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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052059 ID=TCONS_00052059|Name=TCONS_00052059|organism=Clytia hemisphaerica|type=transcript|length=1139bp
CGAATACGAAATGACGAAAAAACCCTGTGCAAATACACTCGATCACTGCG
ACTTGTTGCATTTACACAGAGTGGAAAAATGTTACacttgattataaaaa
aatgcacaGATCAAATTTTTAACCCGtggacaaaaattttctaaaaaggc
taaagaatcttctaaaccagacctgatcaatcgaacttgtcgaaccaatc
gaactaatcgaactccatcaaacgattaaagttcgattaaaaaaattagt
cgaacctaatcgaacactcacaatttttgaagcaatagcagttcgattag
ttcggtcagtaaaaagttcgattagttcgatgatattaaatcctcatata
ttccctcgcttgcaaaaactttgtcctggcacgcgattgccatttcgaca
gttcaCGGTCCGACAGTTCCCGGTcttaacagcttgacgtttattgtata
gtcatctggggtaattagTGTTAAAATAAAGGGGAAATACGGGACACCCC
TAAAAACCTTGTTATTATTATAAATTTGGATTCAGATTGAGAGGATTTTG
GAGATAGTCATTCTAGCTGCTAGAAAAATGTCTAGTCAGATTATTCTAAc
atatacttttgatgtttcaacaaaagtttCACATGTGACTATACAAATCA
ATTTTCGTAGTTTTAGAAAGAAGTTTTCAAGTGTCAGGAAGAGCTGCAAT
CACTTTGATTATATTTGACTGAATTCTGACATCAAGATACTATGGTTTGA
GATTATAATAGTCTCATTATCAAACAAGGCACCTTATCTCTAAAAAGTGT
GTCCCATATTTACCCCGTAGTCAAATCTTAATCTTGACAAACTTGTTTGA
AGGTGTTCTGAGGGccataaaaatttcaagtcaaccTGCAGGACAACACA
GAGCTGCACAGagtttgaatttgttgaaaTCTTGCCATGCTTGGTAAAGg
gtgatttaaaaaatattgcaaaaagtttttgacaaCAACATAATTTTCAA
GTCAACCTGCAGGACAACACAGAATTTGAATTTGTTGAAATCTCGCCATA
CTTGGTAAAgggtgattttgaaaaattgcaaaaggtTTATGACAAtatct
caaaatcaaaacacatCAATCCAGTCAAAAATCCACTAT Run BLAST on NCBI transcript from alignment at scaffold_209:46264..47402 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052059 ID=TCONS_00052059|Name=TCONS_00052059|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at scaffold_209:46264..47402 (Clytia hemisphaerica)
ATAGTGGATTTTTGACTGGATTGatgtgttttgattttgagataTTGTCA
TAAaccttttgcaatttttcaaaatcacccTTTACCAAGTATGGCGAGAT
TTCAACAAATTCAAATTCTGTGTTGTCCTGCAGGTTGACTTGAAAATTAT
GTTGttgtcaaaaactttttgcaatattttttaaatcaccCTTTACCAAG
CATGGCAAGAtttcaacaaattcaaactCTGTGCAGCTCTGTGTTGTCCT
GCAggttgacttgaaatttttatggCCCTCAGAACACCTTCAAACAAGTT
TGTCAAGATTAAGATTTGACTACGGGGTAAATATGGGACACACTTTTTAG
AGATAAGGTGCCTTGTTTGATAATGAGACTATTATAATCTCAAACCATAG
TATCTTGATGTCAGAATTCAGTCAAATATAATCAAAGTGATTGCAGCTCT
TCCTGACACTTGAAAACTTCTTTCTAAAACTACGAAAATTGATTTGTATA
GTCACATGTGaaacttttgttgaaacatcaaaagtatatgTTAGAATAAT
CTGACTAGACATTTTTCTAGCAGCTAGAATGACTATCTCCAAAATCCTCT
CAATCTGAATCCAAATTTATAATAATAACAAGGTTTTTAGGGGTGTCCCG
TATTTCCCCTTTATTTTAACActaattaccccagatgactatacaataaa
cgtcaagctgttaagACCGGGAACTGTCGGACCGtgaactgtcgaaatgg
caatcgcgtgccaggacaaagtttttgcaagcgagggaatatatgaggat
ttaatatcatcgaactaatcgaactttttactgaccgaactaatcgaact
gctattgcttcaaaaattgtgagtgttcgattaggttcgactaatttttt
taatcgaactttaatcgtttgatggagttcgattagttcgattggttcga
caagttcgattgatcaggtctggtttagaagattctttagcctttttaga
aaatttttgtccaCGGGTTAAAAATTTGATCtgtgcatttttttataatc
aagtGTAACATTTTTCCACTCTGTGTAAATGCAACAAGTCGCAGTGATCG
AGTGTATTTGCACAGGGTTTTTTCGTCATTTCGTATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052059-exon-scaffold_209-1491911889:46264..47402 | TCONS_00052059-exon-scaffold_209-1491911889:46264..47402 | Clytia hemisphaerica | exon |
| TCONS_00052059-exon-scaffold_209-1510915933:46264..47402 | TCONS_00052059-exon-scaffold_209-1510915933:46264..47402 | Clytia hemisphaerica | exon |
| TCONS_00052059-exon-scaffold_209-1575043694:46264..47402 | TCONS_00052059-exon-scaffold_209-1575043694:46264..47402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_209 | supercontig | scaffold_209:46264..47402 . |
Blast
The following BLAST results are available for this feature:
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