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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052093 ID=TCONS_00052093|Name=TCONS_00052093|organism=Clytia hemisphaerica|type=transcript|length=4149bpRun BLAST on NCBI protein sequence of TCONS_00052093-protein >TCONS_00052093-protein ID=TCONS_00052093-protein|Name=TCONS_00052093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp RKRTASCQISHQFDFDFTLKMETAQMNHTGGNSNGEIKKSDAEWKSNLKLRun BLAST on NCBI transcript from alignment at scaffold_21:243437..262865- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052093 ID=TCONS_00052093|Name=TCONS_00052093|organism=Clytia hemisphaerica|type=transcript|length=19429bp|location=Sequence derived from alignment at scaffold_21:243437..262865- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_21:243437..262865- >TCONS_00052093 ID=TCONS_00052093|Name=TCONS_00052093|organism=Clytia hemisphaerica|type=CDS|length=13770bp|location=Sequence derived from alignment at scaffold_21:243437..262865- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052093 vs. Swiss-Prot (Human)
Match: DDX6 (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2) HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0 Identity = 313/406 (77.09%), Postives = 362/406 (89.16%), Query Frame = 2
Query: 110 IKKSDAEWKSNLKLPPKDGRIKTADVTDTKGNEFEDYCLKRELLMGIFEKGYERPSPIQEQSIPIALAGRDIMARAKNGTGKTAAYLIPLLERVNIDNTKIQALVLVPTRELALQTSQICKDLSNHLG-TKVMVTLGGTSLKDDIMRLYQTVHVVVATPGRILDLMKKGVADMSGCQMLVMDEADKLLSMDFKRLLDILISMLPSNRQILLYSATFPLSVKEFKDKHLNKPYEINLMDELTLKGITQYYAFVEEKQKVHCLNTLFSKLQVNQSIIFCNSVQRVELLARKITQLGYSCYYIHSRMQQSHRNRVFHDFRSGQCRNLVCSDLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINLITYDDRFNLYQIEQELGTEIKPIPPSIDKSLYV 1324
IK D +WK LKLPPKD RIKT+DVT TKGNEFEDYCLKRELLMGIFE G+E+PSPIQE+SIPIAL+GRDI+ARAKNGTGK+ AYLIPLLER+++ IQA+V+VPTRELALQ SQIC +S H+G KVM T GGT+L+DDIMRL TVHVV+ATPGRILDL+KKGVA + QM+V+DEADKLLS DF ++++ +I LP NRQILLYSATFPLSV++F + HL KPYEINLM+ELTLKG+TQYYA+V E+QKVHCLNTLFS+LQ+NQSIIFCNS QRVELLA+KI+QLGYSC+YIH++M+Q HRNRVFHDFR+G CRNLVC+DLFTRGIDIQAVNVVINFDFPK +ETYLHRIGRSGRFGHLG+AINLITYDDRFNL IE++LGTEIKPIP +IDKSLYV
Sbjct: 66 IKPGD-DWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470 The following BLAST results are available for this feature:
BLAST of TCONS_00052093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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