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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052071 ID=TCONS_00052071|Name=TCONS_00052071|organism=Clytia hemisphaerica|type=transcript|length=707bp
AtgctctattttttttttttgccaaaatacaaaaatggtagagtgaGCTG
TGATATAGTAAAAGATATCGAAAAATCTCAGCTCTGTGTTTTTGGAATTT
CGTGTATGATTTTTCTCAAAGCAGAATGGAACCTGAAACAGTCACTATGG
TCAGAGGTGGAAGCAGTTTATTAGTGAGAGgaAAGGAAAGATGCCCTGGA
GATGGGATGGAAGATCACACCTTAGCACAACACATCAAAACTGTCTCAAC
TTCATACAAAAACGTCAACAAATCCAAAATTCTAAACCCTACACCAGCAA
TTgttaagaaaatcaacttcaatGATTCTCAACAAAACTTAACAACGTCT
GGATCTGATTCTTCcatttacagtaatatattcACCACGCCTGACCAGAC
ACTCTCAGTACCAACCAGCCACGATGAAACGCTTCAAAACTCCTTTGCTG
AGTTGAGTATTACTAATGAAACGTTGAAGACACAGTTAAGTTTATATCAA
CAACACAATGACCAACTGACTGAACAGAAAATGAAGTTATCACAACAGCT
CGGTATACAAACGCagGTTAACAATGAAGTAAAGAGATTATTAGTTGCCT
CCATTGGTGAAGATTTACAACAAAAGTAAGACTTAAAatttatctttgat
tttttaatttgactGACAATCATTTAAAGATTCATTTAAACCGTCTGAGG
ACCGGAC Run BLAST on NCBI protein sequence of TCONS_00052071-protein >TCONS_00052071-protein ID=TCONS_00052071-protein|Name=TCONS_00052071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MEPETVTMVRGGSSLLVRGKERCPGDGMEDHTLAQHIKTVSTSYKNVNKS
KILNPTPAIVKKINFNDSQQNLTTSGSDSSIYSNIFTTPDQTLSVPTSHD
ETLQNSFAELSITNETLKTQLSLYQQHNDQLTEQKMKLSQQLGIQTQVNN
EVKRLLVASIGEDLQQK Run BLAST on NCBI transcript from alignment at scaffold_21:125722..132226+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052071 ID=TCONS_00052071|Name=TCONS_00052071|organism=Clytia hemisphaerica|type=transcript|length=6505bp|location=Sequence derived from alignment at scaffold_21:125722..132226+ (Clytia hemisphaerica)
AtgctctattttttttttttgccaaaatacaaaaatggtagagtgaGCTG
TGATATAGTAAAAGATATCGAAAAATCTCAGCTCTGTGTTTTTGGAATTT
CGTGTATGATTTTTCTCAAAGCAGAATGGAACCTGAAACAGTCACTATGG
TCAGAGGTGGAAGCAGTTTATTAGTGAGAGGTATGTATAGGGGTTGTATT
TTGGGGGATGTTTTGCTGGGGGCAGAtgttagcaactccagaagattttt
caaattttaatttgtttttcaaaatctatcctatcttgtagagctttgaa
aaggaaagaaaatgaggggtcataggcctccagaggataagtggttgtaa
agatattcaaattttagtgtcaaaaatttgactaaaaatgtcaaaaaaaa
ggttaggttaggatccagactccacctcaatttgcaaaagttgctagcaa
aattaCACCGTGAATGGTCCTAAATCCAGTCAGGGCCTCCTTGGTCTTTT
ATAATatttagttcggatagaataaaaacatacctgatcaacacaaccaa
accttttgtcttgcgtttactccttcgcaacaactttcgtttttgtttat
gtaggttttaaaatccacaagtccAGACGATCTctctcaatcgaacagaa
tcgacgatcgaaccagtcgaaccaaatcgaacgcaatcgacagattgaaa
ttcgattgtcgaacgcaatagaccttttcgcctttccatccgccatcttg
aattgtatgcaaaaatagaggaacaaaaaagccgtggttggatttaatta
gttggaaaatatgcaaaacatatgcaattttacacaaagattaaaaatac
AATCAAAGCATCTTATagagaaatattataatcattagaacaataaaaga
tggaatttcttaatccaaaaagaaatatttacagaacaacaaaagccttt
tagaaatttgttcttaaagacattgcatattgtgTTTTCCtgtcattaaa
aaattccaccaagacggagtacacacatcaaactttcaaaacacgcaaac
tgaaagcatgattatgacgtcacacattcagaGGGTTCAgaacaatgttt
tgatttgatcgtctgacggttctattcccaggagaataatttaccgtcag
ccgaataaggatatttttgtaccttcgcggatgatttttcagcttgagtt
tatgtctattgttatggttttttgaagtgcttgttctaagagatgagcga
atttgattatttctagttttcaaaagaagcaaatctaatctttcttctac
aagattacactttaatataatgccaattatgcatgtaagttttatattaa
tactttctttttgcacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNtgttttgcatactttctaagggaatttcaccacggcaatt
tggccaccataatttttgcatacaattcaatatggcggatggaaaggcga
aaaggtctatcaaatctcaatcgaacgtcaaaattatgggtaatattcga
ttggttcgattgttgtttgactggttcgattgtcgtTCGACTGCATTCGA
TTGTTCGGGTgacacgtgcgtttggtttgggaacgcgaaacacgaacacg
aactacccatgtctatAGACccgtttcaatgttttgatttttcgcgTTTG
TATGCGCATGTGCCAAAATAGTTACGGTTTTTCAGAGGCAGAAAACACGA
AGCGCTCACTGGAAAAAggcagttttgattttatttttcaaaatctcttC
ATCAGAATTTCATGATATTTTATAGTATAAGAATCCTATACAGTTCTTAg
ataacatactaaaatttctattcaaaattccttctagatcctGAGAAAAT
TGACATAAACTGCGTGCCTCCAGCTAATGTTGTTGTCTTTTTTGCCTCTG
TAAGTCGGGCCGTTTTGCGGGTCGTAAGGAGCAGATGTAAACATGTGACG
TCACATGAAACGGGTCtatacttttcaatatatctccagaactactgtaa
cagattttttgaaattctgcaaaaaggtctaagttcctgaatagttttac
tatgttctgtgaaaaaatcataaccatcagtagcaactccagaaaatttt
tcaaatttcaattttttttcaaaacctatcctatcttgtaaagctttaaa
aaaggaagaaaatgaggggtcataggtctcagaggataagtggttgtaaa
gatattcaaattttagtgtcaaaaatttgactaaatgtcaaaaaaaaggt
taggaaaatagcttggaaaaattcgaaaaatgtgtcaaaaaagaaaaaaa
agaaattttccagtcatgcttcttcaattttgcatatctcttttttctag
tgtagctagagacctgaaatttggagggagaattctttgatggtgttaga
atattattatataaaaatatttgtaagatatttagtatatttatcaaaat
aacgaaagatatatatttttttgaaaaaagaagacattgcattgttttat
ttttgtttttgaagaaaagtagcttggaaaaggttgaaatgagtcaaaaa
aggtggtaggacccattttcaaggggcctcttgAAATGGAGtcgaacaaa
aacttatgagtaaagaataagtttttctgaaaggagaaaccccaaataaa
aagaaaatccatttcggcagaaataaaaacttttttttgggacattccca
tgcaaaagaagcaaaaaagtgaaaaaaactacatgaaaatgaaagaacta
aaattggcgaatgtgatttttgaattcctcgccctttttctgataaacat
acaaagtttcagcctccaaatacattttcctccgtttccagacacatttc
tTCATCGATagttgcattttttttttctcccgtcggcaaacaatttgcaa
aatgttgcaaaacgttcggcattttaccaatttgccgtctagcccgtgtc
cacagtgttatatgccgctggaaagctaagatcacaggctttcatttagt
aaaaaccagaACGCTTTAGCATGTATACATAGAAAAAGgttcgaagggtt
caaagttcacggaagaatgaaacatttggtttgacgtcagcgaaagttgc
atgacttctggagtcgctaccatcagtcaaatactcgttcatctatttaa
gattgaagacaaaaatttgcgaagaaagataaaccttgagcacaaaaaat
gcttttttaaacacttttttccaccgaaaaacaaatgacttttacagact
taccttccccaaacattgaagaagcctcttctaattaaagtaaatgagat
agcAACAAAGCAACAGACGTGCTTTTcttgccgccattttgttttagaat
aagaattctagagaattccattcggtTCCAGCCCCGCGGTCTTTTttatc
caatcagatcgcgcgatttcactttcgctttctctagtctaataagactg
cgggatttgagtcatgtgacatctctattaaaaaacccgcgcgaattaaa
atagaaatacagggggtcacactactggctacaggaactgaaagcaagca
attaaggccaatatgtttggtttttctgaaggacaaaaggtataggaagc
tttactgaaatagggataaggctgggacaatctatttaaaagatatggac
aaaaaaaaggcacttttttgggtgataattaagattttacttagaaactt
taattttcttacccccgtctcggccccccctgatatgagcaagggaacaa
TGTTGGCCATCCCTACTGacaatttcagatcaaaacaaacaaggaattaa
ttcctgtagctcaaagaaaattggaaaaagctggtttttgactgtttctg
atcctaaagtgctattttttggtaaaagctatgcaatttatgtttggatt
tatagaaagcttacccattcattgtcaatacattttttatttgaaagtaa
tctcttcatggaataaaaagatatcttcaaatcttgtagggtcatttttc
aaagaaaatttgccaaattcgattttcgcatttcgccattttaccctacg
caaacgcacgtggtgaaacaaggcatgtcccaaatatattttgtgtGACG
CGCACCACTTCCCATTATTCCTTAActctcatatatagctcaaaagaatc
gaaTCAACGAGAAGGGTCAGCTTTTTAACAAagattagtctctctaaggg
tcggatcctaatcgaacgcaatcgaacacaatcgaacgcaatcaaatctg
aaaattgcggtaatattcgattgagattcgatcacgttcgacaatcgaat
ttcaatcggtcgattgtgttcgatttggttcgactggttcgatcgtcgat
tatgttttgaaaaagttgctacAAGCCTATTTTGTAGGCGGGTTTGCGCT
ATGGGCCCGGGGGTCCGGGGGACCCTTAAAAAGGGTCCCCcatcaaaaat
ttcactttcttaCCTGTTTTTAGGATATTTAGCAACTTTTGTATATGGtc
cataaaaaaattatgtcatAGTCCCTCCCctagatttaggaccactcacg
gtactgaGTCGCTCTATAAAGTTTGGGAGGCCAAAAATCAACAGAGTAAA
AAAATCTCCTTTAAAGGggcattaaagtagtaaaatgtaaacattgcgcg
agccacgtgtcattaaagagaacaattaaaatcacgtgtccaaaacaaac
ttgtaaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgtttgatttttttattttgacatgtgacatttgttttgatttt
gtatccgctgcatacagtttgtttacaaatttcacaagtactgttatgtc
cctttaactaAGGTAAAGATATCTCCTAATGAAGAGAACTTCTCTTAGAT
AGAGTATAATCCCGTCTGTCTGCCCACCCAGTTAGGAGGGGCTGATCCTA
TTTTGCAACCAAATGTCCTACAACCAAAAACCCATCAACAAAAAGATATC
TTTTGAGGTTGGGAATGGGTCCTGCAGAGATGAAAAGAATTTGACAAGGC
ATTTGTTTGGCAAACTCATAAACTCTAATTTTGTTCTTCCCTTTTGTCTT
CttatttaaatttctttcttttaggaAAGGAAAGATGCCCTGGAGATGGG
ATGGAAGATCACACCTTAGCACAACACATCAAAACTGTCTCAACTTCATA
CAAAAACGTCAACAAATCCAAAATTCTAAACCCTACACCAGCAATTgtta
agaaaatcaacttcaatGATTCTCAACAAAACTTAACAACGTCTGGATCT
GATTCTTCcatttacagtaatatattcACCACGCCTGACCAGACACTCTC
AGTACCAACCAGCCACGATGAAACGCTTCAAAACTCCTTTGCTGAGTTGA
GTATTACTAATGAAACGTTGAAGACACAGTTAAGTTTATATCAACAACAC
AATGACCAACTGACTGAACAGAAAATGAAGTTATCACAACAGCTCGGTAT
ACAAACGCaggtttgttaaaaaaatgttcaatggccaaaatataaagaac
tagtttttaagactttgcagactctaaaacacccaatttcttaggaagtt
acacgaaaatactcacaaaatgctgaaaataagaacatttgaaggctaaC
TAAAATTTTGGACGTTCCAATAAAAAATCGAGTGTTCCATGATATAATTT
GACCGCAATGAATACACAAAAGTATTTGACTTTTCTTCTCTGCCATATAC
CACCTGCTATCCAATCAGCTATCCTTTGAAAGTGGCGTGATGTCAGAAGT
AGTACTTGCTGAAGTACTGACAGTTCATTTTTCTATGCGACAGATTGCGA
GTAGGACCGGTTATTCTGCTTCCCAAGCAAATTTCTTGAAAACCCCATAT
TATACAATgtataaaaattgtaaaaatttgtcaaaCTCTCTTAAAGAGCT
GTTCAAAATAGTCGTTTTATCTATTTCTCGAGAAAGATGTATTATTTGTC
TATGGATATTAAATGACATTGATGGCATGTATTGTCTTTGAGTGTGTACG
TTACGTTCTGTAATTAGATTTTGATAACAATTCTTTAAAATtgtgacaat
ttttttcttgttagGTTAACAATGAAGTAAAGAGATTATTAGTTGCCTCC
ATTGGTGAAGATTTACAACAAAAGTAAGACTTAAAatttatctttgattt
tttaatttgactGACAATCATTTAAAGATTCATTTAAACCGTCTGAGGAC
CGGAC Coding sequence (CDS) from alignment at scaffold_21:125722..132226+ >TCONS_00052071 ID=TCONS_00052071|Name=TCONS_00052071|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_21:125722..132226+ (Clytia hemisphaerica)
ATGGAACCTGAAACAGTCACTATGGTCAGAGGTGGAAGCAGTTTATTAGT
GAGAGgaAAGGAAAGATGCCCTGGAGATGGGATGGAAGATCACACCTTAG
CACAACACATCAAAACTGTCTCAACTTCATACAAAAACGTCAACAAATCC
AAAATTCTAAACCCTACACCAGCAATTgttaagaaaatcaacttcaatGA
TTCTCAACAAAACTTAACAACGTCTGGATCTGATTCTTCcatttacagta
atatattcACCACGCCTGACCAGACACTCTCAGTACCAACCAGCCACGAT
GAAACGCTTCAAAACTCCTTTGCTGAGTTGAGTATTACTAATGAAACGTT
GAAGACACAGTTAAGTTTATATCAACAACACAATGACCAACTGACTGAAC
AGAAAATGAAGTTATCACAACAGCTCGGTATACAAACGCagGTTAACAAT
GAAGTAAAGAGATTATTAGTTGCCTCCATTGGTGAAGATTTACAACAAAA
GTAAATGGAACCTGAAACAGTCACTATGGTCAGAGGTGGAAGCAGTTTAT
TAGTGAGAGgaAAGGAAAGATGCCCTGGAGATGGGATGGAAGATCACACC
TTAGCACAACACATCAAAACTGTCTCAACTTCATACAAAAACGTCAACAA
ATCCAAAATTCTAAACCCTACACCAGCAATTgttaagaaaatcaacttca
atGATTCTCAACAAAACTTAACAACGTCTGGATCTGATTCTTCcatttac
agtaatatattcACCACGCCTGACCAGACACTCTCAGTACCAACCAGCCA
CGATGAAACGCTTCAAAACTCCTTTGCTGAGTTGAGTATTACTAATGAAA
CGTTGAAGACACAGTTAAGTTTATATCAACAACACAATGACCAACTGACT
GAACAGAAAATGAAGTTATCACAACAGCTCGGTATACAAACGCagGTTAA
CAATGAAGTAAAGAGATTATTAGTTGCCTCCATTGGTGAAGATTTACAAC
AAAAGTAAATGGAACCTGAAACAGTCACTATGGTCAGAGGTGGAAGCAGT
TTATTAGTGAGAGgaAAGGAAAGATGCCCTGGAGATGGGATGGAAGATCA
CACCTTAGCACAACACATCAAAACTGTCTCAACTTCATACAAAAACGTCA
ACAAATCCAAAATTCTAAACCCTACACCAGCAATTgttaagaaaatcaac
ttcaatGATTCTCAACAAAACTTAACAACGTCTGGATCTGATTCTTCcat
ttacagtaatatattcACCACGCCTGACCAGACACTCTCAGTACCAACCA
GCCACGATGAAACGCTTCAAAACTCCTTTGCTGAGTTGAGTATTACTAAT
GAAACGTTGAAGACACAGTTAAGTTTATATCAACAACACAATGACCAACT
GACTGAACAGAAAATGAAGTTATCACAACAGCTCGGTATACAAACGCagG
TTAACAATGAAGTAAAGAGATTATTAGTTGCCTCCATTGGTGAAGATTTA
CAACAAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052071-exon-scaffold_21-1491911889:125722..125901 | TCONS_00052071-exon-scaffold_21-1491911889:125722..125901 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1510915933:125722..125901 | TCONS_00052071-exon-scaffold_21-1510915933:125722..125901 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1575043694:125722..125901 | TCONS_00052071-exon-scaffold_21-1575043694:125722..125901 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1491911889:131096..131481 | TCONS_00052071-exon-scaffold_21-1491911889:131096..131481 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1510915933:131096..131481 | TCONS_00052071-exon-scaffold_21-1510915933:131096..131481 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1575043694:131096..131481 | TCONS_00052071-exon-scaffold_21-1575043694:131096..131481 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1491911889:132086..132226 | TCONS_00052071-exon-scaffold_21-1491911889:132086..132226 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1510915933:132086..132226 | TCONS_00052071-exon-scaffold_21-1510915933:132086..132226 | Clytia hemisphaerica | exon |
| TCONS_00052071-exon-scaffold_21-1575043694:132086..132226 | TCONS_00052071-exon-scaffold_21-1575043694:132086..132226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:125722..132226 + |
Blast
The following BLAST results are available for this feature:
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