TCONS_00052195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052195
Unique NameTCONS_00052195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052195 ID=TCONS_00052195|Name=TCONS_00052195|organism=Clytia hemisphaerica|type=transcript|length=280bp
CACCTTCCCTAGTTAGGGATTGGTTAGGGAAAAATGTAtatttccagatc
tggaaataTACATTTCCATAGCCTAgggaatcaaaaaaattttcctgtgt
ATGGTATGGAGTTGTTCAAGATGAATATGCTAGCTATGTAGAGGAAAAAA
ACTTATGTTGGTTTATGCTCATGTTActactaaattttaaattttctacc
TAATCGGTAAAAAATAAGTcggaaataaaattgaaaaaatggcttGGTAA
TTTCTATACCGAAGAATTTATATAACTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_212:44211..44490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052195 ID=TCONS_00052195|Name=TCONS_00052195|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_212:44211..44490 (Clytia hemisphaerica)
GTCAGTTATATAAATTCTTCGGTATAGAAATTACCaagccattttttcaa
ttttatttccgACTTATTTTTTACCGATTAggtagaaaatttaaaattta
gtagTAACATGAGCATAAACCAACATAAGTTTTTTTCCTCTACATAGCTA
GCATATTCATCTTGAACAACTCCATACCATacacaggaaaatttttttga
ttcccTAGGCTATGGAAATGTAtatttccagatctggaaataTACATTTT
TCCCTAACCAATCCCTAACTAGGGAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033047XLOC_033047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052195-exon-scaffold_212-1491911889:44211..44490TCONS_00052195-exon-scaffold_212-1491911889:44211..44490Clytia hemisphaericaexon
TCONS_00052195-exon-scaffold_212-1510915933:44211..44490TCONS_00052195-exon-scaffold_212-1510915933:44211..44490Clytia hemisphaericaexon
TCONS_00052195-exon-scaffold_212-1575043694:44211..44490TCONS_00052195-exon-scaffold_212-1575043694:44211..44490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:44211..44490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.964177	1.1195	1.64289	5.33348	2.63412	14.6186	5.95032	1.24979	3.09613	4.50777	3.29248	1.64395	1.70726	1.12288	0.301255	1.11336	0	0	0	1.91194	1.39887	0	0.515335	4.77705	7.10567	0	0.723451	0.548712	1.1181
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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