtaaggtttataaagcat
tgttaactgaatggACCATAAAacctgttcgagttaaggaatttctagtt
atggagtaaggtttataaggcattgttaactgaagggaccataaaacctg
ttcgagttaaggaattTCTAGTAATGGAGTAAGGTTGATAAGGAATTGta
aactgaagggaccataaaacctgttcgagttaaggagacattcgagtaat
agatgttcgatttatggagactccactgtatcatACACACGACCTTACTT
CTTATGATACTGGATTGTATATGTTGTATGTATACCCAAGTCGGGTATGT
CAAACATAACATTAATACTGATCATAAAgtgattctttaaaaaaatcacg
tCGAAATTAAGACCAAGTTTAACTTGATTCTTAAAATCAAATCAGAGAAA
CACAAATATTTACATATCTCTTCATTGAATTCAGGGCGTTGGAGATTCAT
CACAGGCAACTCTCAACTTCATCATATTCTGCGCATGCACACCCAAAATT
cgtaagcagatattcaattgGATTCATTCAGGAAAATGTCATCAAAACTC
AGCAGCAAAGACAGACAGTGAAGAAGGGGAGAGGAAAACACTCATCACTA
AACCATGAGAAAATCATGTCCAGCTGACACACAGCATTGTTTTATcgttc
atctaacattatatggacgttgtctatattagataaacgttgaaacaaca
ttttctTGTGCCAACTGGAATGCGAGACTTGAAAACATTCATCACCAAAC
CATATGAGAAAAACATGGGAAACTTGAAAATCAGGAGGTCTCGTAGACAT
GGTTTTGGGCCTGTTAAACCGAAACGCCTATGTCTCGTGATTTGGGACAG
AAGAAGGCTTTAATAAGTATTTAACGATCTAAATCTATCATTGAACCGAT
GGGATGAGATATTATTTGTTTCAAACGCAATTCTTCTGCCGACATTTTAC
ACCCTACTACTATTAGATTAGGGGCCCGAATACCTTGAGTATCACAGCCT
ATACACTGTAACGACAAATCCCGATTCTATTCCTGCGCACTCAGCGAAAA
TAAAAGTAACGATTGCAATCATCAAGGATCCTAAATAATCATCCAGCATC
TTGGATAAAGCCGTAGAAAAGAAACGTAGAAAACATTCAATGGCAGAGAA
CCAACTCAAAGCATAAGTTACAAAATATTATACTCCAGTTTTTGTCCCCa
ccgaaaataatcaaataaaccaatcctcactgcaaaatattatgctattt
ttcctattcccattgaattttctgacttgttgaaaacaaaataatttaaa
tccccggtcataaaaaatataggaataccaatccccatcgagtttcagtc
cttTTTTTACCCCCAATCACTGAAAAATTCAACCgggctgtgagaagggg
gtgtagaaAGCTAAATTGTGGTGCCCACGGTACGACAACGAGACGGTGAT
ACACGAATGTAGTTTAAACATGCATTAACataattgatttcaaagcctcG
AAGGAGCTAGAtccgagactcctggatgggaaatgaaaccact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052252-exon-scaffold_213-1491911889:664640..665276 | TCONS_00052252-exon-scaffold_213-1491911889:664640..665276 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1510915933:664640..665276 | TCONS_00052252-exon-scaffold_213-1510915933:664640..665276 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1575043694:664640..665276 | TCONS_00052252-exon-scaffold_213-1575043694:664640..665276 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1491911889:666283..666404 | TCONS_00052252-exon-scaffold_213-1491911889:666283..666404 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1510915933:666283..666404 | TCONS_00052252-exon-scaffold_213-1510915933:666283..666404 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1575043694:666283..666404 | TCONS_00052252-exon-scaffold_213-1575043694:666283..666404 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1491911889:666635..666856 | TCONS_00052252-exon-scaffold_213-1491911889:666635..666856 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1510915933:666635..666856 | TCONS_00052252-exon-scaffold_213-1510915933:666635..666856 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1575043694:666635..666856 | TCONS_00052252-exon-scaffold_213-1575043694:666635..666856 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1491911889:667524..668632 | TCONS_00052252-exon-scaffold_213-1491911889:667524..668632 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1510915933:667524..668632 | TCONS_00052252-exon-scaffold_213-1510915933:667524..668632 | Clytia hemisphaerica | exon |
| TCONS_00052252-exon-scaffold_213-1575043694:667524..668632 | TCONS_00052252-exon-scaffold_213-1575043694:667524..668632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:664640..668632 + |
Blast
The following BLAST results are available for this feature:
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