TCONS_00052181 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052181
Unique Name	TCONS_00052181
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1734

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_212:80399..84548+

transcript sequence

>TCONS_00052181 ID=TCONS_00052181|Name=TCONS_00052181|organism=Clytia hemisphaerica|type=transcript|length=1734bp
AGTAGCTTTTATAAAGAGCTAGAGATAATTCTGCTGAATTTTTAAATGTG
ATTTGAGTGAATTATGTCTAAGAaaaattgtCAATTCAAAAGCCGACTTG
GAATTTATCTTGTCAAAGCTGATCTTCCTCAACATGTCTTGGATGCAATC
TACTGGAACAAAATTCCCAAAACTGCTGGGATGTTTGGCGGAATCATGTT
TTTGCTTATGTCACTCTATTGGTACCCATTCCTCACTGTTGTGACAAATT
TCTGTCTTGCACTGTTAGCTGTTGCCTTTTTATATCGTATTGGAATGACC
ATTGTCAATGCTGTTCAGAAAACTTCACCAGAGCATCCATTtcaaaaatt
gcTGGAAAAAGACATCAAAGTTTCTGATGAGAGAGTTGATTCTTTCTCTA
AATGCTTGGCAAAAGAAATCAACTGCACTGTCAAATGTTCGCAAGATTTG
TTCCTCGTGAAAGATGTATTCAAGTCAATGAAGTTTGGAGTTTTATTGTG
GTTGTTGTCTTATGTTGCTTCATGGATCAGTCCATTAACAATGCTCACGC
TGTGTGTTCTTCTTGCCTTTACTGTTCCAAAATTGTATGAAGAAAAATAT
GTTCAAATTGATGAGGCTATCAAAAGTGTTACAGTTGCTATTGGAGCAGT
GCTTGAAACGGCGAAACAAAAGCTTCCACCTTCAGCTCTAAAGTATTTGG
GAGTAAATGaggagaagaaaacaaattgAAACCGTAGGACAACCATATTA
CCAAATGGAAGGACTAGTAATTGAAATTTAGGCTCCATTATATTCTGGCA
CCTGTGACAGTTTCTCAAAAAGACATTTAGCAAAATCAACATGTTGTTGC
ATAGAATGAATATATTTTACTATAGGTTTTTACAACATTTTTAACAGAGA
CTAAATCGTCGTCTTAGTTGACTAATGCTagttctgttttgtttttgttt
ttgattgtaaAAGTGAATTTGTTCGGTTTTAATACCACGCATGTGCTTTG
CTGAGAAAATACTTCCACGGGTACGATACATTCCATCTCGTGATAATAAG
TGTatggtgtttttgttttttgctttattttagaaagatttttatttaaa
atgaaaattaatttttaattttagttcTTAGGCATTTGATGTATTATTTA
AATGAGATTTTAATTTCAGTCATATAGTCTTTAGTCATAGTCATTTTACC
ATTAACACATCATCTAAAGTGCACTTTTTTGTGTATCTCTAGTGTAGATA
TATCCATAAAAAGTtacataaaaatttataaagtcaTTATAACTGGACTA
AGCACGCTAAAATGTATTATTGCAAGTATATATtatgacattttaatgaa
atttatttgtttGGGATTTTGCATTTCAACTGTAGTATAAACATTTTTTC
GATAATATTTTTGCAAATTCTTCTTAGAAATCTATTCCATCTTTACAGTC
CTTTTGTAAAACCGGTTGAAGAAAAATGCGccctttttctttttaacttg
AACGCACATAAACAAAGTCTAGAATTTCTCAAGTTGTTGAATGAAAagta
tttgaatttttgaatttttaattgTAATAATTTATTCCCAAAGAGTATCA
TTTAGAAAATATATCAGAATTTAGAGCATCTTTCAGTTACAAAATTATGT
TGTATGTTGTGCTTTGATTGTGTTTTTAAACTTTCTatcatataaaaatt
ttgaatgattaATTTCAGAAGGTTTGAATTACTG

Run BLAST on NCBI

transcript from alignment at scaffold_212:80399..84548+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052181 ID=TCONS_00052181|Name=TCONS_00052181|organism=Clytia hemisphaerica|type=transcript|length=4150bp|location=Sequence derived from alignment at scaffold_212:80399..84548+ (Clytia hemisphaerica)
AGTAGCTTTTATAAAGAGCTAGAGATAATTCTGCTGAATTTTTAAATGTG
ATTTGAGTGAATTATGTCTAAGAGTAAGTAATTTGTATGAGAGATCTTAT
AGTTttgattattaaaaaaatgcatCATTCTGATTTAATAAGTTTTATCT
ATTTCATGTATATAGATAAGGGTTAATTATAGCTCCTTGAATGGATCTTT
AAGTCTAGGTAGTCAAAAAGTAAACTAATGAGAAAAGACCAGATTTAGCT
CTCGTTGATCAAATTTAAttcagattttttgtcaaaactttCCGGAACAT
GAaagaaattttctgaaaaagggctAAGTTCCTAAATTGCCTCACACAAA
ATTTAAGATCTTCGATTTACAactaaagttttgattttgttttattttag
aaaattgtCAATTCAAAAGCCGACTTGGAATTTATCTTGTCAAAGCTGAT
CTTCCTCAACATGGTATGAAATACAACACAATTCCCCTATATTTACGTCT
TCAAGTCTCAACAAATGGCTTCCTCCAACATATTTATCTTTAACTCAAGT
TACTTGTTAAATGGAAATTTCATTTAtcaatttattcatttttaaattaa
atgtCTTGAATTTGGAAGGAATTCTATTTGAAGCCATTTNAAATTTCATT
TAtcaatttattcatttttaaattaaatgtCTTGAATTTGGAAGGAATTC
TATTTTAAGCCATTTCAGACTAAATGTGTAAACAAAAGGTCTGAACCCTA
GAATATATTTCGGTGCACTTTATAAAAACTTTTGTTgctcttttaaaaat
ttttaaacattcaCTTATTTGTTTCATATACAATATAGTCTTGGATGCAA
TCTACTGGAACAAAATTCCCAAAACTGCTGGGATGTTTGGCGGAATCATG
TTTTTGCTTATGTCACTCTATTGGTACCCATTCCTCACTGTTGTGACAAA
TTTCTGTCTTGCACTGTTAGCTGTTGCCTTTTTATATCGTATTGGAATGA
CCATTGTCAATGCTGTTCAGAAAACTTCACCAGAGCATCCATTtcagtaa
gttttatttttgtcttGGCTTGGTCTCCTCTTCATATAAATGAAGAAGAT
CCATAATCCTGGAAAACCAAACTGGCTTGAAAAATTATGCCTTTCTTCAA
TCAAATGTAGATTGACTTAATGATAGacttttaaaatgtaaacattaacG
TCACGAGATCATGATGAACCAAAAagcaatttcagaaaaaattgcTATGG
GTTGTTcataaatttgaatattttagtCACACAAAACCAAATTGGGACAA
TGTTTGATGTCTGGTGGCTTTTCCCTAACTTTATACATCGtttcttttct
catttttttatagaaaattgcTGGAAAAAGACATCAAAGTTTCTGATGAG
AGAGTATGGCATATTTTATTTCATGgttgttaatttttttacaaCATTAT
TTAAGTTACTTTCAACTCTTAGGCCATaaatttgctttttataaaCAGTA
ATAATCGTTAATAATACTCATAAATAACACTATTACTTGCTCTTAGGTTG
ATTCTTTCTCTAAATGCTTGGCAAAAGAAATCAACTGCACTGTCAAATGT
TCGCAAGATTTGTTCCTCGTGAAAGATGTATTCAAGTCAATGAAGGTAAA
AAGTAATCTAGATATATTATTATACAGTTTTCCTTTTCTAGTCAAATTCT
TAGTCAAGAAGTAGCTCTTGAACCAGCTTGAACCACTTTTCGTTTTAGCC
AGATTCAAATCTATGATCCtttcatggtttcagcccacttttcaggtaca
CGCAACGAAACATGGTACCCCTGATGATTTAGTTCTCCTTTGccttgagt
taggtaccccatTCACCTAAAAAATCTGGTACCGGGTGAAAATTGAACAT
ATGCATATGTATTGTGTCAAGATCTGTTACTATGCTCTAAATATGAATGG
CAGCCATGGATCAAAATAACAATATATAGATTCTACCAAAGTTGAAAATG
GAAATCTGGAATGCCGAATTGTCTGCGTTTCAATGTGAAAATACTGGGAA
TTAGCCCCCAGAGTTTCTATCAGATAAACTGGGTACCCTTAACTAATTGG
TAACCTTATCAAATTGCTAATTTTCAGCTCCCATCTCTCTAACGATTAGT
GGCTCCTTTAGAAATCTGGAGGGTCTGAAACCATGCCTTTTTATCACAGT
GTATAATTAAAACGATGCGTTTAAAGGTTTGGTATTAATTAATCAACCTT
TTTCCTCATAGTTTGGAGTTTTATTGTGGTTGTTGTCTTATGTTGCTTCA
TGGATCAGTCCATTAACAATGCTCACGCTGTGTAAGTGAATTCGAACAGC
TCCCACAACAAATGTACAAATACTGCAGAATGTTGAAGAAATGATGCTCT
TGACCGTACTTTTTATACTCTTTTTTTCAATCAAGTTTGTAAAgtcaatt
ttgtgaaaattttgatcAGGGATATTGGAACAatgaatttagaacgccat
cATTGGGAATTATAAGGTCACAATATTACGAAAACTCAACCATTATTAAA
CTAACAACCTTCTATTTTTTAGGTGTTCTTCTTGCCTTTACTGTTCCAAA
ATTGTATGAAGAAAAATATGtaagttttctttgttttttgtttcGTTTTG
GTTGATTTTCTAATGTTAAAATTGCTCTTCATTCTTGTTAGTTACCATAA
TCGACAATATTgccaaaagtttttaaaaggcTAAAGTGTTATatattatt
cttaaaatttaaaacaaattttttcccCCAGGTTCAAATTGATGAGGCTA
TCAAAAGTGTTACAGTTGCTATTGGAGCAGTGCTTGAAACGTAAGATTTT
TAAGTTGATTTCAGTACATACATGGCATGTCCTTTCTGATCTTTATGTTC
ATTGGGTCACTGATTATAAATTTATGAAAACGAAGCTTTTCAAGATGTAT
CAAGGTCCTCAGTAGAAAAACAAATCCATAGGTGCATTGAGGATTTCACT
CAATACTTTTATACTAATACTGGTCGTTAATCTAAAATCCTTTATGCATT
ACTCTCTTAATTTTATTTCCTTCAGGGCGAAACAAAAGCTTCCACCTTCA
GCTCTAAAGTATTTGGGAGTAAATGaggagaagaaaacaaattgAAACCG
TAGGACAACCATATTACCAAATGGAAGGACTAGTAATTGAAATTTAGGCT
CCATTATATTCTGGCACCTGTGACAGTTTCTCAAAAAGACATTTAGCAAA
ATCAACATGTTGTTGCATAGAATGAATATATTTTACTATAGGTTTTTACA
ACATTTTTAACAGAGACTAAATCGTCGTCTTAGTTGACTAATGCTagttc
tgttttgtttttgtttttgattgtaaAAGTGAATTTGTTCGGTTTTAATA
CCACGCATGTGCTTTGCTGAGAAAATACTTCCACGGGTACGATACATTCC
ATCTCGTGATAATAAGTGTatggtgtttttgttttttgctttattttaga
aagatttttatttaaaatgaaaattaatttttaattttagttcTTAGGCA
TTTGATGTATTATTTAAATGAGATTTTAATTTCAGTCATATAGTCTTTAG
TCATAGTCATTTTACCATTAACACATCATCTAAAGTGCACTTTTTTGTGT
ATCTCTAGTGTAGATATATCCATAAAAAGTtacataaaaatttataaagt
caTTATAACTGGACTAAGCACGCTAAAATGTATTATTGCAAGTATATATt
atgacattttaatgaaatttatttgtttGGGATTTTGCATTTCAACTGTA
GTATAAACATTTTTTCGATAATATTTTTGCAAATTCTTCTTAGAAATCTA
TTCCATCTTTACAGTCCTTTTGTAAAACCGGTTGAAGAAAAATGCGccct
ttttctttttaacttgAACGCACATAAACAAAGTCTAGAATTTCTCAAGT
TGTTGAATGAAAagtatttgaatttttgaatttttaattgTAATAATTTA
TTCCCAAAGAGTATCATTTAGAAAATATATCAGAATTTAGAGCATCTTTC
AGTTACAAAATTATGTTGTATGTTGTGCTTTGATTGTGTTTTTAAACTTT
CTatcatataaaaattttgaatgattaATTTCAGAAGGTTTGAATTACTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033042	XLOC_033042	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_212	supercontig	scaffold_212:80399..84548 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.557896	0.107057	1.18627	0	0	0	0	4.88272	2.1359	0	3.40613	9.38426	8.08904	2.36044	0.804903	8.00259	10.4413	12.9918	12.2901	22.2281	25.9529	3.53614	7.80521	0	0	3.10637	4.95915	1.48768e-08	0

Blast

[Close]

BLAST of TCONS_00052181 vs. Swiss-Prot (Human)
Match: RTN4 (Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 9.539e-31
Identity = 63/159 (39.62%), Postives = 98/159 (61.64%), Query Frame = 1

Query:  136 VLDAIYWNKIPKTAGMFGGIMFLLMSLYWYPFLTVVTNFCLALLAVAFLYRIGMTIVNAVQKTSPEHPFQKLLEKDIKVSDERVDSFSKCLAKEINCTVKCSQDLFLVKDVFKSMKFGVLLWLLSYVASWISPLTMLTLCVLLAFTVPKLYEEKYVQID 612
            V+D +YW  I KT  +FG  +FLL+SL  +  ++V     LALL+V   +RI   ++ A+QK+   HPF+  LE ++ +S+E V  +S      +NCT+K  + LFLV D+  S+KF VL+W+ +YV +  + LT+L L ++  F+VP +YE    QID
Sbjct: 1005 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 1163

The following BLAST results are available for this feature:

BLAST of TCONS_00052181 vs. Swiss-Prot (Human)

BLAST of TCONS_00052181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RTN4	9.539e-31	39.62	Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2	[more]

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TCONS_00052181 (transcript) - C. hemisphaerica