TCONS_00052085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052085
Unique NameTCONS_00052085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052085 ID=TCONS_00052085|Name=TCONS_00052085|organism=Clytia hemisphaerica|type=transcript|length=674bp
CCGCGATAGTGAAACATCAAAAAATACCATAGAAAGAACTTAAAGATTGA
ATAAGATTTGAAGCGAGAAATATTGAAATCAAAATGAGGGTTTTGTGTGT
AATTTTGATATTGGAATCTTATATCATTGGAGTAGTTCTTGCAAATACCG
GGGCTAGATTCACCgatacaaaaaataacaaaaagattGCCGCCGGTGAA
GACGATAAATATGTCAGTTTGAAAGGTTTAACGGAAGTGCAATGTGTTGG
TCATTGCACATTAACTGATGATTGCCATTCTGTGAATCACCATAGTGATG
ACCAGATCTGTCTGGTGATTGATGAACCATTGGAAGGTGATTCTCATTTG
ATTGATGCTCATGgatggaaatatttcaagaagaCAAGAATAACAAAAGA
GGATGAAATCTCAACAAAGAATAACTTTGAAATAACAAATGTTTGAATAC
AACAAATGGCATACTATCAAATTTACCCAACGTTCAAGTCCGATAAATGA
TCCGCTACAAACCCACGTAAGATCTCTGGTCGTTGATGGTATGTACGTCA
ACAAAATGCTTATCAAACTACCAGAAGTCTCGGAGAACTTGATTTGTTTT
GCTGGTTCACCTCATCACCTTGCGTTGAACGGTCGCGTCCGAAATTTGAC
GTTTAAACAAGATGGCCTTCCGCA
Run BLAST on NCBI

transcript from alignment at scaffold_21:110148..111945-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052085 ID=TCONS_00052085|Name=TCONS_00052085|organism=Clytia hemisphaerica|type=transcript|length=1798bp|location=Sequence derived from alignment at scaffold_21:110148..111945- (Clytia hemisphaerica)
CCGCGATAGTGAAACATCAAAAAATACCATAGAAAGAACTTAAAGATTGA
ATAAGATTTGAAGCGAGAAATATTGAAATCAAAATGAGGGTTTTGTGTGT
AATTTTGATATTGGAATCTTATATCATTGGAGTAGTTCTTGCAAATACCG
GGGCTAGATTCACCGATACAAAAAATAACAAAAAGATTGCCGCCGGTGAA
GACGATAAATATGTCAGTTTGAAAGGTTTAACGGAAGTGCAATGTGTTGG
TCATTGCACATTAACTGATGATTGCCATTCTGTGAATCACCATAGTGATG
ACCAGATCTGTCTGGTGATTGATGAACCATTGGAAGGTGATTCTCATTTG
ATTGATGCTCATGGATGGAAATATTTCAAGAAGACAAGAATAACAAAAGA
GGTATAGCTGATACTTTTTATGCTATAGTCAAATACAAATTACCAACTAA
AACTAAAACCAAAGCCAACTGTTTTTTTTTGCCGAAAATAGTTTACAGCC
GGTAGAGTTTACCAGTCTTCTTCGGGACTCTACTGTTGATTTTTTCAGTA
TACCGCTATTACGGCTGTGAACTCTGCGCATATAATATTCTCCCGACTTT
ACTATCCCTGTAAACATCGTCTACTATTATTTTAATATCATGGGACTTTG
GAAACTATTCTCCTTCTTGAAATTGAATGAAGGGGAAATGATTTTGGGAG
GTTTGAAATATTAAAGTCCCCAGCGCTTACTTCCCTTTCTCTTATCAAAG
AGACCCGGAGTGCTGGGTATGTGCGGACGGAGAGTTGCAAAAATTAGAAA
ATTTTTAGTTTTAAAGAAAGAATTGTGAAAAATCCCACCTATGGATAGGA
CGTTTTTCAAAAATAGAAGAGAATTTTCTAAGGGTCATTTTTTCACTAGG
ATTTGGTCTCTCCTAAGCCTTTTCCTTAGTTATAGGAGGTCAAAGAGACG
AATATGACCAAATCATCGATTCTCAATGCTCTTAAAGTCTTAAATGAAAT
CTTTTTTTGATTCAGGATGAAATCTCAACAAAGAATAACTTTGAAATAAC
AAATGGTAAGTCTACTGAATAAACTATGAGCATCTTAAATCTGTGTTACT
ATCCTCCTTTCTTAAGCTTTTGAAGCAATATTTCTTAGGTTACGTGTATA
CCAAAATTGTAATTCCGTTTCAAACATTTTTGACTACATTGAGAATCTCC
TATCCCGAGAGTCGCACTTCTACTTATCACACTTGTTCGGCAGATAGTTG
GTCAATGTGCATTATTCACTTGACTGTAAGTAACATTAGAGCTCGACTTA
AGTTTACGCTAAGATAATTAAATTTTCTTCATTAGCGTTCAAACCAAACC
CAAACAAGATCGTCAACTTTCTACCTTACCTAAAAGAAGAATGGGAATTA
ACTTTCAATATCATAATCTATGGAAAATCAGATCAAAACAAAAGTGGAAT
TTTCACAATGGCAAAAGAATTAACTGCTCAAAATAAATTGTTAAACATTT
ATGTTATCACTTCCACCGATCAAAAGATTCGAGTTTACACAAAAGAGATG
TCTTATTCTTTCAAGTTTGAATACAACAAATGGCATACTATCAAATTTAC
CCAACGTTCAAGTCCGATAAATGATCCGCTACAAACCCACGTAAGATCTC
TGGTCGTTGATGGTATGTACGTCAACAAAATGCTTATCAAACTACCAGAA
GTCTCGGAGAACTTGATTTGTTTTGCTGGTTCACCTCATCACCTTGCGTT
GAACGGTCGCGTCCGAAATTTGACGTTTAAACAAGATGGCCTTCCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032988XLOC_032988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052085-exon-scaffold_21-1575043694:111545..111945TCONS_00052085-exon-scaffold_21-1575043694:111545..111945Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1575043694:110891..110930TCONS_00052085-exon-scaffold_21-1575043694:110891..110930Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1575043694:110148..110380TCONS_00052085-exon-scaffold_21-1575043694:110148..110380Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1510915933:111545..111945TCONS_00052085-exon-scaffold_21-1510915933:111545..111945Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1510915933:110891..110930TCONS_00052085-exon-scaffold_21-1510915933:110891..110930Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1510915933:110148..110380TCONS_00052085-exon-scaffold_21-1510915933:110148..110380Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1491911889:111545..111945TCONS_00052085-exon-scaffold_21-1491911889:111545..111945Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1491911889:110891..110930TCONS_00052085-exon-scaffold_21-1491911889:110891..110930Clytia hemisphaericaexon
TCONS_00052085-exon-scaffold_21-1491911889:110148..110380TCONS_00052085-exon-scaffold_21-1491911889:110148..110380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:110148..111945 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0489583	0	0.182405	0.00246682	0	0	0	0	0	0	0.646088	0	0	0.953357	0.699835	0.868074	0	0.97035	1.84952	0.00330906	0.255729	0	0.0862784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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