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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052072 ID=TCONS_00052072|Name=TCONS_00052072|organism=Clytia hemisphaerica|type=transcript|length=1591bp
CATAATGTATAACGTTAAATAAGAGTTTTCCCGTTTCACTGATATTTCAG
AGTGATGAGCGACGAACTAGCACGATGGAAGTCTGTTTTATATTACAAAT
ATCGGGACTCCCATTCGGCCCTTCAAAACCTGTTACATGAACACTCCAAA
ATGAGGGCGCTCAATAACGCCACCAGAAGAGGTCTGGTACGGTTTGCTGA
AATAATGGAATGTAAAGACCCATCACTGGATACTATCTCGCCTTTAACAA
CGTTGGACGTCGCACTCATGAACACAGACTTGGTTGAATCTCTCATTACC
GTGATGgaagaaaacaaagatgaaCCCTCATCGGGCGCCAATGTTGCTAA
TAAGAAAATTGACATCACGGATATGGTCACTCATGAGACTgtgaaacaaa
aaatgaaaacaagtccACATAAAGACATTTATATTGAAGCGAGTGAATTA
ACACCTGCTGAACAGCTAGCACAAGAGatCGTACTAAACCCAGAAATCAA
ATCAGAGGAGCTAGTTCGTATGCGTCAGGACTATTTATCACACAATCGAA
TCTCTCATTTCATGTCCACCAATTATAATGTAACTTTCAACTGTTGTGAG
AAATGTAAAGGACCCATTTACATTGTATGACGAATCGgactgttattttt
attttcaaagtgaaACTCTCGCTTATCATACACCAAATTTGGAATGATTG
GAGTAAATGGCATTTTCAAACGTCAGAATCGGAATCAAAATATTGGTAGC
GAAAATCAGGAAGATTATCTTTACTTGATGAAACTGTTCTGTTTTAGTTT
CGTTTCTTAATTTGTTGATAAGACGGTCATTTTAGAGGCAGTTGATATTA
CTTCTCGAATTAAATCAAGTAAAGCAATGATCCTATCCTGTAATTCTTAT
CCTTCAGAAAATGTCATGGGCTTATAGTAATTAGGTCCAATAATAAAATT
AAAGcgttctcgtcccttcagttaataaTTATAAACCGATCTTCAACTCG
AAAAATTCCtgaactcgaacaaatttgtgtttcccgTGCGGTACTACACT
GGATTGAAAAATCCTtgtcttttttatgattttgtttgtTCAAAACATGT
TTTGGTAATTAATAGCCAATTAATTTTAACAAGGGCATTTGTATGCATTg
taattattttataaaatcttTTCCATTTTCCTCTGGACATACTGTTTGTC
ACCATATCATATCAAGTTGGGCTGCTATAATACCCGAAAATGATTCTTCT
CCATGCTGAGGTGAtaaatctcaatttttttccaaatttcatattttaga
CCTGGAATTTTCTTCTACTTTTTTGTCTATATTTTATAACGTATCATCTT
AGATTTTAACCGAAATTTCAATTACAGGGGTCACCTGGATTTTCAATCCT
TTCATGTCTTTTAACATAGCGGTGAAATTCATATCCTTTGCGTATCATAT
CGAACTCTTTTCTTGATTTCCATTCATACTGtagatttatttatattttt
gaaataaagtttattggcttttttgtacataatttaTTTGGATGCATTTT
GTAGATTAGATTTCTCAAAGGTGAAAGATGAGGAGACAGAT Run BLAST on NCBI protein sequence of TCONS_00052072-protein >TCONS_00052072-protein ID=TCONS_00052072-protein|Name=TCONS_00052072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MSDELARWKSVLYYKYRDSHSALQNLLHEHSKMRALNNATRRGLVRFAEI
MECKDPSLDTISPLTTLDVALMNTDLVESLITVMEENKDEPSSGANVANK
KIDITDMVTHETVKQKMKTSPHKDIYIEASELTPAEQLAQEIVLNPEIKS
EELVRMRQDYLSHNRISHFMSTNYNVTFNCCEKCKGPIYIV Run BLAST on NCBI transcript from alignment at scaffold_21:140575..143664+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052072 ID=TCONS_00052072|Name=TCONS_00052072|organism=Clytia hemisphaerica|type=transcript|length=3090bp|location=Sequence derived from alignment at scaffold_21:140575..143664+ (Clytia hemisphaerica)
CATAATGTATAACGTTAAATAAGAGTTTTCCCGTTTCACTGATATTTCAG
AGTGATGAGCGACGAACTAGCACGATGGAAGTCTGTTTTATATTACAAAT
ATCGGGACTCCCATTCGGCCCTTCAAAACCTGTTACATGAACACTCCAAA
ATGAGGGCGCTCAATAACGCCACCAGAAGGTTAGTATACACTTATTAAGG
ATGTCCACCCTgcaatattttcttacattacgtcactttcacaGCAGCTG
ATTGCTTGCTTGCAATACGGGCgcattaaataaataaaaaacacagATAT
ATTACATAATTAAGTCACATACATAGTTATGAATTAGGGgagacaaattt
aatttatttctctACGGCAAGAACTTCAGAAAAATATGAGTCGGTCAGTA
TTATAAGATTAAATTTCTTAAANGACCCTTCAATGttttctgacattacg
tcacttttacaGCAGCTGATTGCTTGCTTGcaacacagatattttacata
GTTAAGTTACATGCATAGTTATGAATTAGGGgagacaaatttaatttatt
tctctACGGCAAGACCTTCAGAAAAAATGAGTCGGTCGGTATTATAAgat
taaatttcttaaaatgtaGGGTCGGAAGGTCAAGATCTAAAAAATTTACC
GGTTTGCAAATTCAACCTTTTTATTTATAGGTCGGTCGGGTCCgtagaaa
aaaagattaaacTGATTTTGCCTTGCTAGACCCTAGTTATAGTCCCTCTA
ATTTCATctgattgggcttttccagaaatattctGCTTCCCCTATATGGT
ctggtttttcgagtgtaaGAATCCAGGGTGTACAGTTAAAATGaagttga
aaatccagggtggtccaaaaaattgagaaaaaaaatctagggGTCACCTT
TCCCCAAAAAGACCTCGACATAGGGGGTAAGATCTTTTTCTGGAATATCC
CATTACTCGTTAACGAATTTTTTAAGTGCAAAACTTTTCTCTTCATCATC
ACAAACAATGGAAAAAAAGTACGTAAATCATTATCCAGACCAAACTGGAT
GAGCTCAATACCAAGTCGATTGTcgttcaaaatttgaaagtttcgGAATA
GGACCCCATTCACATTTTTCGGTTCCGTGCCGTTCAAAACAAATTGAACT
CACTCTATTGGCTAGAAACAACGGTCACCCCCTAATTCATCCAATGGAAT
AGCTTCTAAGAAGGGGTTACTTaaaattttttggcatttttataGTAGTT
ATAGCagttttttagcattttcaaaaaaaggggtTCATAAAGCTAAAAGA
GAGGGAGAGGCGAGTTAAAACTACTGAAGAAAGATATGTGATACTTTTTT
GGACGATATTTTCACAGAGGTCTGGTACGGTTTGCTGAAATAATGGAATG
TAAAGACCCATCACTGGATACTATCTCGCCTTTAACAACGTTGGACGTCG
CACTCATGAACACAGACTTGGTTGAATCTCTCATTACCGTGATGgaagaa
aacaaagatgaaCCCTCATCGGGCGCCAATGTTGCTAATAAGAAAATTGA
CATCACGGATATGGTCACTCATGAGACTgtgaaacaaaaaatgaaaacaa
gtccACATAAAGACATTTATATTGAAGCGAGTGAATTAACACCTGCTGAA
CAGCTAGCACAAGAGGTATGTCACCACGGAAAAActctttaatttttcta
ttttgaatttaaattatcCTTCTgtctgtgaatttttttctttttctgcg
AAAATATAATTGCCTAATCGTTTCCAAATGTTAATTGCAATGTTCTTAAT
AGACTGTACATAATTTACGATCTGTCTGGGGCGTTATTGGCGGCCGCCAA
CCCTAAAGCTTCAATGGGACGGAGAAAACCTAACGCCTTTTTTGCGGTGC
TTGCTTCAGGACTTCAGGACAAAACTACAAACTACTATCATACAGGACTA
ATTgttgtatttatttttctttctagatCGTACTAAACCCAGAAATCAAA
TCAGAGGAGCTAGTTCGTATGCGTCAGGACTATTTATCACACAATCGAAT
CTCTCATTTCATGTCCACCAATTATAATGTAACTTTCAACTGTTGTGAGA
AATGTAAAGGACCCATTTACATTGTATGACGAATCGgactgttattttta
ttttcaaagtgaaACTCTCGCTTATCATACACCAAATTTGGAATGATTGG
AGTAAATGGCATTTTCAAACGTCAGAATCGGAATCAAAATATTGGTAGCG
AAAATCAGGAAGATTATCTTTACTTGATGAAACTGTTCTGTTTTAGTTTC
GTTTCTTAATTTGTTGATAAGACGGTCATTTTAGAGGCAGTTGATATTAC
TTCTCGAATTAAATCAAGTAAAGCAATGATCCTATCCTGTAATTCTTATC
CTTCAGAAAATGTCATGGGCTTATAGTAATTAGGTCCAATAATAAAATTA
AAGcgttctcgtcccttcagttaataaTTATAAACCGATCTTCAACTCGA
AAAATTCCtgaactcgaacaaatttgtgtttcccgTGCGGTACTACACTG
GATTGAAAAATCCTtgtcttttttatgattttgtttgtTCAAAACATGTT
TTGGTAATTAATAGCCAATTAATTTTAACAAGGGCATTTGTATGCATTgt
aattattttataaaatcttTTCCATTTTCCTCTGGACATACTGTTTGTCA
CCATATCATATCAAGTTGGGCTGCTATAATACCCGAAAATGATTCTTCTC
CATGCTGAGGTGAtaaatctcaatttttttccaaatttcatattttagaC
CTGGAATTTTCTTCTACTTTTTTGTCTATATTTTATAACGTATCATCTTA
GATTTTAACCGAAATTTCAATTACAGGGGTCACCTGGATTTTCAATCCTT
TCATGTCTTTTAACATAGCGGTGAAATTCATATCCTTTGCGTATCATATC
GAACTCTTTTCTTGATTTCCATTCATACTGtagatttatttatatttttg
aaataaagtttattggcttttttgtacataatttaTTTGGATGCATTTTG
TAGATTAGATTTCTCAAAGGTGAAAGATGAGGAGACAGAT Coding sequence (CDS) from alignment at scaffold_21:140575..143664+ >TCONS_00052072 ID=TCONS_00052072|Name=TCONS_00052072|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_21:140575..143664+ (Clytia hemisphaerica)
ATGAGCGACGAACTAGCACGATGGAAGTCTGTTTTATATTACAAATATCG
GGACTCCCATTCGGCCCTTCAAAACCTGTTACATGAACACTCCAAAATGA
GGGCGCTCAATAACGCCACCAGAAGAGGTCTGGTACGGTTTGCTGAAATA
ATGGAATGTAAAGACCCATCACTGGATACTATCTCGCCTTTAACAACGTT
GGACGTCGCACTCATGAACACAGACTTGGTTGAATCTCTCATTACCGTGA
TGgaagaaaacaaagatgaaCCCTCATCGGGCGCCAATGTTGCTAATAAG
AAAATTGACATCACGGATATGGTCACTCATGAGACTgtgaaacaaaaaat
gaaaacaagtccACATAAAGACATTTATATTGAAGCGAGTGAATTAACAC
CTGCTGAACAGCTAGCACAAGAGatCGTACTAAACCCAGAAATCAAATCA
GAGGAGCTAGTTCGTATGCGTCAGGACTATTTATCACACAATCGAATCTC
TCATTTCATGTCCACCAATTATAATGTAACTTTCAACTGTTGTGAGAAAT
GTAAAGGACCCATTTACATTGTATGAATGAGCGACGAACTAGCACGATGG
AAGTCTGTTTTATATTACAAATATCGGGACTCCCATTCGGCCCTTCAAAA
CCTGTTACATGAACACTCCAAAATGAGGGCGCTCAATAACGCCACCAGAA
GAGGTCTGGTACGGTTTGCTGAAATAATGGAATGTAAAGACCCATCACTG
GATACTATCTCGCCTTTAACAACGTTGGACGTCGCACTCATGAACACAGA
CTTGGTTGAATCTCTCATTACCGTGATGgaagaaaacaaagatgaaCCCT
CATCGGGCGCCAATGTTGCTAATAAGAAAATTGACATCACGGATATGGTC
ACTCATGAGACTgtgaaacaaaaaatgaaaacaagtccACATAAAGACAT
TTATATTGAAGCGAGTGAATTAACACCTGCTGAACAGCTAGCACAAGAGa
tCGTACTAAACCCAGAAATCAAATCAGAGGAGCTAGTTCGTATGCGTCAG
GACTATTTATCACACAATCGAATCTCTCATTTCATGTCCACCAATTATAA
TGTAACTTTCAACTGTTGTGAGAAATGTAAAGGACCCATTTACATTGTAT
GAATGAGCGACGAACTAGCACGATGGAAGTCTGTTTTATATTACAAATAT
CGGGACTCCCATTCGGCCCTTCAAAACCTGTTACATGAACACTCCAAAAT
GAGGGCGCTCAATAACGCCACCAGAAGAGGTCTGGTACGGTTTGCTGAAA
TAATGGAATGTAAAGACCCATCACTGGATACTATCTCGCCTTTAACAACG
TTGGACGTCGCACTCATGAACACAGACTTGGTTGAATCTCTCATTACCGT
GATGgaagaaaacaaagatgaaCCCTCATCGGGCGCCAATGTTGCTAATA
AGAAAATTGACATCACGGATATGGTCACTCATGAGACTgtgaaacaaaaa
atgaaaacaagtccACATAAAGACATTTATATTGAAGCGAGTGAATTAAC
ACCTGCTGAACAGCTAGCACAAGAGatCGTACTAAACCCAGAAATCAAAT
CAGAGGAGCTAGTTCGTATGCGTCAGGACTATTTATCACACAATCGAATC
TCTCATTTCATGTCCACCAATTATAATGTAACTTTCAACTGTTGTGAGAA
ATGTAAAGGACCCATTTACATTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052072-exon-scaffold_21-1491911889:140575..140753 | TCONS_00052072-exon-scaffold_21-1491911889:140575..140753 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1510915933:140575..140753 | TCONS_00052072-exon-scaffold_21-1510915933:140575..140753 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1575043694:140575..140753 | TCONS_00052072-exon-scaffold_21-1575043694:140575..140753 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1491911889:141942..142239 | TCONS_00052072-exon-scaffold_21-1491911889:141942..142239 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1510915933:141942..142239 | TCONS_00052072-exon-scaffold_21-1510915933:141942..142239 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1575043694:141942..142239 | TCONS_00052072-exon-scaffold_21-1575043694:141942..142239 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1491911889:142551..143664 | TCONS_00052072-exon-scaffold_21-1491911889:142551..143664 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1510915933:142551..143664 | TCONS_00052072-exon-scaffold_21-1510915933:142551..143664 | Clytia hemisphaerica | exon |
| TCONS_00052072-exon-scaffold_21-1575043694:142551..143664 | TCONS_00052072-exon-scaffold_21-1575043694:142551..143664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:140575..143664 + |
Blast
The following BLAST results are available for this feature:
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