|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052162 ID=TCONS_00052162|Name=TCONS_00052162|organism=Clytia hemisphaerica|type=transcript|length=1354bp
aaaaataaaacaaacaaactaatcAAACTCAACAAAGATGAGAATACGTA
AGAAAATGCAAACCATTATTtattttggaatgtttttcggTTTATGTATT
GTCTTTTATTACGCCCTCATTCACGCCACCAACCAGTACAAAGATCAACC
CATAAACCAAATCCACCAATCcaagaacaattttccaaaacacACCAATC
CACCTTCAGAACTAGACATCATAATGGATAGAGCAATGCAATGGGCATCA
CAAACCAGAGCACAGAAGTTGGCAACTATGCTACAGAACCCTGTTTACGA
ACGTTTTCAGTTGAAAGATACAGTGCGCAAAAATGATGGAAGTGTGGTGA
AAATCAAACGGAAGAAAGTTGATTTGCTATTGATTGTTTCATCAGGACCA
AGAAGGTTTGACCGGAGACAAGCAATTCGCCAAAGCTGGTGGAAAGATTG
CGTTCCTACTTCCAAGGTTATCCCGAAATGTTGGTTTCTGACAGACTACC
AGTATCCATCAGATAAGTATTATCAAAACAtaacgaaagaaaaaaacacc
taCAAAGATGTTTATTTACAACCGCTGCGTGGTGGAATCGAGTTTGGGAA
GCGTTTCATGTATCACATGTTATGGGCACTCATTCATTacgatttcaaat
attttgttcgAATAGATGAcgattattttctttgtttacatCGTTTGTTA
AAGGAACTTCCCATTGCTCCGCCATTAAAGAATTTCCACTGGGGATACAC
CCATTGTATCCAAGAAATGATTAGACCTGAGGAGAGTCTTATTATGTTAT
CTAGAGATTTAGTTGAACGATTTTTACTTCAAGCTCCTCATGAGATCAGA
TGTCATCCGTGGGCTGATCAAATGATTGGAGTCTGGGTGACAGATATGAA
TATATTAACTTTATTTCGTACTGACGATCGAGTACACCATGCCCCTATTG
TAGACAAATCACCTTATTTGAGACTGGAgaaaaaagtatgtaacaagtaT
ATAGCTATACACGGCACTTATCCCAAAGACATGAAATTATTCTGGAGTCG
TCGTGGAAACCCGATTCAAGAATTCTCCTCCGAGAAAGATCGCGATAAAA
CTATTGGTAACGTTTTTATTAATTCAGCGGAATGTGAAAAACCGcataat
tttaatttcttactTTTTGAACCGGAATGGCAATACGAACCGAAACGTTG
TATTTATAATCCGACTTGGGATACAAGTAAACAAAACACTGTTGGTGGTG
TGTATGATGGCAGAGAGGATAATAAAAGGCTGGCTGACCAAGATGTCGAA
TATTTTGTAGGCAATGAttaatttccttttttaattCCTAGTACTTATTC
CCCg Run BLAST on NCBI protein sequence of TCONS_00052162-protein >TCONS_00052162-protein ID=TCONS_00052162-protein|Name=TCONS_00052162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MRIRKKMQTIIYFGMFFGLCIVFYYALIHATNQYKDQPINQIHQSKNNFP
KHTNPPSELDIIMDRAMQWASQTRAQKLATMLQNPVYERFQLKDTVRKND
GSVVKIKRKKVDLLLIVSSGPRRFDRRQAIRQSWWKDCVPTSKVIPKCWF
LTDYQYPSDKYYQNITKEKNTYKDVYLQPLRGGIEFGKRFMYHMLWALIH
YDFKYFVRIDDDYFLCLHRLLKELPIAPPLKNFHWGYTHCIQEMIRPEES
LIMLSRDLVERFLLQAPHEIRCHPWADQMIGVWVTDMNILTLFRTDDRVH
HAPIVDKSPYLRLEKKVCNKYIAIHGTYPKDMKLFWSRRGNPIQEFSSEK
DRDKTIGNVFINSAECEKPHNFNFLLFEPEWQYEPKRCIYNPTWDTSKQN
TVGGVYDGREDNKRLADQDVEYFVGND Run BLAST on NCBI transcript from alignment at scaffold_211:213299..215394+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052162 ID=TCONS_00052162|Name=TCONS_00052162|organism=Clytia hemisphaerica|type=transcript|length=2096bp|location=Sequence derived from alignment at scaffold_211:213299..215394+ (Clytia hemisphaerica)
aaaaataaaacaaacaaactaatcAAACTCAACAAAGATGAGAATACGTA
AGAAAATGCAAACCATTATTtattttggaatgtttttcggTTTATGTATT
GTCTTTTATTACGCCCTCATTCACGCCACCAACCAGTACAAAGATCAACC
CATAAACCAAATCCACCAATCcaagaacaattttccaaaacacACCAATC
CACCTTCAGAACTAGACATCATAATGGATAGAGCAATGCAATGGGCATCA
CAAACCAGAGCACAGAAGTTGGCAACTATGCTACAGAACCCTGTTTACGA
ACGTTTTCAGTTGAAAGATACAGTGCGCAAAAATGATGGAAGTGTGGTGA
AAATCAAACGGAAGAAAGTTGATTTGCTATTGATTGTTTCATCAGGACCA
AGAAGGTTTGACCGGAGACAAGCAATTCGCCAAAGCTGGTGGAAAGATTG
CGTTCCTACTTCCAAGGTaactatttttgttattttcttacGAACTAGAC
ATTTTGAATATGTGAAATACACTTAGATAAGATTTAGATTATATGTGTGA
TCTCTCTTCTTCTAGCATTTGAATGCTTAGTTCGATCTTTTTCTTGTAAC
CTGGTACCTGGTTTGAATCAATCCCTAAATCTTCTAAAGAAGTTTATAGA
GGTAGTGTAGTAGAATTAAATTCAATAAGGTATAGTTGGAGTCCTGTGTA
GGATTTAGAGTCATTTATTTCCAACATAAATTGCGTGATCTgcgtggttt
tcatacaaagaagaaaaataccTATAGAATTTTAAAAGTGTAAaacgtga
aaacaaagaaagttctAGATTCAACCTGTCAATGAAGCacaaattttaat
tcactttttcttgctcgGGAAAGGTTGACGATCAAAAATAAATAGCGGAG
TTTTTAAAAATCGGGTGACAAGTTTTAGCGAGACTAGATATTCAAATTGC
TTCTTTTGCTACTTTACCAGTGTCTCAAAGCGAAAAATGCATTTTCAAGT
TTAGAATAGCCGTAATACGGGGTTCCCGAGATTATTTCCCGCAACATTAA
TTAATTAAGATTAAATTTTCAAGTGAAAATTTTCTGTAAAATCtgctaat
ttttgaaaaatgacagCTTACAGGGCCACTTTCAATTGAATATTTCAGTA
CGTAAATTAAATCTCCCgaaaaattaatccgattaatgAACTTCTATCTT
CCGTTTAGGTTATCCCGAAATGTTGGTTTCTGACAGACTACCAGTATCCA
TCAGATAAGTATTATCAAAACAtaacgaaagaaaaaaacacctaCAAAGA
TGTTTATTTACAACCGCTGCGTGGTGGAATCGAGTTTGGGAAGCGTTTCA
TGTATCACATGTTATGGGCACTCATTCATTacgatttcaaatattttgtt
cgAATAGATGAcgattattttctttgtttacatCGTTTGTTAAAGGAACT
TCCCATTGCTCCGCCATTAAAGAATTTCCACTGGGGATACACCCATTGTA
TCCAAGAAATGATTAGACCTGAGGAGAGTCTTATTATGTTATCTAGAGAT
TTAGTTGAACGATTTTTACTTCAAGCTCCTCATGAGATCAGATGTCATCC
GTGGGCTGATCAAATGATTGGAGTCTGGGTGACAGATATGAATATATTAA
CTTTATTTCGTACTGACGATCGAGTACACCATGCCCCTATTGTAGACAAA
TCACCTTATTTGAGACTGGAgaaaaaagtatgtaacaagtaTATAGCTAT
ACACGGCACTTATCCCAAAGACATGAAATTATTCTGGAGTCGTCGTGGAA
ACCCGATTCAAGAATTCTCCTCCGAGAAAGATCGCGATAAAACTATTGGT
AACGTTTTTATTAATTCAGCGGAATGTGAAAAACCGcataattttaattt
cttactTTTTGAACCGGAATGGCAATACGAACCGAAACGTTGTATTTATA
ATCCGACTTGGGATACAAGTAAACAAAACACTGTTGGTGGTGTGTATGAT
GGCAGAGAGGATAATAAAAGGCTGGCTGACCAAGATGTCGAATATTTTGT
AGGCAATGAttaatttccttttttaattCCTAGTACTTATTCCCCg Coding sequence (CDS) from alignment at scaffold_211:213299..215394+ >TCONS_00052162 ID=TCONS_00052162|Name=TCONS_00052162|organism=Clytia hemisphaerica|type=CDS|length=2568bp|location=Sequence derived from alignment at scaffold_211:213299..215394+ (Clytia hemisphaerica)
ATGAGAATACGTAAGAAAATGCAAACCATTATTtattttggaatgttttt
cggTTTATGTATTGTCTTTTATTACGCCCTCATTCACGCCACCAACCAGT
ACAAAGATCAACCCATAAACCAAATCCACCAATCcaagaacaattttcca
aaacacACCAATCCACCTTCAGAACTAGACATCATAATGGATAGAGCAAT
GCAATGGGCATCACAAACCAGAGCACAGAAGTTGGCAACTATGCTACAGA
ACCCTGTTTACGAACGTTTTCAGTTGAAAGATACAGTGCGCAAAAATGAT
GGAAGTGTGGTGAAAATCAAACGGAAGAAAGTTGATTTGCTATTGATTGT
TTCATCAGGACCAAGAAGGTTTGACCGGAGACAAGCAATTCGCCAAAGCT
GGTGGAAAGATTGCGTTCCTACTTCCAAGGTTATCCCGAAATGTTGGTTT
CTGACAGACTACCAGTATCCATCAGATAAGTATTATCAAAACAtaacgaa
agaaaaaaacacctaCAAAGATGTTTATTTACAACCGCTGCGTGGTGGAA
TCGAGTTTGGGAAGCGTTTCATGTATCACATGTTATGGGCACTCATTCAT
TacgatttcaaatattttgttcgAATAGATGAcgattattttctttgttt
acatCGTTTGTTAAAGGAACTTCCCATTGCTCCGCCATTAAAGAATTTCC
ACTGGGGATACACCCATTGTATCCAAGAAATGATTAGACCTGAGGAGAGT
CTTATTATGTTATCTAGAGATTTAGTTGAACGATTTTTACTTCAAGCTCC
TCATGAGATCAGATGTCATCCGTGGGCTGATCAAATGATTGGAGTCTGGG
TGACAGATATGAATATATTAACTTTATTTCGTACTGACGATCGAGTACAC
CATGCCCCTATTGTAGACAAATCACCTTATTTGAGACTGGAgaaaaaagt
atgtaacaagtaTATAGCTATACACGGCACTTATCCCAAAGACATGAAAT
TATTCTGGAGTCGTCGTGGAAACCCGATTCAAGAATTCTCCTCCGAGAAA
GATCGCGATAAAACTATTGGTAACGTTTTTATTAATTCAGCGGAATGTGA
AAAACCGcataattttaatttcttactTTTTGAACCGGAATGGCAATACG
AACCGAAACGTTGTATTTATAATCCGACTTGGGATACAAGTAAACAAAAC
ACTGTTGGTGGTGTGTATGATGGCAGAGAGGATAATAAAAGGCTGGCTGA
CCAAGATGTCGAATATTTTGTAGGCAATGAttaaATGAGAATACGTAAGA
AAATGCAAACCATTATTtattttggaatgtttttcggTTTATGTATTGTC
TTTTATTACGCCCTCATTCACGCCACCAACCAGTACAAAGATCAACCCAT
AAACCAAATCCACCAATCcaagaacaattttccaaaacacACCAATCCAC
CTTCAGAACTAGACATCATAATGGATAGAGCAATGCAATGGGCATCACAA
ACCAGAGCACAGAAGTTGGCAACTATGCTACAGAACCCTGTTTACGAACG
TTTTCAGTTGAAAGATACAGTGCGCAAAAATGATGGAAGTGTGGTGAAAA
TCAAACGGAAGAAAGTTGATTTGCTATTGATTGTTTCATCAGGACCAAGA
AGGTTTGACCGGAGACAAGCAATTCGCCAAAGCTGGTGGAAAGATTGCGT
TCCTACTTCCAAGGTTATCCCGAAATGTTGGTTTCTGACAGACTACCAGT
ATCCATCAGATAAGTATTATCAAAACAtaacgaaagaaaaaaacacctaC
AAAGATGTTTATTTACAACCGCTGCGTGGTGGAATCGAGTTTGGGAAGCG
TTTCATGTATCACATGTTATGGGCACTCATTCATTacgatttcaaatatt
ttgttcgAATAGATGAcgattattttctttgtttacatCGTTTGTTAAAG
GAACTTCCCATTGCTCCGCCATTAAAGAATTTCCACTGGGGATACACCCA
TTGTATCCAAGAAATGATTAGACCTGAGGAGAGTCTTATTATGTTATCTA
GAGATTTAGTTGAACGATTTTTACTTCAAGCTCCTCATGAGATCAGATGT
CATCCGTGGGCTGATCAAATGATTGGAGTCTGGGTGACAGATATGAATAT
ATTAACTTTATTTCGTACTGACGATCGAGTACACCATGCCCCTATTGTAG
ACAAATCACCTTATTTGAGACTGGAgaaaaaagtatgtaacaagtaTATA
GCTATACACGGCACTTATCCCAAAGACATGAAATTATTCTGGAGTCGTCG
TGGAAACCCGATTCAAGAATTCTCCTCCGAGAAAGATCGCGATAAAACTA
TTGGTAACGTTTTTATTAATTCAGCGGAATGTGAAAAACCGcataatttt
aatttcttactTTTTGAACCGGAATGGCAATACGAACCGAAACGTTGTAT
TTATAATCCGACTTGGGATACAAGTAAACAAAACACTGTTGGTGGTGTGT
ATGATGGCAGAGAGGATAATAAAAGGCTGGCTGACCAAGATGTCGAATAT
TTTGTAGGCAATGAttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052162-exon-scaffold_211-1491911889:213299..213764 | TCONS_00052162-exon-scaffold_211-1491911889:213299..213764 | Clytia hemisphaerica | exon |
| TCONS_00052162-exon-scaffold_211-1510915933:213299..213764 | TCONS_00052162-exon-scaffold_211-1510915933:213299..213764 | Clytia hemisphaerica | exon |
| TCONS_00052162-exon-scaffold_211-1575043694:213299..213764 | TCONS_00052162-exon-scaffold_211-1575043694:213299..213764 | Clytia hemisphaerica | exon |
| TCONS_00052162-exon-scaffold_211-1491911889:214507..215394 | TCONS_00052162-exon-scaffold_211-1491911889:214507..215394 | Clytia hemisphaerica | exon |
| TCONS_00052162-exon-scaffold_211-1510915933:214507..215394 | TCONS_00052162-exon-scaffold_211-1510915933:214507..215394 | Clytia hemisphaerica | exon |
| TCONS_00052162-exon-scaffold_211-1575043694:214507..215394 | TCONS_00052162-exon-scaffold_211-1575043694:214507..215394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_211 | supercontig | scaffold_211:213299..215394 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
|
