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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052154 ID=TCONS_00052154|Name=TCONS_00052154|organism=Clytia hemisphaerica|type=transcript|length=2746bp
GGTCCTGATTTTAGCTACATATTGCCTAACACCtaatattcttcaaaaag
aaCGGCGCGCGGGAAGATCACCGTGGCGATTTCTATAAATTGTTCGAAAC
GTGACCAGTTTGCTCTGAAGTAGCAATAGCTTTAGTCTAGTTTTCTGAAA
ACATGGCGCACAAGCAGTGCGAAACGAAAAGATGGCTGAACTGTTGCTGG
TCGAAGAAACTCTTCAAAGTAACATGCTTTTCATGGAAGGAGACGAAGAG
ATAATTGGAGAAGAGGAGATTTTATCAACAGGACCTTTAATTGCTCTTCA
GCCATCAAGTGTAGATCATTTGATTGACCCAAATATAGAGGTAATCGAAG
AAGTTATTGACCAATCTTATGTTGATGATGTTCCGGTTATTGCACAAGAA
CAAGAGATTTCAACAGATGTACAGCCTCAGCAACAACCAAACAATAAGAA
AAGAAAGCTTAAAGGTAGTAAACCAAATTTCTTAAAGAAGTCTAAGGGAG
CTGATGGCGAAGAAGGAACAAGTGAAATTGATGTTCCCAGAAAGTGGGAG
CGGAAGAAAATTCAAATCAAGACACTAGAAGGAGAATTTTCTGTTACAGT
TTGGGCATCAGAAGACAAAACTGAGGAACAAGATAACCCAGAAGAAACGA
TAGAAGAAATTCAATCGTCCATCATTGTTGAAGAACAAAAGGAACCCGAA
CACGTGGAACAAATAGAACAACATCAAGACCAGAAAcaagttgaaaagaa
aaaagagaaaccAGCGAGCAAAGTTAGAAAAACAAGCGAAAGTAGAAATA
AATCTTCTGATGGACCAAAgaaaagcAAAAAGTCATCTAAACCTAAGGAT
GCAGCAGCCCCAGCTAAAAACATTACCTGTCAACATCCAGGGTGTGGAAA
AGTGTTTCGAGATAATTCGGCAATGAGAAAACATCTTCATACACATGGGC
CAAGAGTTCATGTTTGCGCAGAATGTGGAAAGGCCTTTGTAGAGAGCTCC
AAATTGAAACGTCACCAGTTGGTACACACAGGAGAAAAGCCTTTCCAGTG
TACTTTCGAAGGCTGTGGTAAACGATTCAGTTTAGATTTCAATCTACGTA
CTCATGTTCGAATACATACTGGCGACAAACCGTACGTTTGTCCTTTTGAT
TCATGCAACAAACGATTTGCACAATCTACAAACTTAAAATCACACATATT
GACTCATGCTAAATCCAATACAAATTCCAAAGGTGCTAACAATGCTAGTA
AACATCAACCGTCTATCGAGGAGAGCATACCTTTAGAATCTCAATTCTCT
TCTTCAATCACCAATGAAGATGAAGATGAAGATGAAGATCTTGGTGATGA
AGATCTGGTGATTCAAGAAGAATGAGAGAATGATATGATGCTTTTGAAAT
AATTCTGCATTCATAATAGAATATTGGCACAAGGAAATGGAGAAAGTTTT
AGAGGAGTGTTTTTATATGCTTTTAGAATAGATTCTGCATTCATAATAGA
ATATTGACCAAGAAAATGGAGAAAGTTTTGTGTATTTGTCGAATTTGAAT
GGAGGAAATTTTCAAATAGTATTTTGTGAAGATGCATTGATCGAATTTGA
CCAGGTATGATTGAAAAGAATGAAATACCATTTTTATTTGGAGAAGATTT
CAAGATATGGTCAATCTTGAATTTCGCTTTAACCAATTATTGATTTGGTA
TTGCTTGGTTATCGAACGTAGTGACAACAAAAGTTCAATTTCTACTACAA
TATGGTAACACTGGTATCGCATTTGATTTGACAATAGAAAGATACAAAAT
GATTGGTTACCCGTTATAGATATCTAATGGAAATGTAAACATCGATGGAA
AATCCTGAAGCCTGGTATCCCTCCATGTTCTTAATATTTTGTAGAACAAG
AGGATTTCTTTGAAGAAAGCAGAACTGTAATTGAAACACATGTTTTAAAA
TCTTGGTCAAAGTTAAATCGTGGTTGCTTCATTTTGAGATCTATTTTTAC
TTTGTCCCATTATTAATTTAATTAATTTTTTCATTATATTTTTTTGCGTT
TTTTTTCCCAAGAATTAAAACTATATGAAATTATTATCATCTTTGCATAT
TATTTCAGTCATTATTTTACGCTTTCAAATTTCGTCTTATTTGATGTACA
TATTTATTAATTTATTTTGCAAATTTATTTTTGTCTTTGCAACATCGAGC
TTTTCCGTCCCCTCCCTGTTGAAGATATCTACTTTTTTAATTCAACAGCC
CCTGGATGTCTTGCTTAAAAATAAAGTGCCCCCCCCCCCTGGATATCCTG
GATGTCCAAGTAGATAGAAGGCATGAGGATATCCAGTCATTTTGGCCTGT
ACTTTATATACTGGATGTCTGATATCCTCAAGATGTGTTTTTTTACCAAA
ACTATATTTCAAACGTCCATCTTCGTTTAGCGAATGGATACCAAAAGAac
gttgttttaatgttttaatgaaGTCAAAAATTACAATGATTGTACGTCAA
TATTTGAGTTTTTCTCAActgaaaaatgatgattttgaccACATCTGCTA
acggacaagctggagtttttacaagctcttatttgatttggttggtcgtt
aacctgtaataaaacaattttattactttttctaaagaacgcgtcatctc
tgttacttttaatgaccaattattgaagtattttataaaaactccagaac
aTCCCTCTGCTAAGTgtgattttattttcaggttCTCAATTTTCCT Run BLAST on NCBI protein sequence of TCONS_00052154-protein >TCONS_00052154-protein ID=TCONS_00052154-protein|Name=TCONS_00052154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MAELLLVEETLQSNMLFMEGDEEIIGEEEILSTGPLIALQPSSVDHLIDP
NIEVIEEVIDQSYVDDVPVIAQEQEISTDVQPQQQPNNKKRKLKGSKPNF
LKKSKGADGEEGTSEIDVPRKWERKKIQIKTLEGEFSVTVWASEDKTEEQ
DNPEETIEEIQSSIIVEEQKEPEHVEQIEQHQDQKQVEKKKEKPASKVRK
TSESRNKSSDGPKKSKKSSKPKDAAAPAKNITCQHPGCGKVFRDNSAMRK
HLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS
LDFNLRTHVRIHTGDKPYVCPFDSCNKRFAQSTNLKSHILTHAKSNTNSK
GANNASKHQPSIEESIPLESQFSSSITNEDEDEDEDLGDEDLVIQEE Run BLAST on NCBI transcript from alignment at scaffold_211:117450..125951+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052154 ID=TCONS_00052154|Name=TCONS_00052154|organism=Clytia hemisphaerica|type=transcript|length=8502bp|location=Sequence derived from alignment at scaffold_211:117450..125951+ (Clytia hemisphaerica)
GGTCCTGATTTTAGCTACATATTGCCTAACACCtaatattcttcaaaaag
aaCGGCGCGCGGGAAGATCACCGTGGCGATTTCTATAAATTGTTCGAAAC
GTGACCAGTTTGCTCTGAAGTAGCAATAGCTTTAGTCTAGTTTTCTGAAA
ACATGGCGCACAAGCAGTGCGAAACGAAAAGATGGCTGAACTGTTGCTGG
TCGAAGAAACTCTTCAAAGTAACATGCTTTTCATGGAAGGAGACGAAGAG
ATAATTGGAGAAGAGGAGATTTTATCAACAGGACCTTTAATTGCTCTTCA
GCCATCAAGTGTAGATCATTTGATTGACCCAAATATAGAGGTAATCGAAG
AAGTTATTGACCAATCTTATGTTGATGATGTTCCGGTTATTGCACAAGAA
CAAGAGATTTCAACAGATGTACAGCCTCAGCAACAACCAAACAATAAGAA
AAGAAAGCTTAAAGGTAGTAAACCAAATTTCTTAAAGAAGTCTAAGGGAG
CTGATGGCGAAGAAGGAACAAGTGAAATTGATGTTCCCAGAAAGTGGGAG
CGGAAGAAAATTCAAATCAAGACACTAGAAGGAGAATTTTCTGTTACAGT
TTGGGCATCAGGTataatgttgtttttattgcaGTAATTCAACAAATAGT
CTTGTTCTAAAACTCTAAATAGAAGTGCATCTAGCAGTATAGCCCTAACT
CTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcacagcgaaaggtttg
tttttattttagtttgtatctttgaaagaccccatcggctttaggctggg
ctgtcggctttaggacctctcacggtactgTATGATTTTTAGGACCTTCC
CCTGGCACTCTGGTCTGGTCCCCCGGAGCAAAAAGTGCTGTTTTTTCCTT
GCTCTGGAACACCAGATGATTCTGGAGCACTTCAACAAACCACAATTTTT
GGCGACTGGTCGGCACCAGAACTCCAGAACACCGGAACTCCGGAacggtt
ggcagacgatatcatactccaggatgcaagtgaaatttttcaatccgcgg
acctagacgggggtttggttattatcagttagggttagggttggagctcg
agagtcacaatataaggccgaaggccttcttaggggcattcgtaCCCTGT
GACTTACCTTAGGATCCCGTagagggatccttgtaggggcaccggtaggg
ttgggagctttcttaattaaggtctgtaaattacacgctataagtatttg
tgaatgacggCTTTCTGGTCTGTCTCGTTGGCGTaagcggttaggcattg
ggtAGTGCCATTGAAATTCCAAAACTTTGAAAGTTTCTCTTTGTCTTTTT
AAGACATCCTTGATGACATTCTCACAcagtttcaaagtttttttcatgtt
ttgatgaAACCCAGATGGGgtgctgaaagtttgaatttcttAAGAGAGGG
GTTGCCAGTTAGAGGGGGGGGGTCACTTCCTACTTCATAAAATTATgtac
aaattcaaaattgtttcttttcaacaaaaatatcaCGCATCTCTATAAAA
TTGCCTTTAGAGTGATGGGTCGAAACCATTGCATAAAGGGGGTCGAACTG
AAACTTCTATATAATTTCCTATGGGGaggaatcaaaatttcaaatgtatT
TCCTAAGGGTTCATACGGGTTCTCCCTTCCTAATAGAGTGGGGGGTTATA
TCAATGTATGACAAGGTTTCCACCAAAACTAACCAAAGgcaaatagaatt
tctattgcACTAATTTCCTAATTTTGCACTGATTTTTTGCCTGACCACTT
TTCTGTCCACCCTGTATGGCTCATGTCATATGTCTAAAAGATGTAGAAGT
TATTTCTTATATCTATGTGCCTTTGAATATTTGTTTTTCACGATGTCTGC
TAGTAGTAGTAGTATCTTACAAAACTTATCTGAGAGCCATGTCAACTGAG
Tatccaaaaaccttgaaaagtgccaaaatgtttaccaaaaaaccttgaaa
aaacactttaaaatgaccaaaaaaccttgaaaactttgaaaatcctgaaa
aaaaaaccgTAGACACCCTGTCAAAATAGACAAAGATCGTTTATGACCCC
TGTCTCAGATGAGGCTTTCAGGCTTTATCTAAAGATAGAGAACTAAAACA
AGCTTGACCCACTAAACTATATATTTAGCACCAGACTCTCTGACAATCTG
AGAAATTATTTGCCCGGGAAGAGCAGCAGATTTCAGCGAAATGCTGCTTT
TTGCTCTGAAAGTGTATGGTGGAAATGGTCTGAAATGGTGcttgttttca
aacttaaacatcaattcatttgaaatattttctttatttggattattgaa
aggttaaaggtttgttttatttttattttttgatgatagCTTCACTCAAT
CACTTACAATgagcttttgaaatttgtttattttgtattctGCTTGCTCT
CGCATGATGCCGCCTTTATGGAGTTTTTTTTGGCGTCTGCTAAATGCGAT
TTCGTGCACTTTCGCTCACTGTGCACacacgtattttttttaaatcagcc
GACTCATGGTAGTTTCAATATTTCGACCAGTGATGCTTTCGAATATAgca
aaaatacaaagttaaaaaaaaaaatggtagagtaatTTGGGAGCTGaact
gcgtagttcatttgtttttaaattttgctgctttaatTGGTCTGTCATTT
GATGGcttgcaagtttccctccactgatgcaagttatagAACTTCATATA
GAACTTAGCTACAGCAGATGATTTTGAttgaagttgttggaatgtttaca
aaggctctTGACAGGCTTTTTTATACTGTCAATCTGGCTTTTTTTAAGCC
ATTACCTTTGGGTACTTTGCCAACCTCCCCTACTGAAAGcctatttattt
ttgaaaaaagtttccttGGGATAACAGTTTAATGGTAAATTCTATTTatt
cttataatttttataGAAGACAAAACTGAGGAACAAGATAACCCAGAAGA
AACGATAGAAGAAATTCAATCGTCCATCATTGTTGAAGAACAAAAGGAAC
CCGAACACGTGGAACAAATAGAACAACATCAAGACCAGAAAcaagttgaa
aagaaaaaagagaaaccAGCGAGCAAAGTTAGAAAAACAAGCGAAAGTAG
AAATAAATCTTCTGATGGACCAAAgtaagtttcttcttttttactcTATA
ACTTGGTTAGCAAAATCTTCAGAATTGTGTGGAATATTTCTTTCAAAGTA
ACAGGAAGAGAATTTGGATCACTTCGAAAAAAATTACCTATGTTAGAGAC
CTTTTCAAATTTGGTAAATTGTCTTCTTTTTAAAAGTCAATAATATCTTG
CAAAATTTATTTGTATATGTCTGATGATTGGATCGTTGTAAGGCATGAAA
CTTGaagttattttattttatttttaacttCGAAATCTTGAACTAAATTC
ATCTTGAGAAGTTGGTTAATAGTGATAAGGTTTGCTCTAAATTCTGTTTT
CAAAGGCTtctgaaaaatattccaaaagaaGGGAAGATTTCTTGCCAACA
TACCTTAAACAATGTGCTGTGTTCTTTTGCCTATTGAAAATTATTGGCAA
TTATTTAGCGTTTGATTTTTAGTAAAGGGCAAAATGATggatttacagat
ttttcagGTTATTTCAAGAACAACTTCTGGCAGCTCTCACaaactttcac
tacttttttatttaatattatttttattaaatacatctaatttgattgaa
ttaagctaaaaagtctttatcttttttatttcaggaaaagcAAAAAGTCA
TCTAAACCTAAGGATGCAGCAGCCCCAGCTAAAAACATTACCTGTCAACA
TCCAGTAAGttgttattgttttcatttttatcaacaGAGTACCAAATTTT
AAGCTATTCATAATTCACTCTATGCTCAACTAGCGCTTAGCTGCCGAAAT
TGACAGCGATATTGAGTTGCAAGAAAATGTACATTTAATTCATGATCTTA
CTGCCTAGATCGGCAGACGACTagaaatcctaaaaaaaaatacaaaacaa
gtCTCATACCATAAAACTCTGCTCGTGGAGCTATGGTGAATAAGATGGAA
ATGTAAACACCTACATCATATTTTGATAGAAGTCTTTttatttgttattc
ttgatttcAGGGGTGTGGAAAAGTGTTTCGAGATAATTCGGCAATGAGAA
AACATCTTCATACACATGGGCCAAGAGTTCATGTTTGCGCAGAATGTGGA
AAGGTAAAAATAATCTCCttttatatcaattttggcCGGGTTGGTCAGTT
GGTAGGACATTCCCTGTACAATCCAAGTGTTGTGGGTTTGATCCCCGGTT
ACCGCCAACTCATtgaatgagtagcttagattgggtaatttGATCTAGGC
GATAAGTTAcagggagctgagagtaggtgtgtcGCGCCACCTCAGCATTT
GACCTCCCGGCCCCAAACCTCCCTCCTTTACTTTACTTATTCCAATCGTT
TCAAACTTTACTGAAAGTTTTCCAAATACAATTATTTCAGAATTTACAAT
TTTAGTGTTCATCTCATTCGggatcttttgttttaaattttgcaaCTCGA
CTGTCAAATTATCAGAATTTTTCCTTGAATATTTGAATATCTGTAATATC
TACAATACAATATGTGTAACTTTTTTTACCAGGCCTTTGTAGAGAGCTCC
AAATTGAAACGTCACCAGTTGGTACACACAGGAGAAAAGCCTTTCCAGGT
AATAATATTTATTTTTTAGTTAACTTAACCTCTACTTTACTTATCTATTC
TACCTCTAAGCTCGAAATTGTGGATTTCCTCGTTTTGAGTGCTAAAACAT
AGGGATGTGTAACACCAGCACACTTAGCAGAATAAACAATTGCTTTTCCA
TAACTTTTTCATTTTGTGTAATTTGAACGAACAACAAAAATATTTAAATG
AGAGCCTAATGAATGAAAACCTTAGTACAAACAAAAATGTTTCGTTTTCT
GCTTTCAGGCTGGAAAGAAACTTTCAGATATTTAGATGGGTAGATGGGGT
TTAGATTCAGTTTGTCAGTTGTTTTGGAGATTCAAAATATCCGAAAACAA
CAAATGCTCAAAAACTCATAGAAGGCATATTTCATAGGGCAAAACTTTAA
CCGCTCTTTATAAGACTGTTATTTAAATTGTTGAATTTTTATAATTTCTT
TTAGTGTACTTTCGAAGGCTGTGGTAAACGATTCAGTTTAGATTTCAATC
TACGTACTCATGTTCGAATACATACTGGCGACAAACCGTACGTTTGTCCT
TTTGATTCATGCAACAAACGATTTGCACAATCTACAAACTTAAAATCACA
CATATTGACTCATGCTAAATCCAATACAAATTCCAAAGGTGCTAACAATG
CTAGTAAACATCAACCGTCTATCGAGGAGAGCATACCTTTAGAATCTCAA
TTCTCTTCTTCAATCACCAATGAAGATGAAGATGAAGATGAAGATCTTGG
TGATGAAGATCTGGTGATTCAAGAAGAATGAGAGAATGATATGATGCTTT
TGAAATAATTCTGCATTCATAATAGAATATTGGCACAAGGAAATGGAGAA
AGTTTTAGAGGAGTGTTTTTATATGCTTTTAGAATAGATTCTGCATTCAT
AATAGAATATTGACCAAGAAAATGGAGAAAGTTTTGTGTATTTGTCGAAT
TTGAATGGAGGAAATTTTCAAATAGTATTTTGTGAAGATGCATTGATCGA
ATTTGACCAGGTATGATTGAAAAGAATGAAATACCATTTTTATTTGGAGA
AGATTTCAAGATATGGTCAATCTTGAATTTCGCTTTAACCAATTATTGAT
TTGGTATTGCTTGGTTATCGAACGTAGTGACAACAAAAGTTCAATTTCTA
CTACAATATGGTAACACTGGTATCGCATTTGATTTGACAATAGAAAGATA
CAAAATGATTGGTTACCCGTTATAGATATCTAATGGAAATGTAAACATCG
ATGGAAAATCCTGAAGCCTGGTATCCCTCCATGTTCTTAATATTTTGTAG
AACAAGAGGATTTCTTTGAAGAAAGCAGAACTGTAATTGAAACACATGTT
TTAAAATCTTGGTCAAAGTTAAATCGTGGTTGCTTCATTTTGAGATCTAT
TTTTACTTTGTCCCATTATTAATTTAATTAATTTTTTCATTATATTTTTT
TGCGTTTTTTTTCCCAAGAATTAAAACTATATGAAATTATTATCATCTTT
GCATATTATTTCAGTCATTATTTTACGCTTTCAAATTTCGTCTTATTTGA
TGTACATATTTATTAATTTATTTTGCAAATTTATTTTTGTCTTTGCAACA
TCGAGCTTTTCCGTCCCCTCCCTGTTGAAGATATCTACTTTTTTAATTCA
ACAGCCCCTGGATGTCTTGCTTAAAAATAAAGTGCCCCCCCCCCCTGGAT
ATCCTGGATGTCCAAGTAGATAGAAGGCATGAGGATATCCAGTCATTTTG
GCCTGTACTTTATATACTGGATGTCTGATATCCTCAAGATGTGTTTTTTT
ACCAAAACTATATTTCAAACGTCCATCTTCGTTTAGCGAATGGATACCAA
AAGAacgttgttttaatgttttaatgaaGTCAAAAATTACAATGATTGTA
CGTCAATATTTGAGTTTTTCTCAActgaaaaatgatgattttgaccACAT
CTGCTAacggacaagctggagtttttacaagctcttatttgatttggttg
gtcgttaacctgtaataaaacaattttattactttttctaaagaacgcgt
catctctgttacttttaatgaccaattattgaagtattttataaaaactc
cagaacaTCCCTCTGCTAAGTgtgattttattttcaggttCTCAATTTTC
CT Coding sequence (CDS) from alignment at scaffold_211:117450..125951+ >TCONS_00052154 ID=TCONS_00052154|Name=TCONS_00052154|organism=Clytia hemisphaerica|type=CDS|length=7164bp|location=Sequence derived from alignment at scaffold_211:117450..125951+ (Clytia hemisphaerica)
ATGGCTGAACTGTTGCTGGTCGAAGAAACTCTTCAAAGTAACATGCTTTT
CATGGAAGGAGACGAAGAGATAATTGGAGAAGAGGAGATTTTATCAACAG
GACCTTTAATTGCTCTTCAGCCATCAAGTGTAGATCATTTGATTGACCCA
AATATAGAGGTAATCGAAGAAGTTATTGACCAATCTTATGTTGATGATGT
TCCGGTTATTGCACAAGAACAAGAGATTTCAACAGATGTACAGCCTCAGC
AACAACCAAACAATAAGAAAAGAAAGCTTAAAGGTAGTAAACCAAATTTC
TTAAAGAAGTCTAAGGGAGCTGATGGCGAAGAAGGAACAAGTGAAATTGA
TGTTCCCAGAAAGTGGGAGCGGAAGAAAATTCAAATCAAGACACTAGAAG
GAGAATTTTCTGTTACAGTTTGGGCATCAGAAGACAAAACTGAGGAACAA
GATAACCCAGAAGAAACGATAGAAGAAATTCAATCGTCCATCATTGTTGA
AGAACAAAAGGAACCCGAACACGTGGAACAAATAGAACAACATCAAGACC
AGAAAcaagttgaaaagaaaaaagagaaaccAGCGAGCAAAGTTAGAAAA
ACAAGCGAAAGTAGAAATAAATCTTCTGATGGACCAAAgaaaagcAAAAA
GTCATCTAAACCTAAGGATGCAGCAGCCCCAGCTAAAAACATTACCTGTC
AACATCCAGGGTGTGGAAAAGTGTTTCGAGATAATTCGGCAATGAGAAAA
CATCTTCATACACATGGGCCAAGAGTTCATGTTTGCGCAGAATGTGGAAA
GGCCTTTGTAGAGAGCTCCAAATTGAAACGTCACCAGTTGGTACACACAG
GAGAAAAGCCTTTCCAGTGTACTTTCGAAGGCTGTGGTAAACGATTCAGT
TTAGATTTCAATCTACGTACTCATGTTCGAATACATACTGGCGACAAACC
GTACGTTTGTCCTTTTGATTCATGCAACAAACGATTTGCACAATCTACAA
ACTTAAAATCACACATATTGACTCATGCTAAATCCAATACAAATTCCAAA
GGTGCTAACAATGCTAGTAAACATCAACCGTCTATCGAGGAGAGCATACC
TTTAGAATCTCAATTCTCTTCTTCAATCACCAATGAAGATGAAGATGAAG
ATGAAGATCTTGGTGATGAAGATCTGGTGATTCAAGAAGAATGAATGGCT
GAACTGTTGCTGGTCGAAGAAACTCTTCAAAGTAACATGCTTTTCATGGA
AGGAGACGAAGAGATAATTGGAGAAGAGGAGATTTTATCAACAGGACCTT
TAATTGCTCTTCAGCCATCAAGTGTAGATCATTTGATTGACCCAAATATA
GAGGTAATCGAAGAAGTTATTGACCAATCTTATGTTGATGATGTTCCGGT
TATTGCACAAGAACAAGAGATTTCAACAGATGTACAGCCTCAGCAACAAC
CAAACAATAAGAAAAGAAAGCTTAAAGGTAGTAAACCAAATTTCTTAAAG
AAGTCTAAGGGAGCTGATGGCGAAGAAGGAACAAGTGAAATTGATGTTCC
CAGAAAGTGGGAGCGGAAGAAAATTCAAATCAAGACACTAGAAGGAGAAT
TTTCTGTTACAGTTTGGGCATCAGAAGACAAAACTGAGGAACAAGATAAC
CCAGAAGAAACGATAGAAGAAATTCAATCGTCCATCATTGTTGAAGAACA
AAAGGAACCCGAACACGTGGAACAAATAGAACAACATCAAGACCAGAAAc
aagttgaaaagaaaaaagagaaaccAGCGAGCAAAGTTAGAAAAACAAGC
GAAAGTAGAAATAAATCTTCTGATGGACCAAAgaaaagcAAAAAGTCATC
TAAACCTAAGGATGCAGCAGCCCCAGCTAAAAACATTACCTGTCAACATC
CAGGGTGTGGAAAAGTGTTTCGAGATAATTCGGCAATGAGAAAACATCTT
CATACACATGGGCCAAGAGTTCATGTTTGCGCAGAATGTGGAAAGGCCTT
TGTAGAGAGCTCCAAATTGAAACGTCACCAGTTGGTACACACAGGAGAAA
AGCCTTTCCAGTGTACTTTCGAAGGCTGTGGTAAACGATTCAGTTTAGAT
TTCAATCTACGTACTCATGTTCGAATACATACTGGCGACAAACCGTACGT
TTGTCCTTTTGATTCATGCAACAAACGATTTGCACAATCTACAAACTTAA
AATCACACATATTGACTCATGCTAAATCCAATACAAATTCCAAAGGTGCT
AACAATGCTAGTAAACATCAACCGTCTATCGAGGAGAGCATACCTTTAGA
ATCTCAATTCTCTTCTTCAATCACCAATGAAGATGAAGATGAAGATGAAG
ATCTTGGTGATGAAGATCTGGTGATTCAAGAAGAATGAATGGCTGAACTG
TTGCTGGTCGAAGAAACTCTTCAAAGTAACATGCTTTTCATGGAAGGAGA
CGAAGAGATAATTGGAGAAGAGGAGATTTTATCAACAGGACCTTTAATTG
CTCTTCAGCCATCAAGTGTAGATCATTTGATTGACCCAAATATAGAGGTA
ATCGAAGAAGTTATTGACCAATCTTATGTTGATGATGTTCCGGTTATTGC
ACAAGAACAAGAGATTTCAACAGATGTACAGCCTCAGCAACAACCAAACA
ATAAGAAAAGAAAGCTTAAAGGTAGTAAACCAAATTTCTTAAAGAAGTCT
AAGGGAGCTGATGGCGAAGAAGGAACAAGTGAAATTGATGTTCCCAGAAA
GTGGGAGCGGAAGAAAATTCAAATCAAGACACTAGAAGGAGAATTTTCTG
TTACAGTTTGGGCATCAGAAGACAAAACTGAGGAACAAGATAACCCAGAA
GAAACGATAGAAGAAATTCAATCGTCCATCATTGTTGAAGAACAAAAGGA
ACCCGAACACGTGGAACAAATAGAACAACATCAAGACCAGAAAcaagttg
aaaagaaaaaagagaaaccAGCGAGCAAAGTTAGAAAAACAAGCGAAAGT
AGAAATAAATCTTCTGATGGACCAAAgaaaagcAAAAAGTCATCTAAACC
TAAGGATGCAGCAGCCCCAGCTAAAAACATTACCTGTCAACATCCAGGGT
GTGGAAAAGTGTTTCGAGATAATTCGGCAATGAGAAAACATCTTCATACA
CATGGGCCAAGAGTTCATGTTTGCGCAGAATGTGGAAAGGCCTTTGTAGA
GAGCTCCAAATTGAAACGTCACCAGTTGGTACACACAGGAGAAAAGCCTT
TCCAGTGTACTTTCGAAGGCTGTGGTAAACGATTCAGTTTAGATTTCAAT
CTACGTACTCATGTTCGAATACATACTGGCGACAAACCGTACGTTTGTCC
TTTTGATTCATGCAACAAACGATTTGCACAATCTACAAACTTAAAATCAC
ACATATTGACTCATGCTAAATCCAATACAAATTCCAAAGGTGCTAACAAT
GCTAGTAAACATCAACCGTCTATCGAGGAGAGCATACCTTTAGAATCTCA
ATTCTCTTCTTCAATCACCAATGAAGATGAAGATGAAGATGAAGATCTTG
GTGATGAAGATCTGGTGATTCAAGAAGAATGAATGGCTGAACTGTTGCTG
GTCGAAGAAACTCTTCAAAGTAACATGCTTTTCATGGAAGGAGACGAAGA
GATAATTGGAGAAGAGGAGATTTTATCAACAGGACCTTTAATTGCTCTTC
AGCCATCAAGTGTAGATCATTTGATTGACCCAAATATAGAGGTAATCGAA
GAAGTTATTGACCAATCTTATGTTGATGATGTTCCGGTTATTGCACAAGA
ACAAGAGATTTCAACAGATGTACAGCCTCAGCAACAACCAAACAATAAGA
AAAGAAAGCTTAAAGGTAGTAAACCAAATTTCTTAAAGAAGTCTAAGGGA
GCTGATGGCGAAGAAGGAACAAGTGAAATTGATGTTCCCAGAAAGTGGGA
GCGGAAGAAAATTCAAATCAAGACACTAGAAGGAGAATTTTCTGTTACAG
TTTGGGCATCAGAAGACAAAACTGAGGAACAAGATAACCCAGAAGAAACG
ATAGAAGAAATTCAATCGTCCATCATTGTTGAAGAACAAAAGGAACCCGA
ACACGTGGAACAAATAGAACAACATCAAGACCAGAAAcaagttgaaaaga
aaaaagagaaaccAGCGAGCAAAGTTAGAAAAACAAGCGAAAGTAGAAAT
AAATCTTCTGATGGACCAAAgaaaagcAAAAAGTCATCTAAACCTAAGGA
TGCAGCAGCCCCAGCTAAAAACATTACCTGTCAACATCCAGGGTGTGGAA
AAGTGTTTCGAGATAATTCGGCAATGAGAAAACATCTTCATACACATGGG
CCAAGAGTTCATGTTTGCGCAGAATGTGGAAAGGCCTTTGTAGAGAGCTC
CAAATTGAAACGTCACCAGTTGGTACACACAGGAGAAAAGCCTTTCCAGT
GTACTTTCGAAGGCTGTGGTAAACGATTCAGTTTAGATTTCAATCTACGT
ACTCATGTTCGAATACATACTGGCGACAAACCGTACGTTTGTCCTTTTGA
TTCATGCAACAAACGATTTGCACAATCTACAAACTTAAAATCACACATAT
TGACTCATGCTAAATCCAATACAAATTCCAAAGGTGCTAACAATGCTAGT
AAACATCAACCGTCTATCGAGGAGAGCATACCTTTAGAATCTCAATTCTC
TTCTTCAATCACCAATGAAGATGAAGATGAAGATGAAGATCTTGGTGATG
AAGATCTGGTGATTCAAGAAGAATGAATGGCTGAACTGTTGCTGGTCGAA
GAAACTCTTCAAAGTAACATGCTTTTCATGGAAGGAGACGAAGAGATAAT
TGGAGAAGAGGAGATTTTATCAACAGGACCTTTAATTGCTCTTCAGCCAT
CAAGTGTAGATCATTTGATTGACCCAAATATAGAGGTAATCGAAGAAGTT
ATTGACCAATCTTATGTTGATGATGTTCCGGTTATTGCACAAGAACAAGA
GATTTCAACAGATGTACAGCCTCAGCAACAACCAAACAATAAGAAAAGAA
AGCTTAAAGGTAGTAAACCAAATTTCTTAAAGAAGTCTAAGGGAGCTGAT
GGCGAAGAAGGAACAAGTGAAATTGATGTTCCCAGAAAGTGGGAGCGGAA
GAAAATTCAAATCAAGACACTAGAAGGAGAATTTTCTGTTACAGTTTGGG
CATCAGAAGACAAAACTGAGGAACAAGATAACCCAGAAGAAACGATAGAA
GAAATTCAATCGTCCATCATTGTTGAAGAACAAAAGGAACCCGAACACGT
GGAACAAATAGAACAACATCAAGACCAGAAAcaagttgaaaagaaaaaag
agaaaccAGCGAGCAAAGTTAGAAAAACAAGCGAAAGTAGAAATAAATCT
TCTGATGGACCAAAgaaaagcAAAAAGTCATCTAAACCTAAGGATGCAGC
AGCCCCAGCTAAAAACATTACCTGTCAACATCCAGGGTGTGGAAAAGTGT
TTCGAGATAATTCGGCAATGAGAAAACATCTTCATACACATGGGCCAAGA
GTTCATGTTTGCGCAGAATGTGGAAAGGCCTTTGTAGAGAGCTCCAAATT
GAAACGTCACCAGTTGGTACACACAGGAGAAAAGCCTTTCCAGTGTACTT
TCGAAGGCTGTGGTAAACGATTCAGTTTAGATTTCAATCTACGTACTCAT
GTTCGAATACATACTGGCGACAAACCGTACGTTTGTCCTTTTGATTCATG
CAACAAACGATTTGCACAATCTACAAACTTAAAATCACACATATTGACTC
ATGCTAAATCCAATACAAATTCCAAAGGTGCTAACAATGCTAGTAAACAT
CAACCGTCTATCGAGGAGAGCATACCTTTAGAATCTCAATTCTCTTCTTC
AATCACCAATGAAGATGAAGATGAAGATGAAGATCTTGGTGATGAAGATC
TGGTGATTCAAGAAGAATGAATGGCTGAACTGTTGCTGGTCGAAGAAACT
CTTCAAAGTAACATGCTTTTCATGGAAGGAGACGAAGAGATAATTGGAGA
AGAGGAGATTTTATCAACAGGACCTTTAATTGCTCTTCAGCCATCAAGTG
TAGATCATTTGATTGACCCAAATATAGAGGTAATCGAAGAAGTTATTGAC
CAATCTTATGTTGATGATGTTCCGGTTATTGCACAAGAACAAGAGATTTC
AACAGATGTACAGCCTCAGCAACAACCAAACAATAAGAAAAGAAAGCTTA
AAGGTAGTAAACCAAATTTCTTAAAGAAGTCTAAGGGAGCTGATGGCGAA
GAAGGAACAAGTGAAATTGATGTTCCCAGAAAGTGGGAGCGGAAGAAAAT
TCAAATCAAGACACTAGAAGGAGAATTTTCTGTTACAGTTTGGGCATCAG
AAGACAAAACTGAGGAACAAGATAACCCAGAAGAAACGATAGAAGAAATT
CAATCGTCCATCATTGTTGAAGAACAAAAGGAACCCGAACACGTGGAACA
AATAGAACAACATCAAGACCAGAAAcaagttgaaaagaaaaaagagaaac
cAGCGAGCAAAGTTAGAAAAACAAGCGAAAGTAGAAATAAATCTTCTGAT
GGACCAAAgaaaagcAAAAAGTCATCTAAACCTAAGGATGCAGCAGCCCC
AGCTAAAAACATTACCTGTCAACATCCAGGGTGTGGAAAAGTGTTTCGAG
ATAATTCGGCAATGAGAAAACATCTTCATACACATGGGCCAAGAGTTCAT
GTTTGCGCAGAATGTGGAAAGGCCTTTGTAGAGAGCTCCAAATTGAAACG
TCACCAGTTGGTACACACAGGAGAAAAGCCTTTCCAGTGTACTTTCGAAG
GCTGTGGTAAACGATTCAGTTTAGATTTCAATCTACGTACTCATGTTCGA
ATACATACTGGCGACAAACCGTACGTTTGTCCTTTTGATTCATGCAACAA
ACGATTTGCACAATCTACAAACTTAAAATCACACATATTGACTCATGCTA
AATCCAATACAAATTCCAAAGGTGCTAACAATGCTAGTAAACATCAACCG
TCTATCGAGGAGAGCATACCTTTAGAATCTCAATTCTCTTCTTCAATCAC
CAATGAAGATGAAGATGAAGATGAAGATCTTGGTGATGAAGATCTGGTGA
TTCAAGAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052154-exon-scaffold_211-1491911889:117450..118060 | TCONS_00052154-exon-scaffold_211-1491911889:117450..118060 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1510915933:117450..118060 | TCONS_00052154-exon-scaffold_211-1510915933:117450..118060 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1575043694:117450..118060 | TCONS_00052154-exon-scaffold_211-1575043694:117450..118060 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1491911889:122016..122223 | TCONS_00052154-exon-scaffold_211-1491911889:122016..122223 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1510915933:122016..122223 | TCONS_00052154-exon-scaffold_211-1510915933:122016..122223 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1575043694:122016..122223 | TCONS_00052154-exon-scaffold_211-1575043694:122016..122223 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1491911889:122834..122903 | TCONS_00052154-exon-scaffold_211-1491911889:122834..122903 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1510915933:122834..122903 | TCONS_00052154-exon-scaffold_211-1510915933:122834..122903 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1575043694:122834..122903 | TCONS_00052154-exon-scaffold_211-1575043694:122834..122903 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1491911889:123210..123302 | TCONS_00052154-exon-scaffold_211-1491911889:123210..123302 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1510915933:123210..123302 | TCONS_00052154-exon-scaffold_211-1510915933:123210..123302 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1575043694:123210..123302 | TCONS_00052154-exon-scaffold_211-1575043694:123210..123302 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1491911889:123732..123797 | TCONS_00052154-exon-scaffold_211-1491911889:123732..123797 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1510915933:123732..123797 | TCONS_00052154-exon-scaffold_211-1510915933:123732..123797 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1575043694:123732..123797 | TCONS_00052154-exon-scaffold_211-1575043694:123732..123797 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1491911889:124254..125951 | TCONS_00052154-exon-scaffold_211-1491911889:124254..125951 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1510915933:124254..125951 | TCONS_00052154-exon-scaffold_211-1510915933:124254..125951 | Clytia hemisphaerica | exon |
| TCONS_00052154-exon-scaffold_211-1575043694:124254..125951 | TCONS_00052154-exon-scaffold_211-1575043694:124254..125951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_211 | supercontig | scaffold_211:117450..125951 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00052154 vs. Swiss-Prot (Human)
Match: TYY1 (Transcriptional repressor protein YY1 OS=Homo sapiens GN=YY1 PE=1 SV=2) HSP 1 Score: 242.276 bits (617), Expect = 1.142e-70 Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 2
Query: 869 NITCQHPGCGKVFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDKPYVCPFDSCNKRFAQSTNLKSHILTHAKSNTN 1225
I C H GC K+FRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD+PYVCPFD CNK+FAQSTNLKSHILTHAK+ N
Sbjct: 295 TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 413
The following BLAST results are available for this feature:
|
