TCONS_00052141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052141
Unique NameTCONS_00052141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052141 ID=TCONS_00052141|Name=TCONS_00052141|organism=Clytia hemisphaerica|type=transcript|length=261bp
CGATAACGAGTATATTTATTTTAGTTAAACTAATCAAATTTATCGtcaaa
ctaaaatgaaattcATCGTAGAAAATAAACACGCAGGGTAATATGAAAAC
TACGAAAAACAAATGTACTAAATATCTGAAAGgattttgaaaggaaaaga
attttggattttatttttatcaaggaaaacaaaaagaattagaAGACTCA
gaggaaaaacaaaaagaagagataaacaaacaagcaaataaTAGTGTGGG
ATCTGAGAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_210:248892..249152

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052141 ID=TCONS_00052141|Name=TCONS_00052141|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at scaffold_210:248892..249152 (Clytia hemisphaerica)
GCCTCTCAGATCCCACACTAttatttgcttgtttgtttatctcttctttt
tgtttttcctcTGAGTCTtctaattctttttgttttccttgataaaaata
aaatccaaaattcttttcctttcaaaatcCTTTCAGATATTTAGTACATT
TGTTTTTCGTAGTTTTCATATTACCCTGCGTGTTTATTTTCTACGATgaa
tttcattttagtttgaCGATAAATTTGATTAGTTTAACTAAAATAAATAT
ACTCGTTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033021XLOC_033021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052141-exon-scaffold_210-1491911889:248892..249152TCONS_00052141-exon-scaffold_210-1491911889:248892..249152Clytia hemisphaericaexon
TCONS_00052141-exon-scaffold_210-1510915933:248892..249152TCONS_00052141-exon-scaffold_210-1510915933:248892..249152Clytia hemisphaericaexon
TCONS_00052141-exon-scaffold_210-1575043694:248892..249152TCONS_00052141-exon-scaffold_210-1575043694:248892..249152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_210supercontigscaffold_210:248892..249152 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.63472	2.69982	0	9.90506	11.1815	16.0782	1.46872	4.72849	0	0.995091	16.4973	13.6667	3.12601	0	0	2.02217	0	0	0.886663	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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