TCONS_00052172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052172
Unique NameTCONS_00052172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052172 ID=TCONS_00052172|Name=TCONS_00052172|organism=Clytia hemisphaerica|type=transcript|length=504bp
CCAGGACCAGCTCGTCCAATTAAATTTCCATGTGGCGAGTGTTACAAAGC
TGTGAAATGGGGTCAAAGAGCAATAGCTTGTGACTCGTGTGACCAATGGT
TCCACAAAGATTTATTGAAATGAGCAGTCTTATCTACCAAGCTTATGAAT
CAACTCCTGATCTCACCTGGGAATGATGCAACTGTGGTATCAAAAATATC
AGCCCATCATTATTCGACAATACCCTCAACCCCTCAACTGATTTAAACAT
TTCTAATGCCAGCGATGACACATCAAAGCTATTAGCCAAACAACTCCGCA
TCTTATGCATAAACTTCCGTAGTATCTGGGACAACTCCTAGAAGATGCGC
TATNATAAACTTTTGTAGTATCTGGGACAAGAAAGAACTCCTTGAAGATG
CGCTATTCGATGATAACATTGATGTTATCATTGGATCTGAAACCCACTTA
GATCCCTGTATCAAGGATAATGAATTTTTACCTGAAACATACAAGTGCTT
TCGC
Run BLAST on NCBI

transcript from alignment at scaffold_211:204653..205156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052172 ID=TCONS_00052172|Name=TCONS_00052172|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at scaffold_211:204653..205156 (Clytia hemisphaerica)
GCGAAAGCACTTGTATGTTTCAGGTAAAAATTCATTATCCTTGATACAGG
GATCTAAGTGGGTTTCAGATCCAATGATAACATCAATGTTATCATCGAAT
AGCGCATCTTCAAGGAGTTCTTTCTTGTCCCAGATACTACAAAAGTTTAT
NATAGCGCATCTTCTAGGAGTTGTCCCAGATACTACGGAAGTTTATGCAT
AAGATGCGGAGTTGTTTGGCTAATAGCTTTGATGTGTCATCGCTGGCATT
AGAAATGTTTAAATCAGTTGAGGGGTTGAGGGTATTGTCGAATAATGATG
GGCTGATATTTTTGATACCACAGTTGCATCATTCCCAGGTGAGATCAGGA
GTTGATTCATAAGCTTGGTAGATAAGACTGCTCATTTCAATAAATCTTTG
TGGAACCATTGGTCACACGAGTCACAAGCTATTGCTCTTTGACCCCATTT
CACAGCTTTGTAACACTCGCCACATGGAAATTTAATTGGACGAGCTGGTC
CTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033037XLOC_033037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052172-exon-scaffold_211-1491911889:204653..205156TCONS_00052172-exon-scaffold_211-1491911889:204653..205156Clytia hemisphaericaexon
TCONS_00052172-exon-scaffold_211-1510915933:204653..205156TCONS_00052172-exon-scaffold_211-1510915933:204653..205156Clytia hemisphaericaexon
TCONS_00052172-exon-scaffold_211-1575043694:204653..205156TCONS_00052172-exon-scaffold_211-1575043694:204653..205156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_211supercontigscaffold_211:204653..205156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.444525	0.623071	0.713749	1.13478	0.901417	0.135691	0.490005	0.613997	0.347257	0.376592	0	0.168517	0.23995	0.110024	0.0755092	0.181584	0	0	0	0.267557	0.238703	0	0.149735	0	0	0.379609	0.685769	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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