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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052240 ID=TCONS_00052240|Name=TCONS_00052240|organism=Clytia hemisphaerica|type=transcript|length=2812bp
TTTCACTTTGCTCTAGCTTCAATAAATGTTCTTTCTCTTCTACTTTTTTG
GTAGAGATCAAAAACAGAGCAAGAAGAACGGTTATAGAAAAAGATAAAGC
AGCATGGCTACAACAGATAACTTTGAAGGTATTGATCCGGCCTTAATCCG
TCAAGAACAAGCTTTAGAAGAATACGGTTTAATCGATCGAGTTCGGCTGT
CTGAACCTTTGTCGGGAGAAGATCCGAGTACCGCGACAAAAAGTAACAAT
TTCTTCTATACTTACTCCTTAAAAGGAGATGGACGACGAACAACCATCGT
ATGTGTGATCTTTGTTCTTCTGTTTGTGGGTTGGACTGGTTACACTTTGT
GTGAAGTCATCCTCCAACCTGCTGAGAATGGAAAGAAAACAGCAGAACAA
CATCATGATCATATTAGCAAATATTCTCATCCAGTTTGCGGCAAAATACA
ATGTGCAGGCGATTGTTCAGAAAAGAAGCGTTCTCGTCGTGTGGTTAGCG
GCGCCGATGTTCGACACGGGGACTGGCCCTGGATGGCCGGCCTCACATTG
GATAAGAAGTTTCGGTGTGGAGGAGTTCTTGTCAATGAGTTGCATGTGCT
GACGTCAGCTCATTGTCTCTACCGAAGAGGAGAGAAATTGGACTCGAATC
AAATTCAAATATTCCTCGGGAGTGTCCATCGCTCAGAAGAAAAACTCGAA
CCATCGAAAGTAAGGCTTGCAGTAAAAGATTTGATCATACACAAACAGTT
TGATCCAAAAACTTTGGAAAATGATATTGCACTGGTGAAATTAACAGATG
ATGTGACTTTCTCAAAGTCTATCCAGCCTGTTTGTTTACCAAAATATTCT
GCTGATGCACCCGGTTACATGCTGGGTTGGGGTAAGTTCAAACCAGACGG
TCCTCTTTCACCAAAGCTTCAACAAGTGAAAATGCCACTGGTCACCAATC
AACAATGTCAAAAGCagaacaacaaaattttcaggCGAGTCAAGGTTCAC
TCAGAAAATCACATTTGCATTGGTCATGGTGCGCAAAGTCCTGAATACGC
ATGTGCAGGAGATAGTGGGAGTGGTTTCTTTCAACAGAAAAAAGGGATGT
GGTTTCTACAAGGCTTGGTTTCCTGGATTGATCCCTCTTGCAATTCAACC
CTTCACAATACTTACACCGTGTTAACAAATGTTGCTAAATACGAAAATTG
GATAGGTGAAAACATACACCTTTAAGAAATATTTCATGGCCTGGCTtcaa
aactgtaaaaaaatttagagtaagtaagtaagtaatgaATTTATTTGTCA
TAATAAGCTAGACGAGCGACCACATCAACTAAGGAGGCTGCATGCTACTG
TTGCAAGAAAAAATAGCccgggggtactacccttgctgactgacgggggt
gctccgctgaggtttgaaaaatggacctagttgggactcgttttttcaaa
aattttgccgaaattttcagtgaccctgaatgggactgaaattccaaaat
tttttcaaatattacctACGAGAGAATTGTGTATTAACCCAAGGTTTTGC
ATGAGACGGAACTTCTTTTAACTTTGAGGGGATTAATGTGTTATTTTAAG
CTCCGTTTAAAGTGAGTCTGAATGTTATTTATCAAAGGTCATGGGAAGTT
TTCTAAACAGTCTTCTTTGTCAAGAAGTTGGGAGTTTGAGCCCCCATCCC
TGACGACGGGACCTACGTTTGTGGACTGAATTAATTTTCCTGAAACTGTA
CATAGAAACGTGTAGTTTTCAACAATTCCAGACTGTTGTATAAAACTCCT
GCATTCTGAATAGGGTGTTTAAGTTTTTTCCCTAAACACTTCCATCAAAG
ATTTTGTAGCGTGTCTTACTCAGTCTTATTTCCTTTGATTACTGAGAGAG
TTTCAAgtcttgaaaatttaaaatttgattaTTAGTAATAGtataggcga
gaccaatttaatttgttgttctacgggcagatcgttagaaaaatatgggt
cggtcggtaaaacaagaataaatttttcatttatcagggttggtaaggta
ccgaaaatattttccaaaaaatatctggatcaacaattcattatttttat
gttcgatgaagatcataataagattttagtgtatggaatgcttgattttc
taaatttttcaattttttgaattcattttcagctttatcatattcaaatt
ttattctATTGTACTGTAGTTGAAATtcaatatcattattttttttattt
aagccAAAATTAAGTACAGTAGCACAACAAATTGAATTGGTCTCGCGGTC
TCGCCTAATGTACATAGTAATATTAAGAGGTTTTTATTTACGCTCAATTT
TTAACCCACCTACAGCAAATTATTtacaacaatttttttattgagATTTT
GACGGATTCATTTTATATATATTTGGATAGTGTACTTAAGGGTTATTTTA
TTTCAGTATTGACGGTTTGAGCTTATTTATATTGACTTGACAAAGCGTCC
AGAGTTGCAGGTTTTTAGTTGAAATGGGACTTACATTTTCTCATTCAGTT
TTGAGAGCTTTTGCAAGTCCTTTCGTGATCACTTCGCCTACGGCGTTTAT
TGGATAATTTATACTGTAAGTTATTTCAACAGATTTTATTTGAGTTATAT
ATTTATGATTTGATATTAAGAttaagtactctcgggtacttaatagccgg
gggggccccgctaattaatttttcgaaaattttccacccaggacattctt
attccacccccccccccgcttattgatttttgggaattttttttttgaaa
gttctctctttt Run BLAST on NCBI transcript from alignment at scaffold_213:423902..429857+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052240 ID=TCONS_00052240|Name=TCONS_00052240|organism=Clytia hemisphaerica|type=transcript|length=5956bp|location=Sequence derived from alignment at scaffold_213:423902..429857+ (Clytia hemisphaerica)
TTTCACTTTGCTCTAGCTTCAATAAATGTTCTTTCTCTTCTACTTTTTTG
GTAGAGATCAAAAACAGAGCAAGAAGAACGGTTATAGAAAAAGATAAAGG
TATaaagttttcatatttttggctttttttatttgaaagtggTTATTGGC
AGCGCTTCTTGTAAAAAACAGAACATCACCCAAAATACGACAATGATTTA
TTTGTCATTTCAAAGATCGCGCACATGTGTCTATTTTGCTGATGCTCTCT
TTTTCAAATAGATTTTTAAGCAGTCTAATAAACAATTTGATCACGGGAAA
TTTGCATTTATTTAGATTCatccaaattttcaataagttgAACTATAATT
ATGCTTTGGCATTTTGggatttcattttaatttaaaaatgttGTCATTTT
ACTCGTTgtttatttaataatttttttttattttgttccaGCAGCATGGC
TACAACAGATAACTTTGAAGGTATTGATCCGGCCTTAATCCGTCAAGAAC
AAGCTTTAGAAGAATACGGTTTAATCGATCGAGTTCGGCTGTCTGAACCT
TTGTCGGGAGAAGATCCGAGTACCGCGACAAAAAGTAACAATTTCTTCTA
TACTTACTCCTTAAAAGGAGATGGACGACGAACAACCATCGTATGTGTGA
TCTTTGTTCTTCTGTTTGTGGGTTGGACTGGTTACACTTTGTGTGAAGTC
ATCCTCCAACCTGCTGAGAATGGAAAGAAAACAGCAGAACAACATCATGA
TCATATTAGCAAATATTCTCATCCAGTTTGCGGCAAAATACAATGTGCAG
GTATTGTGGTAttattgttttctatttttctcttATGTAGGGCCTATGTA
GTGCGTCTGAAAGAAAGTGGAACaaattgaatttaaagaaaaagcctcaa
aatgttaaCCTCCATATAACGAGATCTTTGCATTGTCGATAAGTTTCATT
GGCCTTTATAAATACAAAACTTATGAGGGCTTTTccatattcaaaatctg
atttttGTGACAACATTGTATTATTCAGCGTTTTGTTACTAGTAGGGGGT
TCGGAGCAttgatttataaagcccgaagtgctagatatcgtgctttaagc
catcgcaagCAAAAAAAACGAATATCGGAGGATTTCCTACTTAACCACGA
CACACTTTTCAGccgaagcacgacatctagcccttcggagtAGCTGGTAT
GTGTGAATAGATTTTCTTCTGaaataaaaacgaaaatgataaaaaatatg
ggTTAGAAAAAGGGTGAAAAGGCAACTCTTTTTTTAATGCACACTAACTC
GACCAGCAATAAGACATAAATAAAGTTGGAATTTACCCCTTGTTTTTGTT
CGTTCATAATGAGGATTGATAATCCACATTGTGGGTAAGAAAATACTTTC
TATTAGACTACCTACGTGCGTATCTTATTGTTTTGAGGTATATTATGATA
TTAATTATCACCTGCGTCTTTTCAGTgctaaattattattttatatttta
ccaaCTGCCTTTTAGGGGACCGCACCCTCttttattagcgagtttatata
ttcgagataaatcgagggggacagtataaagcaaagttgacatgtctcca
aaatcaccgtccactttgctcgacgacggtaaaaacaccaaaataacgtc
gtctgtttaggtgagcaaaggcgatatagagccgtacatcaactatcgtt
tttgttttgtatcatttcacttacTGTCGCCCtagatatcctccgataca
taaactcggtattatctTTACTGGtgccaaaaaacaatttttatttttcc
ggaaCTATCGATCGTTTTTATGTGACCGAAAAAGTTTATCAATCGCACCT
CTTTCGTCCCaaagtttttaaagatttcaaGAGCGTGTTTTGGCAACTAA
GTATTAGTCAGCGAAGGGAGGAACTTTTGCATCAAAACAAGAATTTGAAG
ATATATAAACAGTTCCTGTGAATTCTTTCAGAAATTGTTTCATAACTAGG
CTCATAAAATGATCTTACTAGATTATTTGTACTCCATCGGTGAATACTTT
GgcgtgtttttctttttcaaacattttgtcGTTTGGACCCTCTAGCTTTG
GGAAGAGTTTTCACAAATGTTACAATTAATATTCTCAATAGTATTTAGAA
AACAGTATGATTGGGTTCAGTATACTTAGCTGTGTAAGTTttattatgtt
taaaaaaattgcaagaacAATGAGATCAACCGATAGAAAACGTACTGTTT
CGCCATTATAAGCTTTCTTTCCTTCCAATAGGCGATTGTTCAGAAAAGAA
GCGTTCTCGTCGTGTGGTTAGCGGCGCCGATGTTCGACACGGGGACTGGC
CCTGGATGGCCGGCCTCACATTGGATAAGAAGTTTCGGTGTGGAGGAGTT
CTTGTCAATGAGTTGCATGTGCTGACGTCAGCTCATTGTCTCTACCGAAG
AGGAGAGAAATTGGACTCGAATCAAATTCAAATATTCCTCGGTAttgttt
ttcaatcaaataCTTCTTTTGCTCTTATTTCACTACTACTCCATTatatt
tgaaaatctttctgCATGGCAAAGTACCAATGCAAGAAACGAACAGTGCG
CAGCGATTGAAATactattcaaaaactttatgCGAGCccactttttttct
tcagaaataattaaatattttaagaacTTGAGGCTCGATTCTCGTAAGTT
TTGACACAGTTACGTAAGCTAAATAAGACTCTCATAAGTTTCAAAGCATA
TACTGATTTTCGGTTTTCGGTTGACATAAGGCCATTTTATCTTGAAAATC
TTATGCGAATACGTATTATTACAGAAAATCTTATACAAATGCCTTTGTTA
CAGTGTTCCAAGGTTcaagtttctttcttttcaaacgGATTTTCATCTTT
CCATGTTAAATAATATTTGTTTCAAATTTACTTCAGCgaaattcaatcaa
atataTTGAATCTTAGCTAAATAATTTCCTTTGTGAAGAAAGCTTCGCTT
CGACCACAAACGAGGTATAANccactagatcaaaagttaaggggtggtac
aggatcAGCccctgaaccgcccctaaaagcataggttgaatagggttata
AGATAAGGTAGTTTCTTTTTTCACTCGGTTGTATGTTATTATGAAAATCC
AACTTTTCCATTTGAAACTTTAGGGAGTGTCCATCGCTCAGAAGAAAAAC
TCGAACCATCGAAAGTAAGGCTTGCAGTAAAAGATTTGATCATACACAAA
CAGTTTGATCCAAAAACTTTGGAAAATGATATTGCACTGGTGAAATTAAC
AGATGATGTGACTTTCTCAAAGTCTATCCAGCCTGTTTGTTTACCAAAAT
ATTCTGCTGATGCACCCGGTTACATGCTGGGTAAGGCTTATATccaaatg
ttttaattttttttatcaatgggctcttccagaaaaaaaaccattATAGG
GGATGGAAGATATTTTGTCTAGGGGTATCgaaaaaatcccgaaaaacTGT
CATGTCCATAAGGTGAATTTGTAATGTCCAGGGGTGAATTTTAGTGACCA
GGGGGTCGAATTGATGTTTGCTCAGGGGTAAAACGCGTGTCCAGgaggtg
aaaaattgaaacgtCCAGGGGCAGATCATTAAAAAAATAGTATACCTTCC
AcccccatgaacgaattttttctggatGAGCCCAATCAAAAGACTTCTAC
AAGCATCGATCAATTACTTGTTCGATACCTTGACATTAACAAAATTGTAA
GATGATCCCTTACTACCTCCCGCATAAAACTcaatatacccctgtctcgc
tGAGTGCTTGGCATCTAGATTTCAAAAGTGGTTGCTAAGAAGACATTCCA
CTATTTTCTAATTTGATTCACCAGATTCAACTCTGGACGACTTCACTATC
ATTGCCAGAAAATTTTTCCATCGTGGCGATTTGTTCCCATTAAACCTTGC
TATGACATTGGTTTTTTAAAAGCGGTTATTATTGAAGAAAACGTACGtta
tacatatatttttcaacaGGTTGGGGTAAGTTCAAACCAGACGGTCCTCT
TTCACCAAAGCTTCAACAAGTGAAAATGCCACTGGTCACCAATCAACAAT
GTCAAAAGCagaacaacaaaattttcaggCGAGTCAAGGTTCACTCAGAA
AATCACATTTGCATTGGTCATGGTGCGCAAAGTCCTGAATACGCATGTGC
AGGAGATAGTGGGAGTGGTTTCTTTCAACAGAAAAAAGGGATGTGGTTTC
TACAAGGCTTGGTTTCCTGGATTGATCCCTCTTGCAATTCAACCCTTCAC
AATACTTACACCGTGTTAACAAATGTTGCTAAATACGAAAATTGGATAGG
TGAAAACATACACCTTTAAGAAATATTTCATGGCCTGGCTtcaaaactgt
aaaaaaatttagagtaagtaagtaagtaatgaATTTATTTGTCATAATAA
GCTAGACGAGCGACCACATCAACTAAGGAGGCTGCATGCTACTGTTGCAA
GAAAAAATAGCccgggggtactacccttgctgactgacgggggtgctccg
ctgaggtttgaaaaatggacctagttgggactcgttttttcaaaaatttt
gccgaaattttcagtgaccctgaatgggactgaaattccaaaattttttc
aaatattacctACGAGAGAATTGTGTATTAACCCAAGGTTTTGCATGAGA
CGGAACTTCTTTTAACTTTGAGGGGATTAATGTGTTATTTTAAGCTCCGT
TTAAAGTGAGTCTGAATGTTATTTATCAAAGGTCATGGGAAGTTTTCTAA
ACAGTCTTCTTTGTCAAGAAGTTGGGAGTTTGAGCCCCCATCCCTGACGA
CGGGACCTACGTTTGTGGACTGAATTAATTTTCCTGAAACTGTACATAGA
AACGTGTAGTTTTCAACAATTCCAGACTGTTGTATAAAACTCCTGCATTC
TGAATAGGGTGTTTAAGTTTTTTCCCTAAACACTTCCATCAAAGATTTTG
TAGCGTGTCTTACTCAGTCTTATTTCCTTTGATTACTGAGAGAGTTTCAA
gtcttgaaaatttaaaatttgattaTTAGTAATAGtataggcgagaccaa
tttaatttgttgttctacgggcagatcgttagaaaaatatgggtcggtcg
gtaaaacaagaataaatttttcatttatcagggttggtaaggtaccgaaa
atattttccaaaaaatatctggatcaacaattcattatttttatgttcga
tgaagatcataataagattttagtgtatggaatgcttgattttctaaatt
tttcaattttttgaattcattttcagctttatcatattcaaattttattc
tATTGTACTGTAGTTGAAATtcaatatcattattttttttatttaagccA
AAATTAAGTACAGTAGCACAACAAATTGAATTGGTCTCGCGGTCTCGCCT
AATGTACATAGTAATATTAAGAGGTTTTTATTTACGCTCAATTTTTAACC
CACCTACAGCAAATTATTtacaacaatttttttattgagATTTTGACGGA
TTCATTTTATATATATTTGGATAGTGTACTTAAGGGTTATTTTATTTCAG
TATTGACGGTTTGAGCTTATTTATATTGACTTGACAAAGCGTCCAGAGTT
GCAGGTTTTTAGTTGAAATGGGACTTACATTTTCTCATTCAGTTTTGAGA
GCTTTTGCAAGTCCTTTCGTGATCACTTCGCCTACGGCGTTTATTGGATA
ATTTATACTGTAAGTTATTTCAACAGATTTTATTTGAGTTATATATTTAT
GATTTGATATTAAGAttaagtactctcgggtacttaatagccgggggggc
cccgctaattaatttttcgaaaattttccacccaggacattcttattcca
cccccccccccgcttattgatttttgggaattttttttttgaaagttctc
tctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052240-exon-scaffold_213-1491911889:423902..424000 | TCONS_00052240-exon-scaffold_213-1491911889:423902..424000 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1510915933:423902..424000 | TCONS_00052240-exon-scaffold_213-1510915933:423902..424000 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1575043694:423902..424000 | TCONS_00052240-exon-scaffold_213-1575043694:423902..424000 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1491911889:424343..424701 | TCONS_00052240-exon-scaffold_213-1491911889:424343..424701 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1510915933:424343..424701 | TCONS_00052240-exon-scaffold_213-1510915933:424343..424701 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1575043694:424343..424701 | TCONS_00052240-exon-scaffold_213-1575043694:424343..424701 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1491911889:426183..426392 | TCONS_00052240-exon-scaffold_213-1491911889:426183..426392 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1510915933:426183..426392 | TCONS_00052240-exon-scaffold_213-1510915933:426183..426392 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1575043694:426183..426392 | TCONS_00052240-exon-scaffold_213-1575043694:426183..426392 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1491911889:427075..427281 | TCONS_00052240-exon-scaffold_213-1491911889:427075..427281 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1510915933:427075..427281 | TCONS_00052240-exon-scaffold_213-1510915933:427075..427281 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1575043694:427075..427281 | TCONS_00052240-exon-scaffold_213-1575043694:427075..427281 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1491911889:427921..429857 | TCONS_00052240-exon-scaffold_213-1491911889:427921..429857 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1510915933:427921..429857 | TCONS_00052240-exon-scaffold_213-1510915933:427921..429857 | Clytia hemisphaerica | exon |
| TCONS_00052240-exon-scaffold_213-1575043694:427921..429857 | TCONS_00052240-exon-scaffold_213-1575043694:427921..429857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:423902..429857 + |
Blast
BLAST of TCONS_00052240 vs. Swiss-Prot (Human)
Match: PRS48 (Serine protease 48 OS=Homo sapiens GN=PRSS48 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.928e-33 Identity = 89/261 (34.10%), Postives = 130/261 (49.81%), Query Frame = 2
Query: 464 CSEKKRSRRVVSGADVRHGDWPWMAGLTLDKKFRCGGVLVNELHVLTSAHCLYRRGEKLDSNQIQIFLGSVHRSEEKLEPSKVRLAVKDLIIHKQFDPKTLENDIALVKLTDDVTFSKSIQPVCLP---KYSADAP-GYMLGWGKFK--PDGPLSPKLQQVKMPLVTNQQCQKQNNKIFRRV----KVHSENHICIGHGAQSPEYACAGDSGSGFFQQKKGMWFLQGLVSWIDPSCNSTLHNTYTVLTNVAKYENWIGENI 1216
C + S RVV G D G WPW L D F CGG LV+E +LT+AHC+ + ++LGS+ + + +V+ V ++IH ++ T D+AL+KL+ VTF+ +I P+CLP K A P ++ GWGK K D LQ+ ++P++ Q C++ N I + V E+ IC G Q+ + +C GDSG G+W G+VSW C +L Y TNV Y+ WI I
Sbjct: 19 CGQPVYSSRVVGGQDAAAGRWPWQVSLHFDHNFICGGSLVSERLILTAAHCIQ---PTWTTFSYTVWLGSITVGDSR---KRVKYYVSKIVIHPKYQDTT--ADVALLKLSSQVTFTSAILPICLPSVTKQLAIPPFCWVTGWGKVKESSDRDYHSALQEAEVPIIDRQACEQLYNPIGIFLPALEPVIKEDKICAGD-TQNMKDSCKGDSGGPLSCHIDGVWIQTGVVSW-GLECGKSLPGVY---TNVIYYQKWINATI 266
The following BLAST results are available for this feature:
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