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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052248 ID=TCONS_00052248|Name=TCONS_00052248|organism=Clytia hemisphaerica|type=transcript|length=1211bp
GCCGAAACAAGGTATCTTTTAAGTTATAATGATGaaccaaaaaacaaaat
tttgaataatttgataaTTAATAAAAGTTGTTAATTAAAATAAGTTGTTA
ATTAAAATAAGTcgttattgaaaaataaaaacagttaaTAGAAATAAAGG
CACGTTGAACCTGAACCCGAGACCTGTAAATTTTTTCGTGAAATTTATAA
AGTCAACAATTTAAAATAACAGTGAGTTAAAAGCCTCTAATAGTAATTTG
ATCctcacaaaaataaatttctataTTCAAAGCAGTGATGGATTTCTGGT
GACATGGGGCATCTGAGTAAGATTTTAAATGGAAATGTAAATGTTTGaag
taaaactttttaaaaactgtttaaaattaTCATAATAAAAGTATAGAAAC
TAGAAAATAACTAGAAAATGTTAATACTACATAAAAGGGCCTCAATTTGG
AAGCCATTCGTTTTCTCTTTGAAACTCAACTCATCTCAAAGCTTACTAGA
CCACGAAAAGAAAGTCAAAGATAcaacaaacttttaaaaacaatattaCC
TACATTCTACCCCACCCTttaaaaacgttgaaaaataTATGACTAAATTT
ACTACTTACCTACTTTTTACTATACAGTATAACGTCTGTTTAAAACTTAA
CACCACAgctgtttttaaaaagctttagaTCCCcttattctgggttttct
cgATTTCTTTTTGGACGGTTCCTCTTGAAGAGTTATTTCTTGTTTAGTTT
TACGTTTATTTCTACCTTCTTTTTTGAGAGAAGCATCTTCACAATCATCC
AGAATTTCAATAGGGGTAGCTTCCTTCACATCAACAATTTCAACTGAAGA
GGTTACTGAAGGCGCCGGTGAAGCTTCATTAAGGATGGTAAGGGCGTTTA
GCTTCTCGTCTAAtgataaaatgaattttttgaattcttCTTCCGAGTGG
TCTGAGCAGACAGTCACATCCTGACGTAGTGGAAACAATTCTCCATCTTT
GTGAGTTTCACAATACGAATTGGTACACAAAGCACACATGGCTTTGGCAG
TTTTACCACACGTGTCACAGAAATGCCAAGGACATTCCCATTTGCCATAC
GGTTTCTTCTCCAAAGAGAGACATTTCAAGTGATAAGATTTTGTACATCC
ACCACGACTACACAATATTAGATCCCCTCCATCGTTGCATTGAAAACAAT
CATCTTCGTGA Run BLAST on NCBI transcript from alignment at scaffold_213:596910..598942+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052248 ID=TCONS_00052248|Name=TCONS_00052248|organism=Clytia hemisphaerica|type=transcript|length=2033bp|location=Sequence derived from alignment at scaffold_213:596910..598942+ (Clytia hemisphaerica)
GCCGAAACAAGGTATCTTTTAAGTTATAATGATGaaccaaaaaacaaaat
tttgaataatttgataaTTAATAAAAGTTGTTAATTAAAATAAGTTGTTA
ATTAAAATAAGTcgttattgaaaaataaaaacagttaaTAGAAATAAAGG
CACGTTGAACCTGAACCCGAGACCTGTAAATTTTTTCGTGAAATTTATAA
AGTCAACAATTTAAAATAACAGTGAGTTAAAAGCCTCTAATAGTAATTTG
ATCctcacaaaaataaatttctataTTCAAAGCAGTGATGGATTTCTGGT
GACATGGGGCATCTGAGTAAGATTTTAAATGGAAATGTAAATGTTTGaag
taaaactttttaaaaactgtttaaaattaTCATAATAAAAGTATAGAAAC
TAGAAAATAACTAGAAAATGTTAATACTAGCAGTGGGCTATAGAGacctt
tcttttcaaaattaagtttgcataattttttttggttggttgggacccaa
ataacataaatctaagatatttttggatatttccaaatgcccaaaatggg
ccattttcgggccattttgcttggaaaaaaaatctaaaacctgctgtgtt
ggtgctacaacCATCAAATTAGGCTCAAAATGATCCTTGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAA
TATCTTAGATTTATGTTATTTGGGTCccaaccaaccaaaaaaaattatgc
aaacttaattttgaaaaaaaaggtctctATAGCCCACTGCTATTAATACA
GCATAAAAGGGCCTCAATTTGGAAGCCATTCGTTTTCTCTTTGAAACTCA
ACTCATCTCAAAGCTTACTAGACCACGAAAAGAAAGTCAAAGATAcaaca
aacttttaaaaacaatattaCCTACATTCTACCCCACCCTttaaaaacgt
tgaaaaataTATGACTAAATTTACTACTTACCTACTTTTTACTATACAGT
ATAACGTCTGTTTAAAACTTAACACCACAgctgtttttaaaaagctttag
aTCCCcttattctgggttttctcgATTTCTTTTTGGACGGTTCCTCTTGA
AGAGTTATTTCTTGTTTAGTTTTACGTTTATTTCTACCTTCTTTTTTGAG
AGAAGCATCTTCACAATCATCCAGAATTTCAATAGGGGTAGCTTCCTTCA
CATCAACAATTTCAACTGAAGAGGTTACTGAAGGCGCCGGTGAAGCTTCA
TTAAGGATGGTAAGGGCGTTTAGCTTCTCGTCTAAtgataaaatgaattt
tttgaattcttCTTCCGAGTGGTCTGAGCAGACAGTCACATCCTGACGTA
GTGGAAACAATTCTCCATCTTTGTGAGTTTCACAATACGAATTGGTACAC
AAAGCACACATGGCTTTGGCAGTTTTACCACACGTGTCACAGAAATGCCA
AGGACATTCCCATTTGCCATACGGTTTCTTCTCCAAAGAGAGACATTTCA
AGTGATAAGATTTTGTACATCCACCACGACTACACAATATTAGATCCCCT
CCATCGTTGCATTGAAAACAATCATCTTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052248-exon-scaffold_213-1491911889:596910..597338 | TCONS_00052248-exon-scaffold_213-1491911889:596910..597338 | Clytia hemisphaerica | exon |
| TCONS_00052248-exon-scaffold_213-1510915933:596910..597338 | TCONS_00052248-exon-scaffold_213-1510915933:596910..597338 | Clytia hemisphaerica | exon |
| TCONS_00052248-exon-scaffold_213-1575043694:596910..597338 | TCONS_00052248-exon-scaffold_213-1575043694:596910..597338 | Clytia hemisphaerica | exon |
| TCONS_00052248-exon-scaffold_213-1491911889:598161..598942 | TCONS_00052248-exon-scaffold_213-1491911889:598161..598942 | Clytia hemisphaerica | exon |
| TCONS_00052248-exon-scaffold_213-1510915933:598161..598942 | TCONS_00052248-exon-scaffold_213-1510915933:598161..598942 | Clytia hemisphaerica | exon |
| TCONS_00052248-exon-scaffold_213-1575043694:598161..598942 | TCONS_00052248-exon-scaffold_213-1575043694:598161..598942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:596910..598942 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052248 vs. Swiss-Prot (Human)
Match: NSD2 (Histone-lysine N-methyltransferase NSD2 OS=Homo sapiens GN=NSD2 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.746e-28 Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = -2
Query: 983 EDDCFQCNDGGDLILCSRGGCTKSYHLKCLSLEKKPYGKWECPWHFCDTCGKTAKAMCALCTNSYCETHKDGELF 1207
ED+CF+C DGG L+LC R CTK+YHL CL L K+P+GKWECPWH CD CGK + + C LC NS+C+ H+DG F
Sbjct: 1239 EDECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFGKWECPWHHCDVCGKPSTSFCHLCPNSFCKEHQDGTAF 1313
The following BLAST results are available for this feature:
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