TCONS_00052175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052175
Unique NameTCONS_00052175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052175 ID=TCONS_00052175|Name=TCONS_00052175|organism=Clytia hemisphaerica|type=transcript|length=633bp
TCTTTGTATATAAGAAAGCGGTGTTTTATCAGACGCTCAAGTATGACCTG
CATCAATTATTGCCAGATACTGCTGAAATTTACGTTCGAACACTTTCTGA
TAGTACAATCACCTCATCCTTAAGCACGTATGGAACTAACTTGGTAGCCG
GCACAGCTGCTTTGAACCATGATGGTTCTGTGTTTGTTTATACATACAAT
GATTTCACAGATACTTGGATCCAGAAAGAGAGGTTGCTACCGTCGCATAA
GGTCAATTATTTTGGGTGCTCTGTTGCGACCACAGGCAATTTAACAGTGG
TTGGAAGTGATTTTAGTGAGGCAGAAGGTTCACCAGGAGGCAGAGCATAT
GTTTATAGCACGTGGGTACCACCTGCAACTCGTATGCCTACCACAAACCA
ATCAAAGACCACTAGTAACGAAAAAACGACAACCATTACACCGGGCAACC
AAGGGTCCAGTATGATGGTCACAATTATAAGCATTTGTTCAGCATTTCTT
GTGTTGACTTTCACCATTGTTGCTGTTTGCTATCGATTGCAGAAATACTC
ATACAAGCGATTCGACGAGGAAGATCGTCGTCCACCTTCAAGACTTCCAA
ACATTGCAGAAGACATCCATGAAGGATCGGAAC
Run BLAST on NCBI

protein sequence of TCONS_00052175-protein

>TCONS_00052175-protein ID=TCONS_00052175-protein|Name=TCONS_00052175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
FVYKKAVFYQTLKYDLHQLLPDTAEIYVRTLSDSTITSSLSTYGTNLVAG
TAALNHDGSVFVYTYNDFTDTWIQKERLLPSHKVNYFGCSVATTGNLTVV
GSDFSEAEGSPGGRAYVYSTWVPPATRMPTTNQSKTTSNEKTTTITPGNQ
GSSMMVTIISICSAFLVLTFTIVAVCYRLQKYSYKRFDEEDRRPPSRLPN
IAEDIHEGSE
Run BLAST on NCBI

transcript from alignment at scaffold_212:9..2380+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052175 ID=TCONS_00052175|Name=TCONS_00052175|organism=Clytia hemisphaerica|type=transcript|length=2372bp|location=Sequence derived from alignment at scaffold_212:9..2380+ (Clytia hemisphaerica)
TCTTTGTATATAAGAAAGCGGTGTTTTATCAGACGCTCAAGTATGACCTG
CATCAATTATTGCCAGATACTGCTGAAATTTACGTTCGAACACTTTCTGA
TAGTACAATCACCTCATCCTTAAGCACGTATGGAACTAACTTGGTAGCCG
GCACAGCTGCTTTGAACCATGATGGTTCTGTGTTTGTTTATACATACAAT
GATTTCACAGATACTTGGATCCAGAAAGAGAGGTTGCTACCGTCGCATAA
GGTAAGTGTTTTATTCATTAGCTTCACCATTCTTGACTATTAGTTATTTT
TTGTGTTATAAAGGCaaaacaaatttaatttattgtctTAAGGGCAAACC
TCCAGAAAGatatgagtcggtcggtcggtatcataaaaatagatttgtca
aatatcaaaaacaaaaccttccgTTGAGATTTTTCTAATCCAAGGCTTTT
TCAACTTGTTCATTTGTAAAAACGAAAAACCATAAGTCTAACCTTGAATA
TTACATattcaaaattatcatttttgaatgttcagggtcggtcggatcCG
TAAAACAATAAGTTAATNACTTGTTCATTTGTAAAAACGAAAAACCAAAA
GTCTAACCTTGAGTATTACATattcaaaattatcatttttgaatgttcag
ggtcggtcggatcCGTAAAACAATAAGTTAATTTGTTCTCGCctcaatga
taattttaataAGATTATCATCTTAAAGGTTTTTTACGGGAATAAAAGGA
GCATATTTTAGGCTGTGTCTTCGTGCtgagtcagaaaaatttaaagctac
ttttttacgcaacgatatcctgcaaacaagtgaaagaacgaaagttgttt
cgagaagtgacctcacattctattacttttgtaaataaaaaaatagcaaa
gttgatttAGAGGAATTTTACAAtcgattgttttgatttataagatagaa
aacgttctatttttatttttactacatcagcatcatcagaccttccaatc
aaaacaaaacctttaacctgCAAGCTTGTAGCACAAccaacattttctca
aatttttctttatactgAAGAAACTGTACTGATTACACCTGTATGGACTG
ACTGCAATTAATCGAAACCATTATGACAGCATACCTTCATTATACACAAC
AGTAGATCATGACGCAGCAATCATAATCTAGTGTTTtagtttaaaatttt
ataaaatgtagGTTATATTTAAACTTGTTTCAAGGTCAATTATTTTGGGT
GCTCTGTTGCGACCACAGGCAATTTAACAGTGGTTGGAAGTGATTTTAGT
GAGGCAGAAGGTTCACCAGGAGGCAGAGCATATGTTTATAGCACGTGGGT
ACCACCTGCAACTCGTATGCCTACCACAAACCAATCAAAGACCACTAGTA
ACGAAAAAACGACAACCATTACACCGGGCAACCAAGGTACCATCAATTAT
AGTAAACAGAGTttgaaaggaaacaaaaaactcggaaaataaaaaagctt
atAACATAAGGGAGACTATGGCCCCTTTGATTACTAATTTCAGAGCccct
ttgcttttttaaacattagAACTAggagttttaagccaaaaatactgaaa
agatttttgtgcTTACTTTGCTCGcttgactttttttatttcacttttga
TAGGGGGCGCCAACATCAAAAATTGCCTCCCCGTACGGCCCAATTTTGAT
CGACCCACCACGCCACTGACACAGACAAACCCAGATAGCTAATCCATGTG
AAAATCTTTTCCAAAGTCAAATCATATTGATTTTGTACGATTTCAGGGTC
CAGTATGATGGTCACAATTATAAGCATTTGTTCAGCATTTCTTGTGTTGA
CTTTCACCATTGTTGCTGTTTGCTATCGATTGCAGAAATACTCATACAAG
CGATTCGACGAGGAAGGTATGTTCTGTGATTTTTAGAAAGATCTTTAAGG
GTACGATGTACATACTTCAGCATATTTCAAAGAGCCAAATTTCGgttcat
taaaaaaatcaaaagggaAATATAAAACAACTCGTCGGGTACTCTCGACG
GTTTCTTTGTAGGAAATTTGAACTTAATTTTCATCCATCTTATTTTCGCA
CTATGAGGTTACAAGCTTGGCGTTTTTCGCTATTGATTTTCGCAGTTGAC
ATCCACTACGAAATCTTTTCTATTTCTCAGATTTTTGAGTTTAGGATTAA
TTTTCGCCGTAGACACCCCAAAAATCTCATAATTAAAAATCTAAATCGTG
CATTTTGAAGCTAAAATCGTGTATTTATATAATATATTctaacaaaaaaa
tttattcgacAGATCGTCGTCCACCTTCAAGACTTCCAAACATTGCAGAA
GACATCCATGAAGGATCGGAAC

Coding sequence (CDS) from alignment at scaffold_212:9..2380+

>TCONS_00052175 ID=TCONS_00052175|Name=TCONS_00052175|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_212:9..2380+ (Clytia hemisphaerica)
TTTGTATATAAGAAAGCGGTGTTTTATCAGACGCTCAAGTATGACCTGCA
TCAATTATTGCCAGATACTGCTGAAATTTACGTTCGAACACTTTCTGATA
GTACAATCACCTCATCCTTAAGCACGTATGGAACTAACTTGGTAGCCGGC
ACAGCTGCTTTGAACCATGATGGTTCTGTGTTTGTTTATACATACAATGA
TTTCACAGATACTTGGATCCAGAAAGAGAGGTTGCTACCGTCGCATAAGG
TCAATTATTTTGGGTGCTCTGTTGCGACCACAGGCAATTTAACAGTGGTT
GGAAGTGATTTTAGTGAGGCAGAAGGTTCACCAGGAGGCAGAGCATATGT
TTATAGCACGTGGGTACCACCTGCAACTCGTATGCCTACCACAAACCAAT
CAAAGACCACTAGTAACGAAAAAACGACAACCATTACACCGGGCAACCAA
GGGTCCAGTATGATGGTCACAATTATAAGCATTTGTTCAGCATTTCTTGT
GTTGACTTTCACCATTGTTGCTGTTTGCTATCGATTGCAGAAATACTCAT
ACAAGCGATTCGACGAGGAAGATCGTCGTCCACCTTCAAGACTTCCAAAC
ATTGCAGAAGACATCCATGAAGGATCGGAATTTGTATATAAGAAAGCGGT
GTTTTATCAGACGCTCAAGTATGACCTGCATCAATTATTGCCAGATACTG
CTGAAATTTACGTTCGAACACTTTCTGATAGTACAATCACCTCATCCTTA
AGCACGTATGGAACTAACTTGGTAGCCGGCACAGCTGCTTTGAACCATGA
TGGTTCTGTGTTTGTTTATACATACAATGATTTCACAGATACTTGGATCC
AGAAAGAGAGGTTGCTACCGTCGCATAAGGTCAATTATTTTGGGTGCTCT
GTTGCGACCACAGGCAATTTAACAGTGGTTGGAAGTGATTTTAGTGAGGC
AGAAGGTTCACCAGGAGGCAGAGCATATGTTTATAGCACGTGGGTACCAC
CTGCAACTCGTATGCCTACCACAAACCAATCAAAGACCACTAGTAACGAA
AAAACGACAACCATTACACCGGGCAACCAAGGGTCCAGTATGATGGTCAC
AATTATAAGCATTTGTTCAGCATTTCTTGTGTTGACTTTCACCATTGTTG
CTGTTTGCTATCGATTGCAGAAATACTCATACAAGCGATTCGACGAGGAA
GATCGTCGTCCACCTTCAAGACTTCCAAACATTGCAGAAGACATCCATGA
AGGATCGGAATTTGTATATAAGAAAGCGGTGTTTTATCAGACGCTCAAGT
ATGACCTGCATCAATTATTGCCAGATACTGCTGAAATTTACGTTCGAACA
CTTTCTGATAGTACAATCACCTCATCCTTAAGCACGTATGGAACTAACTT
GGTAGCCGGCACAGCTGCTTTGAACCATGATGGTTCTGTGTTTGTTTATA
CATACAATGATTTCACAGATACTTGGATCCAGAAAGAGAGGTTGCTACCG
TCGCATAAGGTCAATTATTTTGGGTGCTCTGTTGCGACCACAGGCAATTT
AACAGTGGTTGGAAGTGATTTTAGTGAGGCAGAAGGTTCACCAGGAGGCA
GAGCATATGTTTATAGCACGTGGGTACCACCTGCAACTCGTATGCCTACC
ACAAACCAATCAAAGACCACTAGTAACGAAAAAACGACAACCATTACACC
GGGCAACCAAGGGTCCAGTATGATGGTCACAATTATAAGCATTTGTTCAG
CATTTCTTGTGTTGACTTTCACCATTGTTGCTGTTTGCTATCGATTGCAG
AAATACTCATACAAGCGATTCGACGAGGAAGATCGTCGTCCACCTTCAAG
ACTTCCAAACATTGCAGAAGACATCCATGAAGGATCGGAATTTGTATATA
AGAAAGCGGTGTTTTATCAGACGCTCAAGTATGACCTGCATCAATTATTG
CCAGATACTGCTGAAATTTACGTTCGAACACTTTCTGATAGTACAATCAC
CTCATCCTTAAGCACGTATGGAACTAACTTGGTAGCCGGCACAGCTGCTT
TGAACCATGATGGTTCTGTGTTTGTTTATACATACAATGATTTCACAGAT
ACTTGGATCCAGAAAGAGAGGTTGCTACCGTCGCATAAGGTCAATTATTT
TGGGTGCTCTGTTGCGACCACAGGCAATTTAACAGTGGTTGGAAGTGATT
TTAGTGAGGCAGAAGGTTCACCAGGAGGCAGAGCATATGTTTATAGCACG
TGGGTACCACCTGCAACTCGTATGCCTACCACAAACCAATCAAAGACCAC
TAGTAACGAAAAAACGACAACCATTACACCGGGCAACCAAGGGTCCAGTA
TGATGGTCACAATTATAAGCATTTGTTCAGCATTTCTTGTGTTGACTTTC
ACCATTGTTGCTGTTTGCTATCGATTGCAGAAATACTCATACAAGCGATT
CGACGAGGAAGATCGTCGTCCACCTTCAAGACTTCCAAACATTGCAGAAG
ACATCCATGAAGGATCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033040XLOC_033040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052175-exon-scaffold_212-1491911889:9..259TCONS_00052175-exon-scaffold_212-1491911889:9..259Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1510915933:9..259TCONS_00052175-exon-scaffold_212-1510915933:9..259Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1575043694:9..259TCONS_00052175-exon-scaffold_212-1575043694:9..259Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1491911889:1243..1444TCONS_00052175-exon-scaffold_212-1491911889:1243..1444Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1510915933:1243..1444TCONS_00052175-exon-scaffold_212-1510915933:1243..1444Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1575043694:1243..1444TCONS_00052175-exon-scaffold_212-1575043694:1243..1444Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1491911889:1805..1924TCONS_00052175-exon-scaffold_212-1491911889:1805..1924Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1510915933:1805..1924TCONS_00052175-exon-scaffold_212-1510915933:1805..1924Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1575043694:1805..1924TCONS_00052175-exon-scaffold_212-1575043694:1805..1924Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1491911889:2321..2380TCONS_00052175-exon-scaffold_212-1491911889:2321..2380Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1510915933:2321..2380TCONS_00052175-exon-scaffold_212-1510915933:2321..2380Clytia hemisphaericaexon
TCONS_00052175-exon-scaffold_212-1575043694:2321..2380TCONS_00052175-exon-scaffold_212-1575043694:2321..2380Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052175-proteinTCONS_00052175-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:9..2380 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.0138433	0	0.278244	0.28896	0	0	0.192892	0.0664059	0	0	0.419099	0.240873	0.196699	0.454455	2.60527	2.32514	0.847984	0.250276	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013517FG-GAP
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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