TCONS_00052201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052201
Unique NameTCONS_00052201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052201 ID=TCONS_00052201|Name=TCONS_00052201|organism=Clytia hemisphaerica|type=transcript|length=839bp
gctTGATATTCCACGAGCTCCTGGACTTGGCTTGTTGTTGGAGAGGGTTG
AGTACCAGCaatacaatgaaaaatatgGTAATGATGGCTTGCACAATCCG
CTGACCTGGCAGGATCTCGAGCTTGAAGTTGAAAGATTTAAGATTGAATG
TATTTGGCAATCAATAATGGAGGAGGAAATTAAAAAATCGCCCATGGTTA
TTTGGTTGAAAACTCTAGCAAACCATACGTACAGTACAGTTGGCATGAAC
CAACCTCAAGATACAGGATATAAAGGACAGAAAGGTGTTTTCCCCACCAA
TGTTCCAAATAGTAACAATAAAAGGGGCAGAGGAACTTATAGAGGACATA
AGCGACCCTGGGAGAGTGGACCCAGAGGTGGGGGTCGTGGCGGACGCGGT
GGACGTGGTGGTTGGAATAATAACAACAATAGGGGTGGTGCAAACAAGTG
ATTTGTTGGTTATTGTTTCAAATGGTGAAATTCTTCTCGTCAGCTACAAA
ACAAACAGAGCCGTGTGATTAATAAGCCGAAGATTAACAACATATCAGCC
AACTATCAAGGTTATTTGGCTAATCTTTAGTTACAAAATGGTCTAAATCG
AAATGagatgaaatgaaatgaaagaaaatggaTTGTTTTTTAATCTAGTC
ATcaatatttgatattttcgtCCAGTATCATTCATTTTTTAGTATCATAT
CATTTTTTGTATACTTATATGTTGTATGTTGAATTTTACCGCACCTTCTT
GATATACTACACGTTCGATGCTCTACAAGAGAAGATTCTTCAGTGATGac
gatttattttcttttgtaatGTATACATCAGTTCGCGAA
Run BLAST on NCBI

protein sequence of TCONS_00052201-protein

>TCONS_00052201-protein ID=TCONS_00052201-protein|Name=TCONS_00052201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
LDIPRAPGLGLLLERVEYQQYNEKYGNDGLHNPLTWQDLELEVERFKIEC
IWQSIMEEEIKKSPMVIWLKTLANHTYSTVGMNQPQDTGYKGQKGVFPTN
VPNSNNKRGRGTYRGHKRPWESGPRGGGRGGRGGRGGWNNNNNRGGANK
Run BLAST on NCBI

transcript from alignment at scaffold_213:2442..3883+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052201 ID=TCONS_00052201|Name=TCONS_00052201|organism=Clytia hemisphaerica|type=transcript|length=1442bp|location=Sequence derived from alignment at scaffold_213:2442..3883+ (Clytia hemisphaerica)
gctTGATATTCCACGAGCTCCTGGACTTGGCTTGTTGTTGGAGAGGGTAT
GTTGTACTTTTAATTGAAAGTTATATTCTTTTTGTGTTATTTGActtaaa
taaagttttttgaaagactTGAGAAAAAAGGCTAGGTAAATGATGTGACA
AATGACAAATTTTCTATGAACAAAATCGATTGTCAACAatgcaaaaactt
ttcattgaaCACAGACTATGTTTATCTTTAGACAATATACTTTTCGATAG
AAGGAACTCGCCTTGATGTCATCAGAAGCTGTTATGAACGACTACAAACT
TCGATAAATAAGTCCCCAGAGTATACAAGGTAAAACGTTTGATTTGTACC
CTTATGTATTAAGGAAAATATTTACGAATTTTCAGGTTGAGTACCAGCaa
tacaatgaaaaatatgGTAATGATGGCTTGCACAATCCGCTGACCTGGCA
GGATCTCGAGGTATTAGATTTTTTTGTGTCTATTCATGCTCTGTGACATT
TTCTGACTTTAATGTGGCAACCATATCAGCGTAATTTGAGTTATTTCGCA
TGGTAGAAAAAAAGATAGCACGCTTATTATACAAACTTTCTCAATACTAC
TGGTTGTTTTATTTGATaaacttggaaatatttttctggatAGCGCTTTC
TAAATTTACATTCAGAGCTTTTTACCATGAATTATTGTTTTTCATGTTAA
CAAAAACCATTCTTGTTTTTTAAGCTTGAAGTTGAAAGATTTAAGATTGA
ATGTATTTGGCAATCAATAATGGAGGAGGAAATTAAAAAATCGCCCATGG
TTATTTGGTTGAAAACTCTAGCAAACCATACGTACAGTACAGTTGGCATG
AACCAACCTCAAGATACAGGATATAAAGGACAGAAAGGTGTTTTCCCCAC
CAATGTTCCAAATAGTAACAATAAAAGGGGCAGAGGAACTTATAGAGGAC
ATAAGCGACCCTGGGAGAGTGGACCCAGAGGTGGGGGTCGTGGCGGACGC
GGTGGACGTGGTGGTTGGAATAATAACAACAATAGGGGTGGTGCAAACAA
GTGATTTGTTGGTTATTGTTTCAAATGGTGAAATTCTTCTCGTCAGCTAC
AAAACAAACAGAGCCGTGTGATTAATAAGCCGAAGATTAACAACATATCA
GCCAACTATCAAGGTTATTTGGCTAATCTTTAGTTACAAAATGGTCTAAA
TCGAAATGagatgaaatgaaatgaaagaaaatggaTTGTTTTTTAATCTA
GTCATcaatatttgatattttcgtCCAGTATCATTCATTTTTTAGTATCA
TATCATTTTTTGTATACTTATATGTTGTATGTTGAATTTTACCGCACCTT
CTTGATATACTACACGTTCGATGCTCTACAAGAGAAGATTCTTCAGTGAT
GacgatttattttcttttgtaatGTATACATCAGTTCGCGAA

Coding sequence (CDS) from alignment at scaffold_213:2442..3883+

>TCONS_00052201 ID=TCONS_00052201|Name=TCONS_00052201|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_213:2442..3883+ (Clytia hemisphaerica)
ctTGATATTCCACGAGCTCCTGGACTTGGCTTGTTGTTGGAGAGGGTTGA
GTACCAGCaatacaatgaaaaatatgGTAATGATGGCTTGCACAATCCGC
TGACCTGGCAGGATCTCGAGCTTGAAGTTGAAAGATTTAAGATTGAATGT
ATTTGGCAATCAATAATGGAGGAGGAAATTAAAAAATCGCCCATGGTTAT
TTGGTTGAAAACTCTAGCAAACCATACGTACAGTACAGTTGGCATGAACC
AACCTCAAGATACAGGATATAAAGGACAGAAAGGTGTTTTCCCCACCAAT
GTTCCAAATAGTAACAATAAAAGGGGCAGAGGAACTTATAGAGGACATAA
GCGACCCTGGGAGAGTGGACCCAGAGGTGGGGGTCGTGGCGGACGCGGTG
GACGTGGTGGTTGGAATAATAACAACAATAGGGGTGGTGCAAACAAGTGA
ctTGATATTCCACGAGCTCCTGGACTTGGCTTGTTGTTGGAGAGGGTTGA
GTACCAGCaatacaatgaaaaatatgGTAATGATGGCTTGCACAATCCGC
TGACCTGGCAGGATCTCGAGCTTGAAGTTGAAAGATTTAAGATTGAATGT
ATTTGGCAATCAATAATGGAGGAGGAAATTAAAAAATCGCCCATGGTTAT
TTGGTTGAAAACTCTAGCAAACCATACGTACAGTACAGTTGGCATGAACC
AACCTCAAGATACAGGATATAAAGGACAGAAAGGTGTTTTCCCCACCAAT
GTTCCAAATAGTAACAATAAAAGGGGCAGAGGAACTTATAGAGGACATAA
GCGACCCTGGGAGAGTGGACCCAGAGGTGGGGGTCGTGGCGGACGCGGTG
GACGTGGTGGTTGGAATAATAACAACAATAGGGGTGGTGCAAACAAGTGA
ctTGATATTCCACGAGCTCCTGGACTTGGCTTGTTGTTGGAGAGGGTTGA
GTACCAGCaatacaatgaaaaatatgGTAATGATGGCTTGCACAATCCGC
TGACCTGGCAGGATCTCGAGCTTGAAGTTGAAAGATTTAAGATTGAATGT
ATTTGGCAATCAATAATGGAGGAGGAAATTAAAAAATCGCCCATGGTTAT
TTGGTTGAAAACTCTAGCAAACCATACGTACAGTACAGTTGGCATGAACC
AACCTCAAGATACAGGATATAAAGGACAGAAAGGTGTTTTCCCCACCAAT
GTTCCAAATAGTAACAATAAAAGGGGCAGAGGAACTTATAGAGGACATAA
GCGACCCTGGGAGAGTGGACCCAGAGGTGGGGGTCGTGGCGGACGCGGTG
GACGTGGTGGTTGGAATAATAACAACAATAGGGGTGGTGCAAACAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033053XLOC_033053Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052201-proteinTCONS_00052201-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052201-exon-scaffold_213-1491911889:2442..2487TCONS_00052201-exon-scaffold_213-1491911889:2442..2487Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1510915933:2442..2487TCONS_00052201-exon-scaffold_213-1510915933:2442..2487Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1575043694:2442..2487TCONS_00052201-exon-scaffold_213-1575043694:2442..2487Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1491911889:2827..2901TCONS_00052201-exon-scaffold_213-1491911889:2827..2901Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1510915933:2827..2901TCONS_00052201-exon-scaffold_213-1510915933:2827..2901Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1575043694:2827..2901TCONS_00052201-exon-scaffold_213-1575043694:2827..2901Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1491911889:3166..3883TCONS_00052201-exon-scaffold_213-1491911889:3166..3883Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1510915933:3166..3883TCONS_00052201-exon-scaffold_213-1510915933:3166..3883Clytia hemisphaericaexon
TCONS_00052201-exon-scaffold_213-1575043694:3166..3883TCONS_00052201-exon-scaffold_213-1575043694:3166..3883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:2442..3883 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.3652	15.0757	7.5618	9.32908	6.6607	3.37881	10.5865	10.4061	8.57305	6.72961	7.3815	6.31377	7.63741	10.3735	8.47415	7.88378	10.1877	5.39249	2.82736	2.24177	6.76745	7.24941	15.906	11.0212	11.7384	13.3963	8.32208	6.9289	12.9186	14.9998
Blast
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BLAST of TCONS_00052201 vs. Swiss-Prot (Human)
Match: TRUA (tRNA pseudouridine synthase A, mitochondrial OS=Homo sapiens GN=PUS1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 3.077e-19
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:    2 LDIPRAPGLGLLLERVEYQQYNEKYGNDGLHNPLTWQDLELEVERFKIECIWQSIMEEEIKKSPMVIWLKTLANHTYSTVGMN 250
            +D+P+APGLGL+LERV +++YN+++GNDGLH PL W   E +V  FK E I+ +I+  E  +  M  WL TL  H +S   + 
Sbjct:  323 VDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALT 405
The following BLAST results are available for this feature:
BLAST of TCONS_00052201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRUA3.077e-1945.78tRNA pseudouridine synthase A, mitochondrial OS=Ho... [more]
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