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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052193 ID=TCONS_00052193|Name=TCONS_00052193|organism=Clytia hemisphaerica|type=transcript|length=1003bp
TTGGATATAGAAAAGGAATGAGTACACAAACTCCACTTTTAGTCATGACT
GAAATTTGGAAGAAAGCtacagatgaaaagaaaaagtttgcagCGCTACT
CATTGACTTATCAAAAGCTTTCGACTGCATCTCGCACGAACTATTGATTG
CTAAACTTGAAGCGTACGGATTTTCAAGGAGTGCCTTAGGTCTCATAGCA
GCCTATCTATCAGATAGAAAGcaaagaacgaaaattggcgACCATTACAG
CACCTGGCATAATGTTAAAGTAGGTGTTCCCCAAGTATCCATTCTAGGGC
CACTACTATTTAACATCTACATGAGAGATTTGTTCTACtttcttgaaaat
agaaatgtactgAATTATGCAGACGATACAACACCTTTTGTGATAGCTGA
TTCTTGCGAACAGGTTGGCGAGGAGCTCTCGAATGGAGCTGCTATCATCT
TTGAGTGGATAacccaaaatcaaatgaaaggaaATGCAGACAAGTCTGAG
TTGATAGCTAACAATACCAGCAAAGAAATCTTCATTACTATACAGAATGA
ACGCATCTTTAACAGCAACTCAGGCAAGATCCTAGGATTAACTTTTGACA
ACTGTCTGACTTTTGAGCCACATATTAACACGATTTATAAGAAAGCTAGC
CAGAAAATCAGTGCACTTGCGAGGGTAGCACCGTACaagaatcaaaagaa
aaagcaaaggcTCATGAATGCCTTCTTTCGAAGTCAATTCAATTATTGTT
CGCTTGTCTGGATGTTTCATGTTCGCAGGCtagatcaaaaaataaatcac
ctccacgaaagatgtttgAGGATAGTGTATTCTGATCATACATCTACTTT
TGAGCAGCTTTTAGAGAAAGACGGTGCCATCAAATTCCCCCATAAAAATC
TTCAGTTGTTAGCAATAGAACTTTTCCAATGTAAAAATAACATATCAGAT
CtaactaaagaaattttcaaacatgatgaaaatatcaaagtaaatcGCAA
AAC Run BLAST on NCBI protein sequence of TCONS_00052193-protein >TCONS_00052193-protein ID=TCONS_00052193-protein|Name=TCONS_00052193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
GYRKGMSTQTPLLVMTEIWKKATDEKKKFAALLIDLSKAFDCISHELLIA
KLEAYGFSRSALGLIAAYLSDRKQRTKIGDHYSTWHNVKVGVPQVSILGP
LLFNIYMRDLFYFLENRNVLNYADDTTPFVIADSCEQVGEELSNGAAIIF
EWITQNQMKGNADKSELIANNTSKEIFITIQNERIFNSNSGKILGLTFDN
CLTFEPHINTIYKKASQKISALARVAPYKNQKKKQRLMNAFFRSQFNYCS
LVWMFHVRRLDQKINHLHERCLRIVYSDHTSTFEQLLEKDGAIKFPHKNL
QLLAIELFQCKNNISDLTKEIFKHDENIKVNRK Run BLAST on NCBI transcript from alignment at scaffold_212:17349..18351 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052193 ID=TCONS_00052193|Name=TCONS_00052193|organism=Clytia hemisphaerica|type=transcript|length=1003bp|location=Sequence derived from alignment at scaffold_212:17349..18351 (Clytia hemisphaerica)
GTTTTGCgatttactttgatattttcatcatgtttgaaaatttctttagt
taGATCTGATATGTTATTTTTACATTGGAAAAGTTCTATTGCTAACAACT
GAAGATTTTTATGGGGGAATTTGATGGCACCGTCTTTCTCTAAAAGCTGC
TCAAAAGTAGATGTATGATCAGAATACACTATCCTcaaacatctttcgtg
gaggtgatttattttttgatctaGCCTGCGAACATGAAACATCCAGACAA
GCGAACAATAATTGAATTGACTTCGAAAGAAGGCATTCATGAgcctttgc
tttttcttttgattcttGTACGGTGCTACCCTCGCAAGTGCACTGATTTT
CTGGCTAGCTTTCTTATAAATCGTGTTAATATGTGGCTCAAAAGTCAGAC
AGTTGTCAAAAGTTAATCCTAGGATCTTGCCTGAGTTGCTGTTAAAGATG
CGTTCATTCTGTATAGTAATGAAGATTTCTTTGCTGGTATTGTTAGCTAT
CAACTCAGACTTGTCTGCATttcctttcatttgattttgggtTATCCACT
CAAAGATGATAGCAGCTCCATTCGAGAGCTCCTCGCCAACCTGTTCGCAA
GAATCAGCTATCACAAAAGGTGTTGTATCGTCTGCATAATTcagtacatt
tctattttcaagaaaGTAGAACAAATCTCTCATGTAGATGTTAAATAGTA
GTGGCCCTAGAATGGATACTTGGGGAACACCTACTTTAACATTATGCCAG
GTGCTGTAATGGTcgccaattttcgttctttgCTTTCTATCTGATAGATA
GGCTGCTATGAGACCTAAGGCACTCCTTGAAAATCCGTACGCTTCAAGTT
TAGCAATCAATAGTTCGTGCGAGATGCAGTCGAAAGCTTTTGATAAGTCA
ATGAGTAGCGctgcaaactttttcttttcatctgtaGCTTTCTTCCAAAT
TTCAGTCATGACTAAAAGTGGAGTTTGTGTACTCATTCCTTTTCTATATC
CAA Coding sequence (CDS) from alignment at scaffold_212:17349..18351 >TCONS_00052193 ID=TCONS_00052193|Name=TCONS_00052193|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_212:17349..18351 (Clytia hemisphaerica)
TTTGCgatttactttgatattttcatcatgtttgaaaatttctttagtta
GATCTGATATGTTATTTTTACATTGGAAAAGTTCTATTGCTAACAACTGA
AGATTTTTATGGGGGAATTTGATGGCACCGTCTTTCTCTAAAAGCTGCTC
AAAAGTAGATGTATGATCAGAATACACTATCCTcaaacatctttcgtgga
ggtgatttattttttgatctaGCCTGCGAACATGAAACATCCAGACAAGC
GAACAATAATTGAATTGACTTCGAAAGAAGGCATTCATGAgcctttgctt
tttcttttgattcttGTACGGTGCTACCCTCGCAAGTGCACTGATTTTCT
GGCTAGCTTTCTTATAAATCGTGTTAATATGTGGCTCAAAAGTCAGACAG
TTGTCAAAAGTTAATCCTAGGATCTTGCCTGAGTTGCTGTTAAAGATGCG
TTCATTCTGTATAGTAATGAAGATTTCTTTGCTGGTATTGTTAGCTATCA
ACTCAGACTTGTCTGCATttcctttcatttgattttgggtTATCCACTCA
AAGATGATAGCAGCTCCATTCGAGAGCTCCTCGCCAACCTGTTCGCAAGA
ATCAGCTATCACAAAAGGTGTTGTATCGTCTGCATAATTcagtacatttc
tattttcaagaaaGTAGAACAAATCTCTCATGTAGATGTTAAATAGTAGT
GGCCCTAGAATGGATACTTGGGGAACACCTACTTTAACATTATGCCAGGT
GCTGTAATGGTcgccaattttcgttctttgCTTTCTATCTGATAGATAGG
CTGCTATGAGACCTAAGGCACTCCTTGAAAATCCGTACGCTTCAAGTTTA
GCAATCAATAGTTCGTGCGAGATGCAGTCGAAAGCTTTTGATAAGTCAAT
GAGTAGCGctgcaaactttttcttttcatctgtaGCTTTCTTCCAAATTT
CAGTCATGACTAAAAGTGGAGTTTGTGTACTCATTCCTTTTCTATATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052193-exon-scaffold_212-1491911889:17349..18351 | TCONS_00052193-exon-scaffold_212-1491911889:17349..18351 | Clytia hemisphaerica | exon |
| TCONS_00052193-exon-scaffold_212-1510915933:17349..18351 | TCONS_00052193-exon-scaffold_212-1510915933:17349..18351 | Clytia hemisphaerica | exon |
| TCONS_00052193-exon-scaffold_212-1575043694:17349..18351 | TCONS_00052193-exon-scaffold_212-1575043694:17349..18351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_212 | supercontig | scaffold_212:17349..18351 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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