TCONS_00052067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052067
Unique NameTCONS_00052067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052067 ID=TCONS_00052067|Name=TCONS_00052067|organism=Clytia hemisphaerica|type=transcript|length=615bp
ATTTGTGTTGCGGCTAGTCGAAGGACTTTGTGAGGGTTGCATTTACCCGG
CAATGTATTCGATATGGAGTCGTTGGGCGCCACCCATGGAAAGGGCGGCT
CTAGTTACCATACCTCATTCAGGATCGTATGCAGGATCGGTGGCAGGAAC
ACTACTTGCTGGATACCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTTCT
ATTTCTTTGgtATTTTAGCATTAATTTGGGTAGTTGTATGGCAGATCCTT
GCATCAGATTCACCAGAAGACGATAACCATATATCAAATGTTGAACGAAG
AATGATTTTAGAAAGTTTGGAATCAGAGCACACTTCACAAAAGCTTTCAG
ATGATCTTCCATGGTTTTCAATCTTCACTTCTTTACCTTTCATTTCAATT
GCGGTGGCCCACACGTGCGAAGGATGGGCATTCGGTTTGATTCAAACATC
CTTCCCCAAATATTTGAGTGAAGCTCTAAattatagaatttttaaaTCCG
GTCAATACACCAGCCTGATATATTTCCTGATGGGATTTTCAACATTCGTC
TCTGGTCAACTATCTTCATGTTTGAGAAGGCGAGGTGTTTCGGCAACAGT
TCTACGTAAAGTATT
Run BLAST on NCBI

transcript from alignment at scaffold_21:18015..21331+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052067 ID=TCONS_00052067|Name=TCONS_00052067|organism=Clytia hemisphaerica|type=transcript|length=3317bp|location=Sequence derived from alignment at scaffold_21:18015..21331+ (Clytia hemisphaerica)
ATTTGTGTTGCGGCTAGTCGAAGGACTTTGTGAGGTAAGGAGAGCTTTAT
TGGTCAAAAATGACGAGGTGTGAAAAGTGTTGGGAAATTGCGTAATTTAA
CAAAAATCAGACACTATAGgctatttcacagtcgaaatggatcatgggta
atcaggactgattgcgcctccgtaacggctttctgttggctagacgcaat
aatcttcaaaaaatttcaaaactctggaccaatagtaagtcgtcattagc
acgcagtggtcctgattacccattacgctttgcgactgtgaaatggccta
tagaggaaaacattcgaatttgaaaCGGTCATTACTTccacaaatcgaat
gttttattAAAGACAGTAATGGTTGATTTTATTTGACATATCCTTCAAAC
TTTTAAATTAATAAGCTGTTATAAGGGAAATGGAGGCAATCTAGCTATCT
AGCAAAATACGCCAAAGAATGTTTACAattcaataaatcaaaatacATGC
TGGCACGGTTAAAGCGGATAAAGCACCTTTTTTAATTATAGGGTTGCATT
TACCCGGCAATGTATTCGATATGGAGTCGTTGGGCGCCACCCATGGAAAG
GGCGGCTCTAGTTACCATACCTCATTCAGGTAAGAGGGAAATATGGATGG
AATTCTTNCGTTGGGCGCCACCCATGGAAAGGGCGGCTCTAGTCACCATA
CCTCATTCAGGTAAGAGGGAAATATGGATGGAATTCTTCAGCAAAATGTT
ATCAATGCCAAAAATTGCCTTGTTTGCCCCTCAGTAGAATTTGAACTTTA
CATTCAAACTAATGCACATGGGAAGTCATTGTGCAACAAACAAGtcctaa
agtctgtccagatataattgacagtggaaacaagaatgcctgtaactttt
aatagtgaaatataattccaaaatttttttttgcttgttttagagattca
aaagcgctatatttgaatgtattttttgttgaaaaattcgcgagttttag
cggttaaatttgcgattgcaaatattgagctttttttctttttatgctat
aacgttcatttttaaacTAGTGGTAGTTTAACCTTAGGTAAAGAAGGTTG
TTGAATTTCAAGCCAAacggaaaagtccttcggaagatatgggacccgaa
ataccccttggtagcacttttctgtgaaatatcaaatctccaaattttta
ctaaaaacggtggttatgttatcttttttgaacagtgaaattaaaagttt
ttggaattatatttcactattaaaagttacaggcattcttgtttccactg
ccaattatatctggacagccTTAATTTCAATAAGGCAACAAGGTTTTTAG
ATCTTTCCCAATCGGGGCAATTGGGAACTTCTTTTGGTTTCTAGTTTAGC
AGGTACAACCAtcaaacaaaaactaaaaaaaaagttttttagccTAGGGT
ATCACCTAATTTATGACTGCTCCTTCAAAATTTCCGTTCTATCTTTATTT
AATCATAGGATCGTATGCAGGATCGGTGGCAGGAACACTACTTGCTGGAT
ACCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTTCTATTTCTTTGGTAAG
TAAAATTATCACACATATATAATCGAAATTGAACCTGGGGGTGCACCCGA
TCTTAAAACTACCGTATGCACTGAAAAAACTTATTCAAGATTGAATcttt
acagtgcagagaaaatttagccaaaactGAGTAAGTTggtcgaaaaatgg
acccttaTGGTGTATTTTACTTCAGAAAATagtcagattttccaaaattt
tcataTTACACCCCTACAGTGCACGTTCTCACATTTCGACCCTtgcactt
tgggaagcctgCATCGGGGAAAacagaacatattttttttaccaaaCCAG
AAAGATAatggaaaattgaaattgaagtaGCGAGTTCAACTATATTGGTA
TATGTTTTGTTTCCACgtatatggaaatttttaaggATTTTCCAGGAACG
TTTTGAAGTTTAGTAACGTTTCTTTCACTCCAAATAAATGGATACGACTG
AAAGCCCAGTGTAAAagataaattatttcattttcaggtATTTTAGCATT
AATTTGGGTAGTTGTATGGCAGATCCTTGCATCAGATTCACCAGAAGACG
ATAACCATATATCAAATGTTGAACGAAGAATGATTTTAGAAAGTTTGGAA
TCAGAGCACACTTCACAAAAGGTAAGAGACAGCGATAAAATGCGTATTAG
TGAGGGGTGTGGTATAAGATTTAGTCCCTTCCTATGAATATTACCGCAGA
AATCATTTTTTGCTGATAGAATTTAAAACACAAGTCCGCCATTTGGTTCC
AAGACGACAAAAACCTAGCTTTTGTTACCTCAGTTCGGAAAACAAGGTAT
AGAGTTTTTCATGATTTGCTGAGTTACAAACTTTCCGTCAGACGGAAAAA
AACGTTCGATTTTCGTAAGCGATCACCTTTACatattcgaacgtttgctt
ccataatggtggaaattacgtaactttaAAAAACATGAAGAACTTCTATA
TACGGCATAAACCGTACATGCGGGATAAGCCGAGTTTGGTCTTTCGTTTT
CATTAGCTCACAATTCAAGGTGACACTAAAATCTTACCTTTACTATGAAC
ACAACTTTTCATTTCAGCTTTCAGATGATCTTCCATGGTTTTCAATCTTC
ACTTCTTTACCTTTCATTTCAATTGCGGTGGCCCACACGTGCGAAGGATG
GGCATTCGGTTTGATTCAAACATCCTTCCCCAAATATTTGAGTGAAGCTC
TAAattatagaatttttaaagTAAGTTAACAACTGTTTATAAGAGAACTT
TAGGTCTCTCTTCATAATTCTTTCTGCTGTTTATTTTGGTATTGAACCGA
CGTTCAGGTACGGCATAATCTCCTTATGATGGACAGAGATTAGCGCTGAT
TCCAGTGGTGATTCTGAGGGGATTCATAATTTATGACGGGGGGAATAAAC
ACTCCCCATCATAAATTTTGAGCACCCCTTTGATCCGCTGCAGGGTTCGA
TGAAAATTATGTATCTgttatttttttggtaaaacttCATTCTTTGAAAT
GGACCAGGTTTTGTCGCGTCGCATAAAAGAAGTCACGGGTCCTATAAGTG
TTTGCTCTCtactaaatattttcaattattttttctcGTCATTCCCAGTC
CGGTCAATACACCAGCCTGATATATTTCCTGATGGGATTTTCAACATTCG
TCTCTGGTCAACTATCTTCATGTTTGAGAAGGCGAGGTGTTTCGGCAACA
GTTCTACGTAAAGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032975XLOC_032975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052067-exon-scaffold_21-1491911889:18015..18048TCONS_00052067-exon-scaffold_21-1491911889:18015..18048Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1510915933:18015..18048TCONS_00052067-exon-scaffold_21-1510915933:18015..18048Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1575043694:18015..18048TCONS_00052067-exon-scaffold_21-1575043694:18015..18048Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1491911889:18556..18643TCONS_00052067-exon-scaffold_21-1491911889:18556..18643Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1510915933:18556..18643TCONS_00052067-exon-scaffold_21-1510915933:18556..18643Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1575043694:18556..18643TCONS_00052067-exon-scaffold_21-1575043694:18556..18643Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1491911889:19523..19609TCONS_00052067-exon-scaffold_21-1491911889:19523..19609Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1510915933:19523..19609TCONS_00052067-exon-scaffold_21-1510915933:19523..19609Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1575043694:19523..19609TCONS_00052067-exon-scaffold_21-1575043694:19523..19609Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1491911889:20102..20235TCONS_00052067-exon-scaffold_21-1491911889:20102..20235Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1510915933:20102..20235TCONS_00052067-exon-scaffold_21-1510915933:20102..20235Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1575043694:20102..20235TCONS_00052067-exon-scaffold_21-1575043694:20102..20235Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1491911889:20682..20834TCONS_00052067-exon-scaffold_21-1491911889:20682..20834Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1510915933:20682..20834TCONS_00052067-exon-scaffold_21-1510915933:20682..20834Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1575043694:20682..20834TCONS_00052067-exon-scaffold_21-1575043694:20682..20834Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1491911889:21213..21331TCONS_00052067-exon-scaffold_21-1491911889:21213..21331Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1510915933:21213..21331TCONS_00052067-exon-scaffold_21-1510915933:21213..21331Clytia hemisphaericaexon
TCONS_00052067-exon-scaffold_21-1575043694:21213..21331TCONS_00052067-exon-scaffold_21-1575043694:21213..21331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:18015..21331 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.118881	0	0	0.193294	0.0276577	0.442427	0.204519	0.688195	0.0103502	0.499992	0.011555	0	0.411731	0.374839	0.344775	0	0	0	0.113984	0	0.631823	0	0.064545	0	0	0	0
Blast
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BLAST of TCONS_00052067 vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 4.856e-43
Identity = 76/193 (39.38%), Postives = 116/193 (60.10%), Query Frame = 2 
Query:    5 VLRLVEGLCEGCIYPAMYSIWSRWAPPMERAALVTIPHSGSYAGSVAGTLLAGYLCEVCGWSWVFYFFGILALIWVVVWQILASDSPEDDNHISNVERRMILESLESEHTSQKLSDDLPWFSIFTSLPFISIAVAHTCEGWAFGLIQTSFPKYLSEALNYRIFKSGQYTSLIYFLMGFSTFVSGQLSSCLRRR 583
            VLR +EGL EG  +PAM+++WS WAPP+ER+ L++I ++G+  G+V    L+G +C    W++VFYFFG + + W ++W  L SD+P+    IS+ E+  IL SL ++ +SQK    +PW  I  SLP  +I VAH    W F  + T  P Y+ E L + + ++G  +SL Y        +SGQ +  LR +
Sbjct:  166 VLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQK---SVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSGQAADNLRAK 355
The following BLAST results are available for this feature:
BLAST of TCONS_00052067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A54.856e-4339.38Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2[more]
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