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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052241 ID=TCONS_00052241|Name=TCONS_00052241|organism=Clytia hemisphaerica|type=transcript|length=2778bp
TTTCTCTTCTACTTTTTTGGTAGAGATCAAAAACAGAGCAAGAAGAACGG
TTATAGAAAAAGATAAAGCATGGCTACAACAGATAACTTTGAAGGTATTG
ATCCGGCCTTAATCCGTCAAGAACAAGCTTTAGAAGAATACGGTTTAATC
GATCGAGTTCGGCTGTCTGAACCTTTGTCGGGAGAAGATCCGAGTACCGC
GACAAAAAGTAACAATTTCTTCTATACTTACTCCTTAAAAGGAGATGGAC
GACGAACAACCATCGTATGTGTGATCTTTGTTCTTCTGTTTGTGGGTTGG
ACTGGTTACACTTTGTGTGAAGTCATCCTCCAACCTGCTGAGAATGGAAA
GAAAACAGCAGAACAACATCATGATCATATTAGCAAATATTCTCATCCAG
TTTGCGGCAAAATACAATGTGCAGGCGATTGTTCAGAAAAGAAGCGTTCT
CGTCGTGTGGTTAGCGGCGCCGATGTTCGACACGGGGACTGGCCCTGGAT
GGCCGGCCTCACATTGGATAAGAAGTTTCGGTGTGGAGGAGTTCTTGTCA
ATGAGTTGCATGTGCTGACGTCAGCTCATTGTCTCTACCGAAGAGGAGAG
AAATTGGACTCGAATCAAATTCAAATATTCCTCGGGAGTGTCCATCGCTC
AGAAGAAAAACTCGAACCATCGAAAGTAAGGCTTGCAGTAAAAGATTTGA
TCATACACAAACAGTTTGATCCAAAAACTTTGGAAAATGATATTGCACTG
GTGAAATTAACAGATGATGTGACTTTCTCAAAGTCTATCCAGCCTGTTTG
TTTACCAAAATATTCTGCTGATGCACCCGGTTACATGCTGGGTTGGGGTA
AGTTCAAACCAGACGGTCCTCTTTCACCAAAGCTTCAACAAGTGAAAATG
CCACTGGTCACCAATCAACAATGTCAAAAGCagaacaacaaaattttcag
gCGAGTCAAGGTTCACTCAGAAAATCACATTTGCATTGGTCATGGTGCGC
AAAGTCCTGAATACGCATGTGCAGGAGATAGTGGGAGTGGTTTCTTTCAA
CAGAAAAAAGGGATGTGGTTTCTACAAGGCTTGGTTTCCTGGATTGATCC
CTCTTGCAATTCAACCCTTCACAATACTTACACCGTGTTAACAAATGTTG
CTAAATACGAAAATTGGATAGGTGAAAACATACACCTTTAAGAAATATTT
CATGGCCTGGCTtcaaaactgtaaaaaaatttagagtaagtaagtaagta
atgaATTTATTTGTCATAATAAGCTAGACGAGCGACCACATCAACTAAGG
AGGCTGCATGCTACTGTTGCAAGAAAAAATAGCccgggggtactaccctt
gctgactgacgggggtgctccgctgaggtttgaaaaatggacctagttgg
gactcgttttttcaaaaattttgccgaaattttcagtgaccctgaatggg
actgaaattccaaaattttttcaaatattacctACGAGAGAATTGTGTAT
TAACCCAAGGTTTTGCATGAGACGGAACTTCTTTTAACTTTGAGGGGATT
AATGTGTTATTTTAAGCTCCGTTTAAAGTGAGTCTGAATGTTATTTATCA
AAGGTCATGGGAAGTTTTCTAAACAGTCTTCTTTGTCAAGAAGTTGGGAG
TTTGAGCCCCCATCCCTGACGACGGGACCTACGTTTGTGGACTGAATTAA
TTTTCCTGAAACTGTACATAGAAACGTGTAGTTTTCAACAATTCCAGACT
GTTGTATAAAACTCCTGCATTCTGAATAGGGTGTTTAAGTTTTTTCCCTA
AACACTTCCATCAAAGATTTTGTAGCGTGTCTTACTCAGTCTTATTTCCT
TTGATTACTGAGAGAGTTTCAAgtcttgaaaatttaaaatttgattaTTA
GTAATAGtataggcgagaccaatttaatttgttgttctacgggcagatcg
ttagaaaaatatgggtcggtcggtaaaacaagaataaatttttcatttat
cagggttggtaaggtaccgaaaatattttccaaaaaatatctggatcaac
aattcattatttttatgttcgatgaagatcataataagattttagtgtat
ggaatgcttgattttctaaatttttcaattttttgaattcattttcagct
ttatcatattcaaattttattctATTGTACTGTAGTTGAAATtcaatatc
attattttttttatttaagccAAAATTAAGTACAGTAGCACAACAAATTG
AATTGGTCTCGCGGTCTCGCCTAATGTACATAGTAATATTAAGAGGTTTT
TATTTACGCTCAATTTTTAACCCACCTACAGCAAATTATTtacaacaatt
tttttattgagATTTTGACGGATTCATTTTATATATATTTGGATAGTGTA
CTTAAGGGTTATTTTATTTCAGTATTGACGGTTTGAGCTTATTTATATTG
ACTTGACAAAGCGTCCAGAGTTGCAGGTTTTTAGTTGAAATGGGACTTAC
ATTTTCTCATTCAGTTTTGAGAGCTTTTGCAAGTCCTTTCGTGATCACTT
CGCCTACGGCGTTTATTGGATAATTTATACTGTAAGTTATTTCAACAGAT
TTTATTTGAGTTATATATTTATGATTTGATATTAAGAttaagtactctcg
ggtacttaatagccgggggggccccgctaattaatttttcgaaaattttc
cacccaggacattcttattccacccccccccccgcttattgatttttggg
aattttttttttgaaagttctctctttt Run BLAST on NCBI transcript from alignment at scaffold_213:423933..429857+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052241 ID=TCONS_00052241|Name=TCONS_00052241|organism=Clytia hemisphaerica|type=transcript|length=5925bp|location=Sequence derived from alignment at scaffold_213:423933..429857+ (Clytia hemisphaerica)
TTTCTCTTCTACTTTTTTGGTAGAGATCAAAAACAGAGCAAGAAGAACGG
TTATAGAAAAAGATAAAGGTATaaagttttcatatttttggcttttttta
tttgaaagtggTTATTGGCAGCGCTTCTTGTAAAAAACAGAACATCACCC
AAAATACGACAATGATTTATTTGTCATTTCAAAGATCGCGCACATGTGTC
TATTTTGCTGATGCTCTCTTTTTCAAATAGATTTTTAAGCAGTCTAATAA
ACAATTTGATCACGGGAAATTTGCATTTATTTAGATTCatccaaattttc
aataagttgAACTATAATTATGCTTTGGCATTTTGggatttcattttaat
ttaaaaatgttGTCATTTTACTCGTTgtttatttaataatttttttttat
tttgttccaGCAGCATGGCTACAACAGATAACTTTGAAGGTATTGATCCG
GCCTTAATCCGTCAAGAACAAGCTTTAGAAGAATACGGTTTAATCGATCG
AGTTCGGCTGTCTGAACCTTTGTCGGGAGAAGATCCGAGTACCGCGACAA
AAAGTAACAATTTCTTCTATACTTACTCCTTAAAAGGAGATGGACGACGA
ACAACCATCGTATGTGTGATCTTTGTTCTTCTGTTTGTGGGTTGGACTGG
TTACACTTTGTGTGAAGTCATCCTCCAACCTGCTGAGAATGGAAAGAAAA
CAGCAGAACAACATCATGATCATATTAGCAAATATTCTCATCCAGTTTGC
GGCAAAATACAATGTGCAGGTATTGTGGTAttattgttttctatttttct
cttATGTAGGGCCTATGTAGTGCGTCTGAAAGAAAGTGGAACaaattgaa
tttaaagaaaaagcctcaaaatgttaaCCTCCATATAACGAGATCTTTGC
ATTGTCGATAAGTTTCATTGGCCTTTATAAATACAAAACTTATGAGGGCT
TTTccatattcaaaatctgatttttGTGACAACATTGTATTATTCAGCGT
TTTGTTACTAGTAGGGGGTTCGGAGCAttgatttataaagcccgaagtgc
tagatatcgtgctttaagccatcgcaagCAAAAAAAACGAATATCGGAGG
ATTTCCTACTTAACCACGACACACTTTTCAGccgaagcacgacatctagc
ccttcggagtAGCTGGTATGTGTGAATAGATTTTCTTCTGaaataaaaac
gaaaatgataaaaaatatgggTTAGAAAAAGGGTGAAAAGGCAACTCTTT
TTTTAATGCACACTAACTCGACCAGCAATAAGACATAAATAAAGTTGGAA
TTTACCCCTTGTTTTTGTTCGTTCATAATGAGGATTGATAATCCACATTG
TGGGTAAGAAAATACTTTCTATTAGACTACCTACGTGCGTATCTTATTGT
TTTGAGGTATATTATGATATTAATTATCACCTGCGTCTTTTCAGTgctaa
attattattttatattttaccaaCTGCCTTTTAGGGGACCGCACCCTCtt
ttattagcgagtttatatattcgagataaatcgagggggacagtataaag
caaagttgacatgtctccaaaatcaccgtccactttgctcgacgacggta
aaaacaccaaaataacgtcgtctgtttaggtgagcaaaggcgatatagag
ccgtacatcaactatcgtttttgttttgtatcatttcacttacTGTCGCC
CtagatatcctccgatacataaactcggtattatctTTACTGGtgccaaa
aaacaatttttatttttccggaaCTATCGATCGTTTTTATGTGACCGAAA
AAGTTTATCAATCGCACCTCTTTCGTCCCaaagtttttaaagatttcaaG
AGCGTGTTTTGGCAACTAAGTATTAGTCAGCGAAGGGAGGAACTTTTGCA
TCAAAACAAGAATTTGAAGATATATAAACAGTTCCTGTGAATTCTTTCAG
AAATTGTTTCATAACTAGGCTCATAAAATGATCTTACTAGATTATTTGTA
CTCCATCGGTGAATACTTTGgcgtgtttttctttttcaaacattttgtcG
TTTGGACCCTCTAGCTTTGGGAAGAGTTTTCACAAATGTTACAATTAATA
TTCTCAATAGTATTTAGAAAACAGTATGATTGGGTTCAGTATACTTAGCT
GTGTAAGTTttattatgtttaaaaaaattgcaagaacAATGAGATCAACC
GATAGAAAACGTACTGTTTCGCCATTATAAGCTTTCTTTCCTTCCAATAG
GCGATTGTTCAGAAAAGAAGCGTTCTCGTCGTGTGGTTAGCGGCGCCGAT
GTTCGACACGGGGACTGGCCCTGGATGGCCGGCCTCACATTGGATAAGAA
GTTTCGGTGTGGAGGAGTTCTTGTCAATGAGTTGCATGTGCTGACGTCAG
CTCATTGTCTCTACCGAAGAGGAGAGAAATTGGACTCGAATCAAATTCAA
ATATTCCTCGGTAttgtttttcaatcaaataCTTCTTTTGCTCTTATTTC
ACTACTACTCCATTatatttgaaaatctttctgCATGGCAAAGTACCAAT
GCAAGAAACGAACAGTGCGCAGCGATTGAAATactattcaaaaactttat
gCGAGCccactttttttcttcagaaataattaaatattttaagaacTTGA
GGCTCGATTCTCGTAAGTTTTGACACAGTTACGTAAGCTAAATAAGACTC
TCATAAGTTTCAAAGCATATACTGATTTTCGGTTTTCGGTTGACATAAGG
CCATTTTATCTTGAAAATCTTATGCGAATACGTATTATTACAGAAAATCT
TATACAAATGCCTTTGTTACAGTGTTCCAAGGTTcaagtttctttctttt
caaacgGATTTTCATCTTTCCATGTTAAATAATATTTGTTTCAAATTTAC
TTCAGCgaaattcaatcaaatataTTGAATCTTAGCTAAATAATTTCCTT
TGTGAAGAAAGCTTCGCTTCGACCACAAACGAGGTATAANccactagatc
aaaagttaaggggtggtacaggatcAGCccctgaaccgcccctaaaagca
taggttgaatagggttataAGATAAGGTAGTTTCTTTTTTCACTCGGTTG
TATGTTATTATGAAAATCCAACTTTTCCATTTGAAACTTTAGGGAGTGTC
CATCGCTCAGAAGAAAAACTCGAACCATCGAAAGTAAGGCTTGCAGTAAA
AGATTTGATCATACACAAACAGTTTGATCCAAAAACTTTGGAAAATGATA
TTGCACTGGTGAAATTAACAGATGATGTGACTTTCTCAAAGTCTATCCAG
CCTGTTTGTTTACCAAAATATTCTGCTGATGCACCCGGTTACATGCTGGG
TAAGGCTTATATccaaatgttttaattttttttatcaatgggctcttcca
gaaaaaaaaccattATAGGGGATGGAAGATATTTTGTCTAGGGGTATCga
aaaaatcccgaaaaacTGTCATGTCCATAAGGTGAATTTGTAATGTCCAG
GGGTGAATTTTAGTGACCAGGGGGTCGAATTGATGTTTGCTCAGGGGTAA
AACGCGTGTCCAGgaggtgaaaaattgaaacgtCCAGGGGCAGATCATTA
AAAAAATAGTATACCTTCCAcccccatgaacgaattttttctggatGAGC
CCAATCAAAAGACTTCTACAAGCATCGATCAATTACTTGTTCGATACCTT
GACATTAACAAAATTGTAAGATGATCCCTTACTACCTCCCGCATAAAACT
caatatacccctgtctcgctGAGTGCTTGGCATCTAGATTTCAAAAGTGG
TTGCTAAGAAGACATTCCACTATTTTCTAATTTGATTCACCAGATTCAAC
TCTGGACGACTTCACTATCATTGCCAGAAAATTTTTCCATCGTGGCGATT
TGTTCCCATTAAACCTTGCTATGACATTGGTTTTTTAAAAGCGGTTATTA
TTGAAGAAAACGTACGttatacatatatttttcaacaGGTTGGGGTAAGT
TCAAACCAGACGGTCCTCTTTCACCAAAGCTTCAACAAGTGAAAATGCCA
CTGGTCACCAATCAACAATGTCAAAAGCagaacaacaaaattttcaggCG
AGTCAAGGTTCACTCAGAAAATCACATTTGCATTGGTCATGGTGCGCAAA
GTCCTGAATACGCATGTGCAGGAGATAGTGGGAGTGGTTTCTTTCAACAG
AAAAAAGGGATGTGGTTTCTACAAGGCTTGGTTTCCTGGATTGATCCCTC
TTGCAATTCAACCCTTCACAATACTTACACCGTGTTAACAAATGTTGCTA
AATACGAAAATTGGATAGGTGAAAACATACACCTTTAAGAAATATTTCAT
GGCCTGGCTtcaaaactgtaaaaaaatttagagtaagtaagtaagtaatg
aATTTATTTGTCATAATAAGCTAGACGAGCGACCACATCAACTAAGGAGG
CTGCATGCTACTGTTGCAAGAAAAAATAGCccgggggtactacccttgct
gactgacgggggtgctccgctgaggtttgaaaaatggacctagttgggac
tcgttttttcaaaaattttgccgaaattttcagtgaccctgaatgggact
gaaattccaaaattttttcaaatattacctACGAGAGAATTGTGTATTAA
CCCAAGGTTTTGCATGAGACGGAACTTCTTTTAACTTTGAGGGGATTAAT
GTGTTATTTTAAGCTCCGTTTAAAGTGAGTCTGAATGTTATTTATCAAAG
GTCATGGGAAGTTTTCTAAACAGTCTTCTTTGTCAAGAAGTTGGGAGTTT
GAGCCCCCATCCCTGACGACGGGACCTACGTTTGTGGACTGAATTAATTT
TCCTGAAACTGTACATAGAAACGTGTAGTTTTCAACAATTCCAGACTGTT
GTATAAAACTCCTGCATTCTGAATAGGGTGTTTAAGTTTTTTCCCTAAAC
ACTTCCATCAAAGATTTTGTAGCGTGTCTTACTCAGTCTTATTTCCTTTG
ATTACTGAGAGAGTTTCAAgtcttgaaaatttaaaatttgattaTTAGTA
ATAGtataggcgagaccaatttaatttgttgttctacgggcagatcgtta
gaaaaatatgggtcggtcggtaaaacaagaataaatttttcatttatcag
ggttggtaaggtaccgaaaatattttccaaaaaatatctggatcaacaat
tcattatttttatgttcgatgaagatcataataagattttagtgtatgga
atgcttgattttctaaatttttcaattttttgaattcattttcagcttta
tcatattcaaattttattctATTGTACTGTAGTTGAAATtcaatatcatt
attttttttatttaagccAAAATTAAGTACAGTAGCACAACAAATTGAAT
TGGTCTCGCGGTCTCGCCTAATGTACATAGTAATATTAAGAGGTTTTTAT
TTACGCTCAATTTTTAACCCACCTACAGCAAATTATTtacaacaattttt
ttattgagATTTTGACGGATTCATTTTATATATATTTGGATAGTGTACTT
AAGGGTTATTTTATTTCAGTATTGACGGTTTGAGCTTATTTATATTGACT
TGACAAAGCGTCCAGAGTTGCAGGTTTTTAGTTGAAATGGGACTTACATT
TTCTCATTCAGTTTTGAGAGCTTTTGCAAGTCCTTTCGTGATCACTTCGC
CTACGGCGTTTATTGGATAATTTATACTGTAAGTTATTTCAACAGATTTT
ATTTGAGTTATATATTTATGATTTGATATTAAGAttaagtactctcgggt
acttaatagccgggggggccccgctaattaatttttcgaaaattttccac
ccaggacattcttattccacccccccccccgcttattgatttttgggaat
tttttttttgaaagttctctctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052241-exon-scaffold_213-1491911889:423933..424000 | TCONS_00052241-exon-scaffold_213-1491911889:423933..424000 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1510915933:423933..424000 | TCONS_00052241-exon-scaffold_213-1510915933:423933..424000 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1575043694:423933..424000 | TCONS_00052241-exon-scaffold_213-1575043694:423933..424000 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1491911889:424346..424701 | TCONS_00052241-exon-scaffold_213-1491911889:424346..424701 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1510915933:424346..424701 | TCONS_00052241-exon-scaffold_213-1510915933:424346..424701 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1575043694:424346..424701 | TCONS_00052241-exon-scaffold_213-1575043694:424346..424701 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1491911889:426183..426392 | TCONS_00052241-exon-scaffold_213-1491911889:426183..426392 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1510915933:426183..426392 | TCONS_00052241-exon-scaffold_213-1510915933:426183..426392 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1575043694:426183..426392 | TCONS_00052241-exon-scaffold_213-1575043694:426183..426392 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1491911889:427075..427281 | TCONS_00052241-exon-scaffold_213-1491911889:427075..427281 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1510915933:427075..427281 | TCONS_00052241-exon-scaffold_213-1510915933:427075..427281 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1575043694:427075..427281 | TCONS_00052241-exon-scaffold_213-1575043694:427075..427281 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1491911889:427921..429857 | TCONS_00052241-exon-scaffold_213-1491911889:427921..429857 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1510915933:427921..429857 | TCONS_00052241-exon-scaffold_213-1510915933:427921..429857 | Clytia hemisphaerica | exon |
| TCONS_00052241-exon-scaffold_213-1575043694:427921..429857 | TCONS_00052241-exon-scaffold_213-1575043694:427921..429857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:423933..429857 + |
Blast
BLAST of TCONS_00052241 vs. Swiss-Prot (Human)
Match: PRS48 (Serine protease 48 OS=Homo sapiens GN=PRSS48 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.865e-33 Identity = 89/261 (34.10%), Postives = 130/261 (49.81%), Query Frame = 1
Query: 430 CSEKKRSRRVVSGADVRHGDWPWMAGLTLDKKFRCGGVLVNELHVLTSAHCLYRRGEKLDSNQIQIFLGSVHRSEEKLEPSKVRLAVKDLIIHKQFDPKTLENDIALVKLTDDVTFSKSIQPVCLP---KYSADAP-GYMLGWGKFK--PDGPLSPKLQQVKMPLVTNQQCQKQNNKIFRRV----KVHSENHICIGHGAQSPEYACAGDSGSGFFQQKKGMWFLQGLVSWIDPSCNSTLHNTYTVLTNVAKYENWIGENI 1182
C + S RVV G D G WPW L D F CGG LV+E +LT+AHC+ + ++LGS+ + + +V+ V ++IH ++ T D+AL+KL+ VTF+ +I P+CLP K A P ++ GWGK K D LQ+ ++P++ Q C++ N I + V E+ IC G Q+ + +C GDSG G+W G+VSW C +L Y TNV Y+ WI I
Sbjct: 19 CGQPVYSSRVVGGQDAAAGRWPWQVSLHFDHNFICGGSLVSERLILTAAHCIQ---PTWTTFSYTVWLGSITVGDSR---KRVKYYVSKIVIHPKYQDTT--ADVALLKLSSQVTFTSAILPICLPSVTKQLAIPPFCWVTGWGKVKESSDRDYHSALQEAEVPIIDRQACEQLYNPIGIFLPALEPVIKEDKICAGD-TQNMKDSCKGDSGGPLSCHIDGVWIQTGVVSW-GLECGKSLPGVY---TNVIYYQKWINATI 266
The following BLAST results are available for this feature:
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