TCONS_00052057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052057
Unique NameTCONS_00052057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052057 ID=TCONS_00052057|Name=TCONS_00052057|organism=Clytia hemisphaerica|type=transcript|length=486bp
TTCATACAGGAGAATACTTATATTTGTAAAATGGAACGAGTCAACTCTCA
CGACGCAATAACATATGATCGTTTGAGAGAATACGTGGATCGTGTTAGAT
CAATGACAAGTGGATATATTACTACTACAAGACTGGATTTGTCAAGGATG
ATATGCAATAACTTGCTTCTGTCAATTTCAACATGGCCCCGTGAAATAAG
AGTACTATTCTTTAAACGTCCACTTGGTGTTGGAGACACTGCCAGATTAT
TCTGGTTCTTATTAGGAAATGGAGTGCCAGCAATGTTTGTTGCAAAGTGG
ATCATTTCGTCTCTGCATTGTGTCCGTGGACAGACATCACGTTTACTGAG
GACGGTTAATCAGTTACTGTATTTATACAACAACATAAATTTGCGGCAGC
ATGATTGGTATTACTATTCCCTTGAGGAAAATATACAATTGTATTTTGAC
GGCACACCTCGAGTACATGAAGAGCAAGATTAATTA
Run BLAST on NCBI

transcript from alignment at scaffold_209:123329..123976-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052057 ID=TCONS_00052057|Name=TCONS_00052057|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at scaffold_209:123329..123976- (Clytia hemisphaerica)
TTCATACAGGAGAATACTTATATTTGTAAAATGGAACGAGTCAACTCTCA
CGACGCAATAACATATGATCGTTTGAGAGAATACGTGGATCGTGTTAGAT
CAATGACAAGTGGATATATTACTACTACAAGACTGGATTTGTCAAGGATG
ATATGCAATAACTTGCTTCTGTCAATTTCAACATGGCCCCGTGAAATAAG
AGTACTATTCTTTAAACGTCCACTTGGTGTTGGAGACACTGCCAGATTAT
TCTGGTTCTTATTAGGTATGTCCAAATTGATTTCTTACGCAATAAATGTG
ACAATTAACTAACATGTTCTATGCCCTACACTATCTATTTTAGCAGTTAT
AATTCTATTATTCGGTACGTACCGATATTCCGATTTGTCCTATGTTGATT
TTAATTCTTTTTAAATATACATTTTAGGAAATGGAGTGCCAGCAATGTTT
GTTGCAAAGTGGATCATTTCGTCTCTGCATTGTGTCCGTGGACAGACATC
ACGTTTACTGAGGACGGTTAATCAGTTACTGTATTTATACAACAACATAA
ATTTGCGGCAGCATGATTGGTATTACTATTCCCTTGAGGAAAATATACAA
TTGTATTTTGACGGCACACCTCGAGTACATGAAGAGCAAGATTAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032966XLOC_032966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052057-exon-scaffold_209-1575043694:123712..123976TCONS_00052057-exon-scaffold_209-1575043694:123712..123976Clytia hemisphaericaexon
TCONS_00052057-exon-scaffold_209-1575043694:123329..123549TCONS_00052057-exon-scaffold_209-1575043694:123329..123549Clytia hemisphaericaexon
TCONS_00052057-exon-scaffold_209-1510915933:123712..123976TCONS_00052057-exon-scaffold_209-1510915933:123712..123976Clytia hemisphaericaexon
TCONS_00052057-exon-scaffold_209-1510915933:123329..123549TCONS_00052057-exon-scaffold_209-1510915933:123329..123549Clytia hemisphaericaexon
TCONS_00052057-exon-scaffold_209-1491911889:123712..123976TCONS_00052057-exon-scaffold_209-1491911889:123712..123976Clytia hemisphaericaexon
TCONS_00052057-exon-scaffold_209-1491911889:123329..123549TCONS_00052057-exon-scaffold_209-1491911889:123329..123549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_209supercontigscaffold_209:123329..123976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28078	1.99835	0.435051	0	1.89993	1.22838	0.164665	1.38742	0.755505	1.0695	0	0.511797	0.255543	0.0884613	0.50909	0.390237	0	0.0985486	0	0	0.371501	0.181205	0.734261	1.60212	0.137512	0	0.351242	0.374855	0.852943	0.869014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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