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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052138 ID=TCONS_00052138|Name=TCONS_00052138|organism=Clytia hemisphaerica|type=transcript|length=1501bp
CtttaaatataaacaaagtAGCGAGGCGAGCGTCATATAGCTCAACAAGT
GGGGACTTGACACTAAGTCCGTTAACGCCCGAAAAGTTGTTGGTTGAAAG
ACTCCAATCAGCTCCAATAGGTGCTTTTTTGGAGGCTTGTGAAAACGTCG
GCTACGTTTGAATTCGAAGGCACATAATCGATTGCAATACGATTGTCATT
ATAACAGTCACATATGAAATGAAAACGAATATCTATGTGCTTTGATTTTG
GTCGGTTGACAGGATTCTTGACGAGAGCGATAGCACCTTGGTTGTCACAT
TGAATAATTGTTGATTTCTTGATCTCGTCGATAGCTGATTGGTTTGCGCT
TTTGATAATGGCAGGATTTGGTTCGTAGATTTCGCGTAGAATCGGTGTCA
GGGAAATGTTTTCTTGGCACGTGATCGACATTGCCATGTACTCGGCTTCA
CATGTGGTTAACGCCACCGATGGTTGTTTCTTTGATTTCCAGCTTATGAT
TGGGCCATGTTCATTCAGGCTTGTACAGTAACAAGTGATACTTCGATGAT
CGTCGGTAGATGAAGCCCAATCAGCATCACTAAAAGCATTTAATCTCAGT
CCCTTTTTGCTTTTGTGAAATTTCAGTTTATAGTCAACAGTTCCTTTGAC
ATAACAAAATACATGTTTGAGCATGATCCAATCACCAGGAGTTGGATTAG
AAAGATGTTGCGATAACTTGGTTATGCAGTAGCTGAGGTCTGGTCGGGTG
CACGTCATTGCATAAATAAGGCTGCCTACCATCTGCCGGTATAGTTTGGT
GTCTTCCTAGTTGGATTCACCTTGGTTGTCGTTGTAGGCATTCGGGTTGG
TTTCACAAGGAGTTTTTCTTGGTTTGCATTTCTCGAAATTAAACTTCTTG
AGCATGTTAGTAAGGTATCTTGATTGTGACATTGTGATTGAATCTGGGTT
GACTTCAAAATCGATACCAACAAAAGATGAGAGTTCACCCAGGTCCTTCA
TGTTGAACTTTGCGCTGAGTTGCTATTTGATCGATTTCATTGAGACTGCT
GAACTGGAGGCGATGATGATATCGTCAACCCATACTAGTAAAATGACTGT
TTCGGATTTCtcggttttgtagaataaacatGGGTCGGCAGATGACTGTT
TGAAATTAAGTTCACTTAGGAATTCTTGGAGAAGACAGTTCCAGTTCCGC
TTTGTTTCAATCCATAGAGCGATTTGTTAAGTTTCCACACTAGCTTCTCA
CCATTTACTTTGAATCCTTCAGGTTGTTCAACATAAACATCATATTCCAT
TGGTGCATCCATCTGGTGCATCACCCAATCATTCTGAATAGCTAATTGTG
TCAAGATTCTAACAGATTCCACCCTTGCTGTTGGTGAGAATGTCTCTGCA
TAATCAATACCTTATTTCTGGGTATagtatggaagccgagaagggacaAC
CCGAATTTTTGTAAGaaacccaaaatcttttttaaaaacccgaaatcttt
t Run BLAST on NCBI protein sequence of TCONS_00052138-protein >TCONS_00052138-protein ID=TCONS_00052138-protein|Name=TCONS_00052138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MVGSLIYAMTCTRPDLSYCITKLSQHLSNPTPGDWIMLKHVFCYVKGTVD
YKLKFHKSKKGLRLNAFSDADWASSTDDHRSITCYCTSLNEHGPIISWKS
KKQPSVALTTCEAEYMAMSITCQENISLTPILREIYEPNPAIIKSANQSA
IDEIKKSTIIQCDNQGAIALVKNPVNRPKSKHIDIRFHFICDCYNDNRIA
IDYVPSNSNVADVFTSLQKSTYWS Run BLAST on NCBI transcript from alignment at scaffold_210:39297..40797 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052138 ID=TCONS_00052138|Name=TCONS_00052138|organism=Clytia hemisphaerica|type=transcript|length=1501bp|location=Sequence derived from alignment at scaffold_210:39297..40797 (Clytia hemisphaerica)
aaaagatttcgggtttttaaaaaagattttgggtttCTTACAAAAATTCG
GGTtgtcccttctcggcttccatactATACCCAGAAATAAGGTATTGATT
ATGCAGAGACATTCTCACCAACAGCAAGGGTGGAATCTGTTAGAATCTTG
ACACAATTAGCTATTCAGAATGATTGGGTGATGCACCAGATGGATGCACC
AATGGAATATGATGTTTATGTTGAACAACCTGAAGGATTCAAAGTAAATG
GTGAGAAGCTAGTGTGGAAACTTAACAAATCGCTCTATGGATTGAAACAA
AGCGGAACTGGAACTGTCTTCTCCAAGAATTCCTAAGTGAACTTAATTTC
AAACAGTCATCTGCCGACCCatgtttattctacaaaaccgaGAAATCCGA
AACAGTCATTTTACTAGTATGGGTTGACGATATCATCATCGCCTCCAGTT
CAGCAGTCTCAATGAAATCGATCAAATAGCAACTCAGCGCAAAGTTCAAC
ATGAAGGACCTGGGTGAACTCTCATCTTTTGTTGGTATCGATTTTGAAGT
CAACCCAGATTCAATCACAATGTCACAATCAAGATACCTTACTAACATGC
TCAAGAAGTTTAATTTCGAGAAATGCAAACCAAGAAAAACTCCTTGTGAA
ACCAACCCGAATGCCTACAACGACAACCAAGGTGAATCCAACTAGGAAGA
CACCAAACTATACCGGCAGATGGTAGGCAGCCTTATTTATGCAATGACGT
GCACCCGACCAGACCTCAGCTACTGCATAACCAAGTTATCGCAACATCTT
TCTAATCCAACTCCTGGTGATTGGATCATGCTCAAACATGTATTTTGTTA
TGTCAAAGGAACTGTTGACTATAAACTGAAATTTCACAAAAGCAAAAAGG
GACTGAGATTAAATGCTTTTAGTGATGCTGATTGGGCTTCATCTACCGAC
GATCATCGAAGTATCACTTGTTACTGTACAAGCCTGAATGAACATGGCCC
AATCATAAGCTGGAAATCAAAGAAACAACCATCGGTGGCGTTAACCACAT
GTGAAGCCGAGTACATGGCAATGTCGATCACGTGCCAAGAAAACATTTCC
CTGACACCGATTCTACGCGAAATCTACGAACCAAATCCTGCCATTATCAA
AAGCGCAAACCAATCAGCTATCGACGAGATCAAGAAATCAACAATTATTC
AATGTGACAACCAAGGTGCTATCGCTCTCGTCAAGAATCCTGTCAACCGA
CCAAAATCAAAGCACATAGATATTCGTTTTCATTTCATATGTGACTGTTA
TAATGACAATCGTATTGCAATCGATTATGTGCCTTCGAATTCAAACGTAG
CCGACGTTTTCACAAGCCTCCAAAAAAGCACCTATTGGAGCTGATTGGAG
TCTTTCAACCAACAACTTTTCGGGCGTTAACGGACTTAGTGTCAAGTCCC
CACTTGTTGAGCTATATGACGCTCGCCTCGCTactttgtttatatttaaa
G Coding sequence (CDS) from alignment at scaffold_210:39297..40797 >TCONS_00052138 ID=TCONS_00052138|Name=TCONS_00052138|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_210:39297..40797 (Clytia hemisphaerica)
ATGGTAGGCAGCCTTATTTATGCAATGACGTGCACCCGACCAGACCTCAG
CTACTGCATAACCAAGTTATCGCAACATCTTTCTAATCCAACTCCTGGTG
ATTGGATCATGCTCAAACATGTATTTTGTTATGTCAAAGGAACTGTTGAC
TATAAACTGAAATTTCACAAAAGCAAAAAGGGACTGAGATTAAATGCTTT
TAGTGATGCTGATTGGGCTTCATCTACCGACGATCATCGAAGTATCACTT
GTTACTGTACAAGCCTGAATGAACATGGCCCAATCATAAGCTGGAAATCA
AAGAAACAACCATCGGTGGCGTTAACCACATGTGAAGCCGAGTACATGGC
AATGTCGATCACGTGCCAAGAAAACATTTCCCTGACACCGATTCTACGCG
AAATCTACGAACCAAATCCTGCCATTATCAAAAGCGCAAACCAATCAGCT
ATCGACGAGATCAAGAAATCAACAATTATTCAATGTGACAACCAAGGTGC
TATCGCTCTCGTCAAGAATCCTGTCAACCGACCAAAATCAAAGCACATAG
ATATTCGTTTTCATTTCATATGTGACTGTTATAATGACAATCGTATTGCA
ATCGATTATGTGCCTTCGAATTCAAACGTAGCCGACGTTTTCACAAGCCT
CCAAAAAAGCACCTATTGGAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052138-exon-scaffold_210-1491911889:39297..40797 | TCONS_00052138-exon-scaffold_210-1491911889:39297..40797 | Clytia hemisphaerica | exon |
| TCONS_00052138-exon-scaffold_210-1510915933:39297..40797 | TCONS_00052138-exon-scaffold_210-1510915933:39297..40797 | Clytia hemisphaerica | exon |
| TCONS_00052138-exon-scaffold_210-1575043694:39297..40797 | TCONS_00052138-exon-scaffold_210-1575043694:39297..40797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:39297..40797 . |
Blast
The following BLAST results are available for this feature:
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