TCONS_00052238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052238
Unique NameTCONS_00052238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052238 ID=TCONS_00052238|Name=TCONS_00052238|organism=Clytia hemisphaerica|type=transcript|length=2850bp
caaaaagcttcaaaataacATCTGCTTGAAGTTGAAAATCTTTTCACTTT
GCTCTAGCTTCAATAAATGTTCTTTCTCTTCTACTTTTTTGGTAGAGATC
AAAAACAGAGCAAGAAGAACGGTTATAGAAAAAGATAAAGCATGGCTACA
ACAGATAACTTTGAAGGTATTGATCCGGCCTTAATCCGTCAAGAACAAGC
TTTAGAAGAATACGGTTTAATCGATCGAGTTCGGCTGTCTGAACCTTTGT
CGGGAGAAGATCCGAGTACCGCGACAAAAAGTAACAATTTCTTCTATACT
TACTCCTTAAAAGGAGATGGACGACGAACAACCATCGTATGTGTGATCTT
TGTTCTTCTGTTTGTGGGTTGGACTGGTTACACTTTGTGTGAAGTCATCC
TCCAACCTGCTGAGAATGGAAAGAAAACAGCAGAACAACATCATGATCAT
ATTAGCAAATATTCTCATCCAGTTTGCGGCAAAATACAATGTGCAGGCGA
TTGTTCAGAAAAGAAGCGTTCTCGTCGTGTGGTTAGCGGCGCCGATGTTC
GACACGGGGACTGGCCCTGGATGGCCGGCCTCACATTGGATAAGAAGTTT
CGGTGTGGAGGAGTTCTTGTCAATGAGTTGCATGTGCTGACGTCAGCTCA
TTGTCTCTACCGAAGAGGAGAGAAATTGGACTCGAATCAAATTCAAATAT
TCCTCGGGAGTGTCCATCGCTCAGAAGAAAAACTCGAACCATCGAAAGTA
AGGCTTGCAGTAAAAGATTTGATCATACACAAACAGTTTGATCCAAAAAC
TTTGGAAAATGATATTGCACTGGTGAAATTAACAGATGATGTGACTTTCT
CAAAGTCTATCCAGCCTGTTTGTTTACCAAAATATTCTGCTGATGCACCC
GGTTACATGCTGGGTTGGGGTAAGTTCAAACCAGACGGTCCTCTTTCACC
AAAGCTTCAACAAGTGAAAATGCCACTGGTCACCAATCAACAATGTCAAA
AGCagaacaacaaaattttcaggCGAGTCAAGGTTCACTCAGAAAATCAC
ATTTGCATTGGTCATGGTGCGCAAAGTCCTGAATACGCATGTGCAGGAGA
TAGTGGGAGTGGTTTCTTTCAACAGAAAAAAGGGATGTGGTTTCTACAAG
GCTTGGTTTCCTGGATTGATCCCTCTTGCAATTCAACCCTTCACAATACT
TACACCGTGTTAACAAATGTTGCTAAATACGAAAATTGGATAGGTGAAAA
CATACACCTTTAAGAAATATTTCATGGCCTGGCTtcaaaactgtaaaaaa
atttagagtaagtaagtaagtaatgaATTTATTTGTCATAATAAGCTAGA
CGAGCGACCACATCAACTAAGGAGGCTGCATGCTACTGTTGCAAGAAAAA
ATAGCccgggggtactacccttgctgactgacgggggtgctccgctgagg
tttgaaaaatggacctagttgggactcgttttttcaaaaattttgccgaa
attttcagtgaccctgaatgggactgaaattccaaaattttttcaaatat
tacctACGAGAGAATTGTGTATTAACCCAAGGTTTTGCATGAGACGGAAC
TTCTTTTAACTTTGAGGGGATTAATGTGTTATTTTAAGCTCCGTTTAAAG
TGAGTCTGAATGTTATTTATCAAAGGTCATGGGAAGTTTTCTAAACAGTC
TTCTTTGTCAAGAAGTTGGGAGTTTGAGCCCCCATCCCTGACGACGGGAC
CTACGTTTGTGGACTGAATTAATTTTCCTGAAACTGTACATAGAAACGTG
TAGTTTTCAACAATTCCAGACTGTTGTATAAAACTCCTGCATTCTGAATA
GGGTGTTTAAGTTTTTTCCCTAAACACTTCCATCAAAGATTTTGTAGCGT
GTCTTACTCAGTCTTATTTCCTTTGATTACTGAGAGAGTTTCAAgtcttg
aaaatttaaaatttgattaTTAGTAATAGtataggcgagaccaatttaat
ttgttgttctacgggcagatcgttagaaaaatatgggtcggtcggtaaaa
caagaataaatttttcatttatcagggttggtaaggtaccgaaaatattt
tccaaaaaatatctggatcaacaattcattatttttatgttcgatgaaga
tcataataagattttagtgtatggaatgcttgattttctaaatttttcaa
ttttttgaattcattttcagctttatcatattcaaattttattctATTGT
ACTGTAGTTGAAATtcaatatcattattttttttatttaagccAAAATTA
AGTACAGTAGCACAACAAATTGAATTGGTCTCGCGGTCTCGCCTAATGTA
CATAGTAATATTAAGAGGTTTTTATTTACGCTCAATTTTTAACCCACCTA
CAGCAAATTATTtacaacaatttttttattgagATTTTGACGGATTCATT
TTATATATATTTGGATAGTGTACTTAAGGGTTATTTTATTTCAGTATTGA
CGGTTTGAGCTTATTTATATTGACTTGACAAAGCGTCCAGAGTTGCAGGT
TTTTAGTTGAAATGGGACTTACATTTTCTCATTCAGTTTTGAGAGCTTTT
GCAAGTCCTTTCGTGATCACTTCGCCTACGGCGTTTATTGGATAATTTAT
ACTGTAAGTTATTTCAACAGATTTTATTTGAGTTATATATTTATGATTTG
ATATTAAGAttaagtactctcgggtacttaatagccgggggggccccgct
aattaatttttcgaaaattttccacccaggacattcttattccacccccc
cccccgcttattgatttttgggaattttttttttgaaagttctctctttt
Run BLAST on NCBI

protein sequence of TCONS_00052238-protein

>TCONS_00052238-protein ID=TCONS_00052238-protein|Name=TCONS_00052238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MATTDNFEGIDPALIRQEQALEEYGLIDRVRLSEPLSGEDPSTATKSNNF
FYTYSLKGDGRRTTIVCVIFVLLFVGWTGYTLCEVILQPAENGKKTAEQH
HDHISKYSHPVCGKIQCAGDCSEKKRSRRVVSGADVRHGDWPWMAGLTLD
KKFRCGGVLVNELHVLTSAHCLYRRGEKLDSNQIQIFLGSVHRSEEKLEP
SKVRLAVKDLIIHKQFDPKTLENDIALVKLTDDVTFSKSIQPVCLPKYSA
DAPGYMLGWGKFKPDGPLSPKLQQVKMPLVTNQQCQKQNNKIFRRVKVHS
ENHICIGHGAQSPEYACAGDSGSGFFQQKKGMWFLQGLVSWIDPSCNSTL
HNTYTVLTNVAKYENWIGENIHL
Run BLAST on NCBI

transcript from alignment at scaffold_213:422499..429857+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052238 ID=TCONS_00052238|Name=TCONS_00052238|organism=Clytia hemisphaerica|type=transcript|length=7359bp|location=Sequence derived from alignment at scaffold_213:422499..429857+ (Clytia hemisphaerica)
caaaaagcttcaaaataacATCTGCTTGAAGTTGAAAATCTTTTCACTTT
GCTCTAGCTTCAATAAATGTTCTTTCTCTTCTACTTTTTTGGTAGAGATC
AAAAACAGAGCAAGAAGAACGGTTATAGAAAAAGATAAAGGTATaaagtt
ttcatatttttggctttttttatttgaaagtggTTATTGGCAGCGCTTCT
TGTAAAAAACAGAACATCACCCAAAATACGACAATGATTTATTTGTCATT
TCAAAGATCGCGCACATGTGTCTATTTTGCTGATGCTCTCTTTTTCAAAT
AGATTTTTAAGCAGTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAA
AgggtataaaaacaaaaagcttcaaaataacATCTGCTTGAAGTTGAAAA
TCTTTTCACTTTGCTCTAGCTTCAATAAATGTTCTTTCTCTTCTACTTTT
TTGGTAGAGATCAAAAACAGAGCAAGAAGAACGGTTATAGAAAAAGATAA
AGGTATaaagttttcatatttttggctttttttatttgaaagtggTTATT
GGCAGCGCTTCTTGTAAAAAACAGAACATCACCCAAAATACGACAATGAT
TTATTTGTCATTTCAAAGATCGCGCACATGTGTCTATTTTGCTGATGCTC
TCTTTTTCAAATAGATTTTTAAGCAGTCTAATAAACAATTTGATCACGGG
AAATTTGCATTTATTTAGATTCatccaaattttcaataagttgAACTATA
ATTATGCTTTGGCATTTTGggatttcattttaatttaaaaatgttGTCAT
TTTACTCGTTgtttatttaataatttttttttattttgttccaGCAGCAT
GGCTACAACAGATAACTTTGAAGGTATTGATCCGGCCTTAATCCGTCAAG
AACAAGCTTTAGAAGAATACGGTTTAATCGATCGAGTTCGGCTGTCTGAA
CCTTTGTCGGGAGAAGATCCGAGTACCGCGACAAAAAGTAACAATTTCTT
CTATACTTACTCCTTAAAAGGAGATGGACGACGAACAACCATCGTATGTG
TGATCTTTGTTCTTCTGTTTGTGGGTTGGACTGGTTACACTTTGTGTGAA
GTCATCCTCCAACCTGCTGAGAATGGAAAGAAAACAGCAGAACAACATCA
TGATCATATTAGCAAATATTCTCATCCAGTTTGCGGCAAAATACAATGTG
CAGGTATTGTGGTAttattgttttctatttttctcttATGTAGGGCCTAT
GTAGTGCGTCTGAAAGAAAGTGGAACaaattgaatttaaagaaaaagcct
caaaatgttaaCCTCCATATAACGAGATCTTTGCATTGTCGATAAGTTTC
ATTGGCCTTTATAAATACAAAACTTATGAGGGCTTTTccatattcaaaat
ctgatttttGTGACAACATTGTATTATTCAGCGTTTTGTTACTAGTAGGG
GGTTCGGAGCAttgatttataaagcccgaagtgctagatatcgtgcttta
agccatcgcaagCAAAAAAAACGAATATCGGAGGATTTCCTACTTAACCA
CGACACACTTTTCAGccgaagcacgacatctagcccttcggagtAGCTGG
TATGTGTGAATAGATTTTCTTCTGaaataaaaacgaaaatgataaaaaat
atgggTTAGAAAAAGGGTGAAAAGGCAACTCTTTTTTTAATGCACACTAA
CTCGACCAGCAATAAGACATAAATAAAGTTGGAATTTACCCCTTGTTTTT
GTTCGTTCATAATGAGGATTGATAATCCACATTGTGGGTAAGAAAATACT
TTCTATTAGACTACCTACGTGCGTATCTTATTGTTTTGAGGTATATTATG
ATATTAATTATCACCTGCGTCTTTTCAGTgctaaattattattttatatt
ttaccaaCTGCCTTTTAGGGGACCGCACCCTCttttattagcgagtttat
atattcgagataaatcgagggggacagtataaagcaaagttgacatgtct
ccaaaatcaccgtccactttgctcgacgacggtaaaaacaccaaaataac
gtcgtctgtttaggtgagcaaaggcgatatagagccgtacatcaactatc
gtttttgttttgtatcatttcacttacTGTCGCCCtagatatcctccgat
acataaactcggtattatctTTACTGGtgccaaaaaacaatttttatttt
tccggaaCTATCGATCGTTTTTATGTGACCGAAAAAGTTTATCAATCGCA
CCTCTTTCGTCCCaaagtttttaaagatttcaaGAGCGTGTTTTGGCAAC
TAAGTATTAGTCAGCGAAGGGAGGAACTTTTGCATCAAAACAAGAATTTG
AAGATATATAAACAGTTCCTGTGAATTCTTTCAGAAATTGTTTCATAACT
AGGCTCATAAAATGATCTTACTAGATTATTTGTACTCCATCGGTGAATAC
TTTGgcgtgtttttctttttcaaacattttgtcGTTTGGACCCTCTAGCT
TTGGGAAGAGTTTTCACAAATGTTACAATTAATATTCTCAATAGTATTTA
GAAAACAGTATGATTGGGTTCAGTATACTTAGCTGTGTAAGTTttattat
gtttaaaaaaattgcaagaacAATGAGATCAACCGATAGAAAACGTACTG
TTTCGCCATTATAAGCTTTCTTTCCTTCCAATAGGCGATTGTTCAGAAAA
GAAGCGTTCTCGTCGTGTGGTTAGCGGCGCCGATGTTCGACACGGGGACT
GGCCCTGGATGGCCGGCCTCACATTGGATAAGAAGTTTCGGTGTGGAGGA
GTTCTTGTCAATGAGTTGCATGTGCTGACGTCAGCTCATTGTCTCTACCG
AAGAGGAGAGAAATTGGACTCGAATCAAATTCAAATATTCCTCGGTAttg
tttttcaatcaaataCTTCTTTTGCTCTTATTTCACTACTACTCCATTat
atttgaaaatctttctgCATGGCAAAGTACCAATGCAAGAAACGAACAGT
GCGCAGCGATTGAAATactattcaaaaactttatgCGAGCccactttttt
tcttcagaaataattaaatattttaagaacTTGAGGCTCGATTCTCGTAA
GTTTTGACACAGTTACGTAAGCTAAATAAGACTCTCATAAGTTTCAAAGC
ATATACTGATTTTCGGTTTTCGGTTGACATAAGGCCATTTTATCTTGAAA
ATCTTATGCGAATACGTATTATTACAGAAAATCTTATACAAATGCCTTTG
TTACAGTGTTCCAAGGTTcaagtttctttcttttcaaacgGATTTTCATC
TTTCCATGTTAAATAATATTTGTTTCAAATTTACTTCAGCgaaattcaat
caaatataTTGAATCTTAGCTAAATAATTTCCTTTGTGAAGAAAGCTTCG
CTTCGACCACAAACGAGGTATAANccactagatcaaaagttaaggggtgg
tacaggatcAGCccctgaaccgcccctaaaagcataggttgaatagggtt
ataAGATAAGGTAGTTTCTTTTTTCACTCGGTTGTATGTTATTATGAAAA
TCCAACTTTTCCATTTGAAACTTTAGGGAGTGTCCATCGCTCAGAAGAAA
AACTCGAACCATCGAAAGTAAGGCTTGCAGTAAAAGATTTGATCATACAC
AAACAGTTTGATCCAAAAACTTTGGAAAATGATATTGCACTGGTGAAATT
AACAGATGATGTGACTTTCTCAAAGTCTATCCAGCCTGTTTGTTTACCAA
AATATTCTGCTGATGCACCCGGTTACATGCTGGGTAAGGCTTATATccaa
atgttttaattttttttatcaatgggctcttccagaaaaaaaaccattAT
AGGGGATGGAAGATATTTTGTCTAGGGGTATCgaaaaaatcccgaaaaac
TGTCATGTCCATAAGGTGAATTTGTAATGTCCAGGGGTGAATTTTAGTGA
CCAGGGGGTCGAATTGATGTTTGCTCAGGGGTAAAACGCGTGTCCAGgag
gtgaaaaattgaaacgtCCAGGGGCAGATCATTAAAAAAATAGTATACCT
TCCAcccccatgaacgaattttttctggatGAGCCCAATCAAAAGACTTC
TACAAGCATCGATCAATTACTTGTTCGATACCTTGACATTAACAAAATTG
TAAGATGATCCCTTACTACCTCCCGCATAAAACTcaatatacccctgtct
cgctGAGTGCTTGGCATCTAGATTTCAAAAGTGGTTGCTAAGAAGACATT
CCACTATTTTCTAATTTGATTCACCAGATTCAACTCTGGACGACTTCACT
ATCATTGCCAGAAAATTTTTCCATCGTGGCGATTTGTTCCCATTAAACCT
TGCTATGACATTGGTTTTTTAAAAGCGGTTATTATTGAAGAAAACGTACG
ttatacatatatttttcaacaGGTTGGGGTAAGTTCAAACCAGACGGTCC
TCTTTCACCAAAGCTTCAACAAGTGAAAATGCCACTGGTCACCAATCAAC
AATGTCAAAAGCagaacaacaaaattttcaggCGAGTCAAGGTTCACTCA
GAAAATCACATTTGCATTGGTCATGGTGCGCAAAGTCCTGAATACGCATG
TGCAGGAGATAGTGGGAGTGGTTTCTTTCAACAGAAAAAAGGGATGTGGT
TTCTACAAGGCTTGGTTTCCTGGATTGATCCCTCTTGCAATTCAACCCTT
CACAATACTTACACCGTGTTAACAAATGTTGCTAAATACGAAAATTGGAT
AGGTGAAAACATACACCTTTAAGAAATATTTCATGGCCTGGCTtcaaaac
tgtaaaaaaatttagagtaagtaagtaagtaatgaATTTATTTGTCATAA
TAAGCTAGACGAGCGACCACATCAACTAAGGAGGCTGCATGCTACTGTTG
CAAGAAAAAATAGCccgggggtactacccttgctgactgacgggggtgct
ccgctgaggtttgaaaaatggacctagttgggactcgttttttcaaaaat
tttgccgaaattttcagtgaccctgaatgggactgaaattccaaaatttt
ttcaaatattacctACGAGAGAATTGTGTATTAACCCAAGGTTTTGCATG
AGACGGAACTTCTTTTAACTTTGAGGGGATTAATGTGTTATTTTAAGCTC
CGTTTAAAGTGAGTCTGAATGTTATTTATCAAAGGTCATGGGAAGTTTTC
TAAACAGTCTTCTTTGTCAAGAAGTTGGGAGTTTGAGCCCCCATCCCTGA
CGACGGGACCTACGTTTGTGGACTGAATTAATTTTCCTGAAACTGTACAT
AGAAACGTGTAGTTTTCAACAATTCCAGACTGTTGTATAAAACTCCTGCA
TTCTGAATAGGGTGTTTAAGTTTTTTCCCTAAACACTTCCATCAAAGATT
TTGTAGCGTGTCTTACTCAGTCTTATTTCCTTTGATTACTGAGAGAGTTT
CAAgtcttgaaaatttaaaatttgattaTTAGTAATAGtataggcgagac
caatttaatttgttgttctacgggcagatcgttagaaaaatatgggtcgg
tcggtaaaacaagaataaatttttcatttatcagggttggtaaggtaccg
aaaatattttccaaaaaatatctggatcaacaattcattatttttatgtt
cgatgaagatcataataagattttagtgtatggaatgcttgattttctaa
atttttcaattttttgaattcattttcagctttatcatattcaaatttta
ttctATTGTACTGTAGTTGAAATtcaatatcattattttttttatttaag
ccAAAATTAAGTACAGTAGCACAACAAATTGAATTGGTCTCGCGGTCTCG
CCTAATGTACATAGTAATATTAAGAGGTTTTTATTTACGCTCAATTTTTA
ACCCACCTACAGCAAATTATTtacaacaatttttttattgagATTTTGAC
GGATTCATTTTATATATATTTGGATAGTGTACTTAAGGGTTATTTTATTT
CAGTATTGACGGTTTGAGCTTATTTATATTGACTTGACAAAGCGTCCAGA
GTTGCAGGTTTTTAGTTGAAATGGGACTTACATTTTCTCATTCAGTTTTG
AGAGCTTTTGCAAGTCCTTTCGTGATCACTTCGCCTACGGCGTTTATTGG
ATAATTTATACTGTAAGTTATTTCAACAGATTTTATTTGAGTTATATATT
TATGATTTGATATTAAGAttaagtactctcgggtacttaatagccggggg
ggccccgctaattaatttttcgaaaattttccacccaggacattcttatt
ccacccccccccccgcttattgatttttgggaattttttttttgaaagtt
ctctctttt

Coding sequence (CDS) from alignment at scaffold_213:422499..429857+

>TCONS_00052238 ID=TCONS_00052238|Name=TCONS_00052238|organism=Clytia hemisphaerica|type=CDS|length=4488bp|location=Sequence derived from alignment at scaffold_213:422499..429857+ (Clytia hemisphaerica)
ATGGCTACAACAGATAACTTTGAAGGTATTGATCCGGCCTTAATCCGTCA
AGAACAAGCTTTAGAAGAATACGGTTTAATCGATCGAGTTCGGCTGTCTG
AACCTTTGTCGGGAGAAGATCCGAGTACCGCGACAAAAAGTAACAATTTC
TTCTATACTTACTCCTTAAAAGGAGATGGACGACGAACAACCATCGTATG
TGTGATCTTTGTTCTTCTGTTTGTGGGTTGGACTGGTTACACTTTGTGTG
AAGTCATCCTCCAACCTGCTGAGAATGGAAAGAAAACAGCAGAACAACAT
CATGATCATATTAGCAAATATTCTCATCCAGTTTGCGGCAAAATACAATG
TGCAGGCGATTGTTCAGAAAAGAAGCGTTCTCGTCGTGTGGTTAGCGGCG
CCGATGTTCGACACGGGGACTGGCCCTGGATGGCCGGCCTCACATTGGAT
AAGAAGTTTCGGTGTGGAGGAGTTCTTGTCAATGAGTTGCATGTGCTGAC
GTCAGCTCATTGTCTCTACCGAAGAGGAGAGAAATTGGACTCGAATCAAA
TTCAAATATTCCTCGGGAGTGTCCATCGCTCAGAAGAAAAACTCGAACCA
TCGAAAGTAAGGCTTGCAGTAAAAGATTTGATCATACACAAACAGTTTGA
TCCAAAAACTTTGGAAAATGATATTGCACTGGTGAAATTAACAGATGATG
TGACTTTCTCAAAGTCTATCCAGCCTGTTTGTTTACCAAAATATTCTGCT
GATGCACCCGGTTACATGCTGGGTTGGGGTAAGTTCAAACCAGACGGTCC
TCTTTCACCAAAGCTTCAACAAGTGAAAATGCCACTGGTCACCAATCAAC
AATGTCAAAAGCagaacaacaaaattttcaggCGAGTCAAGGTTCACTCA
GAAAATCACATTTGCATTGGTCATGGTGCGCAAAGTCCTGAATACGCATG
TGCAGGAGATAGTGGGAGTGGTTTCTTTCAACAGAAAAAAGGGATGTGGT
TTCTACAAGGCTTGGTTTCCTGGATTGATCCCTCTTGCAATTCAACCCTT
CACAATACTTACACCGTGTTAACAAATGTTGCTAAATACGAAAATTGGAT
AGGTGAAAACATACACCTTTAAATGGCTACAACAGATAACTTTGAAGGTA
TTGATCCGGCCTTAATCCGTCAAGAACAAGCTTTAGAAGAATACGGTTTA
ATCGATCGAGTTCGGCTGTCTGAACCTTTGTCGGGAGAAGATCCGAGTAC
CGCGACAAAAAGTAACAATTTCTTCTATACTTACTCCTTAAAAGGAGATG
GACGACGAACAACCATCGTATGTGTGATCTTTGTTCTTCTGTTTGTGGGT
TGGACTGGTTACACTTTGTGTGAAGTCATCCTCCAACCTGCTGAGAATGG
AAAGAAAACAGCAGAACAACATCATGATCATATTAGCAAATATTCTCATC
CAGTTTGCGGCAAAATACAATGTGCAGGCGATTGTTCAGAAAAGAAGCGT
TCTCGTCGTGTGGTTAGCGGCGCCGATGTTCGACACGGGGACTGGCCCTG
GATGGCCGGCCTCACATTGGATAAGAAGTTTCGGTGTGGAGGAGTTCTTG
TCAATGAGTTGCATGTGCTGACGTCAGCTCATTGTCTCTACCGAAGAGGA
GAGAAATTGGACTCGAATCAAATTCAAATATTCCTCGGGAGTGTCCATCG
CTCAGAAGAAAAACTCGAACCATCGAAAGTAAGGCTTGCAGTAAAAGATT
TGATCATACACAAACAGTTTGATCCAAAAACTTTGGAAAATGATATTGCA
CTGGTGAAATTAACAGATGATGTGACTTTCTCAAAGTCTATCCAGCCTGT
TTGTTTACCAAAATATTCTGCTGATGCACCCGGTTACATGCTGGGTTGGG
GTAAGTTCAAACCAGACGGTCCTCTTTCACCAAAGCTTCAACAAGTGAAA
ATGCCACTGGTCACCAATCAACAATGTCAAAAGCagaacaacaaaatttt
caggCGAGTCAAGGTTCACTCAGAAAATCACATTTGCATTGGTCATGGTG
CGCAAAGTCCTGAATACGCATGTGCAGGAGATAGTGGGAGTGGTTTCTTT
CAACAGAAAAAAGGGATGTGGTTTCTACAAGGCTTGGTTTCCTGGATTGA
TCCCTCTTGCAATTCAACCCTTCACAATACTTACACCGTGTTAACAAATG
TTGCTAAATACGAAAATTGGATAGGTGAAAACATACACCTTTAAATGGCT
ACAACAGATAACTTTGAAGGTATTGATCCGGCCTTAATCCGTCAAGAACA
AGCTTTAGAAGAATACGGTTTAATCGATCGAGTTCGGCTGTCTGAACCTT
TGTCGGGAGAAGATCCGAGTACCGCGACAAAAAGTAACAATTTCTTCTAT
ACTTACTCCTTAAAAGGAGATGGACGACGAACAACCATCGTATGTGTGAT
CTTTGTTCTTCTGTTTGTGGGTTGGACTGGTTACACTTTGTGTGAAGTCA
TCCTCCAACCTGCTGAGAATGGAAAGAAAACAGCAGAACAACATCATGAT
CATATTAGCAAATATTCTCATCCAGTTTGCGGCAAAATACAATGTGCAGG
CGATTGTTCAGAAAAGAAGCGTTCTCGTCGTGTGGTTAGCGGCGCCGATG
TTCGACACGGGGACTGGCCCTGGATGGCCGGCCTCACATTGGATAAGAAG
TTTCGGTGTGGAGGAGTTCTTGTCAATGAGTTGCATGTGCTGACGTCAGC
TCATTGTCTCTACCGAAGAGGAGAGAAATTGGACTCGAATCAAATTCAAA
TATTCCTCGGGAGTGTCCATCGCTCAGAAGAAAAACTCGAACCATCGAAA
GTAAGGCTTGCAGTAAAAGATTTGATCATACACAAACAGTTTGATCCAAA
AACTTTGGAAAATGATATTGCACTGGTGAAATTAACAGATGATGTGACTT
TCTCAAAGTCTATCCAGCCTGTTTGTTTACCAAAATATTCTGCTGATGCA
CCCGGTTACATGCTGGGTTGGGGTAAGTTCAAACCAGACGGTCCTCTTTC
ACCAAAGCTTCAACAAGTGAAAATGCCACTGGTCACCAATCAACAATGTC
AAAAGCagaacaacaaaattttcaggCGAGTCAAGGTTCACTCAGAAAAT
CACATTTGCATTGGTCATGGTGCGCAAAGTCCTGAATACGCATGTGCAGG
AGATAGTGGGAGTGGTTTCTTTCAACAGAAAAAAGGGATGTGGTTTCTAC
AAGGCTTGGTTTCCTGGATTGATCCCTCTTGCAATTCAACCCTTCACAAT
ACTTACACCGTGTTAACAAATGTTGCTAAATACGAAAATTGGATAGGTGA
AAACATACACCTTTAAATGGCTACAACAGATAACTTTGAAGGTATTGATC
CGGCCTTAATCCGTCAAGAACAAGCTTTAGAAGAATACGGTTTAATCGAT
CGAGTTCGGCTGTCTGAACCTTTGTCGGGAGAAGATCCGAGTACCGCGAC
AAAAAGTAACAATTTCTTCTATACTTACTCCTTAAAAGGAGATGGACGAC
GAACAACCATCGTATGTGTGATCTTTGTTCTTCTGTTTGTGGGTTGGACT
GGTTACACTTTGTGTGAAGTCATCCTCCAACCTGCTGAGAATGGAAAGAA
AACAGCAGAACAACATCATGATCATATTAGCAAATATTCTCATCCAGTTT
GCGGCAAAATACAATGTGCAGGCGATTGTTCAGAAAAGAAGCGTTCTCGT
CGTGTGGTTAGCGGCGCCGATGTTCGACACGGGGACTGGCCCTGGATGGC
CGGCCTCACATTGGATAAGAAGTTTCGGTGTGGAGGAGTTCTTGTCAATG
AGTTGCATGTGCTGACGTCAGCTCATTGTCTCTACCGAAGAGGAGAGAAA
TTGGACTCGAATCAAATTCAAATATTCCTCGGGAGTGTCCATCGCTCAGA
AGAAAAACTCGAACCATCGAAAGTAAGGCTTGCAGTAAAAGATTTGATCA
TACACAAACAGTTTGATCCAAAAACTTTGGAAAATGATATTGCACTGGTG
AAATTAACAGATGATGTGACTTTCTCAAAGTCTATCCAGCCTGTTTGTTT
ACCAAAATATTCTGCTGATGCACCCGGTTACATGCTGGGTTGGGGTAAGT
TCAAACCAGACGGTCCTCTTTCACCAAAGCTTCAACAAGTGAAAATGCCA
CTGGTCACCAATCAACAATGTCAAAAGCagaacaacaaaattttcaggCG
AGTCAAGGTTCACTCAGAAAATCACATTTGCATTGGTCATGGTGCGCAAA
GTCCTGAATACGCATGTGCAGGAGATAGTGGGAGTGGTTTCTTTCAACAG
AAAAAAGGGATGTGGTTTCTACAAGGCTTGGTTTCCTGGATTGATCCCTC
TTGCAATTCAACCCTTCACAATACTTACACCGTGTTAACAAATGTTGCTA
AATACGAAAATTGGATAGGTGAAAACATACACCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033061XLOC_033061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052238-exon-scaffold_213-1491911889:422499..422638TCONS_00052238-exon-scaffold_213-1491911889:422499..422638Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1510915933:422499..422638TCONS_00052238-exon-scaffold_213-1510915933:422499..422638Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1575043694:422499..422638TCONS_00052238-exon-scaffold_213-1575043694:422499..422638Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1491911889:424346..424701TCONS_00052238-exon-scaffold_213-1491911889:424346..424701Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1510915933:424346..424701TCONS_00052238-exon-scaffold_213-1510915933:424346..424701Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1575043694:424346..424701TCONS_00052238-exon-scaffold_213-1575043694:424346..424701Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1491911889:426183..426392TCONS_00052238-exon-scaffold_213-1491911889:426183..426392Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1510915933:426183..426392TCONS_00052238-exon-scaffold_213-1510915933:426183..426392Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1575043694:426183..426392TCONS_00052238-exon-scaffold_213-1575043694:426183..426392Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1491911889:427075..427281TCONS_00052238-exon-scaffold_213-1491911889:427075..427281Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1510915933:427075..427281TCONS_00052238-exon-scaffold_213-1510915933:427075..427281Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1575043694:427075..427281TCONS_00052238-exon-scaffold_213-1575043694:427075..427281Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1491911889:427921..429857TCONS_00052238-exon-scaffold_213-1491911889:427921..429857Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1510915933:427921..429857TCONS_00052238-exon-scaffold_213-1510915933:427921..429857Clytia hemisphaericaexon
TCONS_00052238-exon-scaffold_213-1575043694:427921..429857TCONS_00052238-exon-scaffold_213-1575043694:427921..429857Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052238-proteinTCONS_00052238-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:422499..429857 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.108553	0	0	0.885993	0.61619	11.7462	3.43802	2.86175	4.36978	6.42381	3.66816	0.561192	2.01525	0.440511	6.79017e-05	4.17931	3.28252	3.76997	1.71356	4.00886	0.00622286	0.882821	2.51633	0.0164718	4.44849	1.52948	1.44215	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00052238 vs. Swiss-Prot (Human)
Match: PRS48 (Serine protease 48 OS=Homo sapiens GN=PRSS48 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.002e-33
Identity = 89/261 (34.10%), Postives = 130/261 (49.81%), Query Frame = 1 
Query:  502 CSEKKRSRRVVSGADVRHGDWPWMAGLTLDKKFRCGGVLVNELHVLTSAHCLYRRGEKLDSNQIQIFLGSVHRSEEKLEPSKVRLAVKDLIIHKQFDPKTLENDIALVKLTDDVTFSKSIQPVCLP---KYSADAP-GYMLGWGKFK--PDGPLSPKLQQVKMPLVTNQQCQKQNNKIFRRV----KVHSENHICIGHGAQSPEYACAGDSGSGFFQQKKGMWFLQGLVSWIDPSCNSTLHNTYTVLTNVAKYENWIGENI 1254
            C +   S RVV G D   G WPW   L  D  F CGG LV+E  +LT+AHC+        +    ++LGS+   + +    +V+  V  ++IH ++   T   D+AL+KL+  VTF+ +I P+CLP   K  A  P  ++ GWGK K   D      LQ+ ++P++  Q C++  N I   +     V  E+ IC G   Q+ + +C GDSG        G+W   G+VSW    C  +L   Y   TNV  Y+ WI   I
Sbjct:   19 CGQPVYSSRVVGGQDAAAGRWPWQVSLHFDHNFICGGSLVSERLILTAAHCIQ---PTWTTFSYTVWLGSITVGDSR---KRVKYYVSKIVIHPKYQDTT--ADVALLKLSSQVTFTSAILPICLPSVTKQLAIPPFCWVTGWGKVKESSDRDYHSALQEAEVPIIDRQACEQLYNPIGIFLPALEPVIKEDKICAGD-TQNMKDSCKGDSGGPLSCHIDGVWIQTGVVSW-GLECGKSLPGVY---TNVIYYQKWINATI 266
The following BLAST results are available for this feature:
BLAST of TCONS_00052238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS482.002e-3334.10Serine protease 48 OS=Homo sapiens GN=PRSS48 PE=2 ... [more]
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